
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303707/COADREAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD-TP/2330187/1.GDAC_clinicalDataPicker.Finished/COADREAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=224, common to both=224
[1] "Reduce the number of clustering variables from 409 to 407."
[1] 407 224
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          160            64 
  APC MUTATED APC WILD-TYPE 
          160            64 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           85           139 
  TTN MUTATED TTN WILD-TYPE 
           85           139 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
[1] "CSMD1 MUTATION ANALYSIS"
[1] 3
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           33           191 
  DMD MUTATED DMD WILD-TYPE 
           33           191 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
[1] "SLITRK1 MUTATION ANALYSIS"
[1] 3
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
[1] "CCBP2 MUTATION ANALYSIS"
[1] 3
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
[1] "CDH2 MUTATION ANALYSIS"
[1] 3
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
[1] "OPCML MUTATION ANALYSIS"
[1] 3
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
[1] "NCAM2 MUTATION ANALYSIS"
[1] 3
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           32           192 
  FLG MUTATED FLG WILD-TYPE 
           32           192 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           25           199 
  ATM MUTATED ATM WILD-TYPE 
           25           199 
[1] "UBE2NL MUTATION ANALYSIS"
[1] 3
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
[1] "PTPRM MUTATION ANALYSIS"
[1] 3
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
[1] "IL1RAPL2 MUTATION ANALYSIS"
[1] 3
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
[1] "CHRDL1 MUTATION ANALYSIS"
[1] 3
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
[1] "ANK2 MUTATION ANALYSIS"
[1] 3
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
[1] "CASP14 MUTATION ANALYSIS"
[1] 3
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
[1] "NXF5 MUTATION ANALYSIS"
[1] 3
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
[1] "RIMS1 MUTATION ANALYSIS"
[1] 3
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
[1] "SPATA17 MUTATION ANALYSIS"
[1] 3
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
[1] "ATP10A MUTATION ANALYSIS"
[1] 3
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
[1] "UNC13C MUTATION ANALYSIS"
[1] 3
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
[1] "CNTN1 MUTATION ANALYSIS"
[1] 3
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
           10           214 
  C8B MUTATED C8B WILD-TYPE 
           10           214 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
[1] "GRIN2A MUTATION ANALYSIS"
[1] 3
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
[1] "POTEB MUTATION ANALYSIS"
[1] 3
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
[1] "RWDD2B MUTATION ANALYSIS"
[1] 3
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            5           219 
  B2M MUTATED B2M WILD-TYPE 
            5           219 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
[1] "GABRG1 MUTATION ANALYSIS"
[1] 3
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
[1] "CHST9 MUTATION ANALYSIS"
[1] 3
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
[1] "FAM135B MUTATION ANALYSIS"
[1] 3
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            6           218 
  GML MUTATED GML WILD-TYPE 
            6           218 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
[1] "JAKMIP2 MUTATION ANALYSIS"
[1] 3
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
[1] "GRIA4 MUTATION ANALYSIS"
[1] 3
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             12             212 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
             12             212 
[1] "SYT16 MUTATION ANALYSIS"
[1] 3
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
[1] "ZNF208 MUTATION ANALYSIS"
[1] 3
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
            20            204 
  DLC1 MUTATED DLC1 WILD-TYPE 
            20            204 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
[1] "PCDH17 MUTATION ANALYSIS"
[1] 3
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              16              208 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              16              208 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
[1] "LPHN3 MUTATION ANALYSIS"
[1] 3
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
[1] "ABCA12 MUTATION ANALYSIS"
[1] 3
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              22              202 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              22              202 
[1] "GPHN MUTATION ANALYSIS"
[1] 3
  GPHN MUTATED GPHN WILD-TYPE 
            12            212 
  GPHN MUTATED GPHN WILD-TYPE 
            12            212 
[1] "DSEL MUTATION ANALYSIS"
[1] 3
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
[1] "ATP7A MUTATION ANALYSIS"
[1] 3
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
[1] "ANGPTL5 MUTATION ANALYSIS"
[1] 3
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                8               216 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                8               216 
[1] "SH3GL3 MUTATION ANALYSIS"
[1] 3
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
[1] "EIF4A2 MUTATION ANALYSIS"
[1] 3
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             214 
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             214 
[1] "KCNH5 MUTATION ANALYSIS"
[1] 3
  KCNH5 MUTATED KCNH5 WILD-TYPE 
             13             211 
  KCNH5 MUTATED KCNH5 WILD-TYPE 
             13             211 
[1] "RNASE11 MUTATION ANALYSIS"
[1] 3
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            213 
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            213 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
[1] "CD1E MUTATION ANALYSIS"
[1] 3
  CD1E MUTATED CD1E WILD-TYPE 
             6            218 
  CD1E MUTATED CD1E WILD-TYPE 
             6            218 
[1] "CTSO MUTATION ANALYSIS"
[1] 3
  CTSO MUTATED CTSO WILD-TYPE 
             6            218 
  CTSO MUTATED CTSO WILD-TYPE 
             6            218 
[1] "ME1 MUTATION ANALYSIS"
[1] 3
  ME1 MUTATED ME1 WILD-TYPE 
            9           215 
  ME1 MUTATED ME1 WILD-TYPE 
            9           215 
[1] "ZNF593 MUTATION ANALYSIS"
[1] 3
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               4              220 
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               4              220 
[1] "LASS3 MUTATION ANALYSIS"
[1] 3
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
[1] "TRIM55 MUTATION ANALYSIS"
[1] 3
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               9              215 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               9              215 
[1] "POLI MUTATION ANALYSIS"
[1] 3
  POLI MUTATED POLI WILD-TYPE 
             8            216 
  POLI MUTATED POLI WILD-TYPE 
             8            216 
[1] "PCDHA13 MUTATION ANALYSIS"
[1] 3
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
               14               210 
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
               14               210 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              218 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              218 
[1] "NDUFAF4 MUTATION ANALYSIS"
[1] 3
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                5               219 
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                5               219 
[1] "SGCG MUTATION ANALYSIS"
[1] 3
  SGCG MUTATED SGCG WILD-TYPE 
             7            217 
  SGCG MUTATED SGCG WILD-TYPE 
             7            217 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                8               216 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                8               216 
[1] "ZNF568 MUTATION ANALYSIS"
[1] 3
  ZNF568 MUTATED ZNF568 WILD-TYPE 
               9              215 
  ZNF568 MUTATED ZNF568 WILD-TYPE 
               9              215 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
[1] "PRKD1 MUTATION ANALYSIS"
[1] 3
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             12             212 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
             12             212 
[1] "MACC1 MUTATION ANALYSIS"
[1] 3
  MACC1 MUTATED MACC1 WILD-TYPE 
             11             213 
  MACC1 MUTATED MACC1 WILD-TYPE 
             11             213 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              7             217 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              7             217 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
[1] "ARHGAP15 MUTATION ANALYSIS"
[1] 3
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 7                217 
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 7                217 
[1] "MDGA2 MUTATION ANALYSIS"
[1] 3
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               213 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               213 
[1] "ZNF429 MUTATION ANALYSIS"
[1] 3
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               9              215 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               9              215 
[1] "MAPK10 MUTATION ANALYSIS"
[1] 3
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               8              216 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               8              216 
[1] "SLC16A7 MUTATION ANALYSIS"
[1] 3
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
[1] "ADAMTS12 MUTATION ANALYSIS"
[1] 3
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                18                206 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                18                206 
[1] "FREM2 MUTATION ANALYSIS"
[1] 3
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
[1] "SGCZ MUTATION ANALYSIS"
[1] 3
  SGCZ MUTATED SGCZ WILD-TYPE 
             7            217 
  SGCZ MUTATED SGCZ WILD-TYPE 
             7            217 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              217 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              217 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               9              215 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               9              215 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
              5             219 
  REG1A MUTATED REG1A WILD-TYPE 
              5             219 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
[1] "KCNQ3 MUTATION ANALYSIS"
[1] 3
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
             13             211 
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
             13             211 
[1] "FNDC1 MUTATION ANALYSIS"
[1] 3
  FNDC1 MUTATED FNDC1 WILD-TYPE 
             16             208 
  FNDC1 MUTATED FNDC1 WILD-TYPE 
             16             208 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
[1] "PCDHB16 MUTATION ANALYSIS"
[1] 3
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
               10               214 
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
               10               214 
[1] "CHST4 MUTATION ANALYSIS"
[1] 3
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             217 
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             217 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
[1] "CYP11B1 MUTATION ANALYSIS"
[1] 3
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
                9               215 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
                9               215 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
[1] "AMY2A MUTATION ANALYSIS"
[1] 3
  AMY2A MUTATED AMY2A WILD-TYPE 
              5             219 
  AMY2A MUTATED AMY2A WILD-TYPE 
              5             219 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
[1] "ANO4 MUTATION ANALYSIS"
[1] 3
  ANO4 MUTATED ANO4 WILD-TYPE 
            11            213 
  ANO4 MUTATED ANO4 WILD-TYPE 
            11            213 
[1] "GALNT14 MUTATION ANALYSIS"
[1] 3
  GALNT14 MUTATED GALNT14 WILD-TYPE 
               10               214 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
               10               214 
[1] "HDAC9 MUTATION ANALYSIS"
[1] 3
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             11             213 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             11             213 
[1] "NMUR2 MUTATION ANALYSIS"
[1] 3
  NMUR2 MUTATED NMUR2 WILD-TYPE 
              9             215 
  NMUR2 MUTATED NMUR2 WILD-TYPE 
              9             215 
[1] "SCN9A MUTATION ANALYSIS"
[1] 3
  SCN9A MUTATED SCN9A WILD-TYPE 
             13             211 
  SCN9A MUTATED SCN9A WILD-TYPE 
             13             211 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              20              204 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              20              204 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
[1] "SLC9A9 MUTATION ANALYSIS"
[1] 3
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              12              212 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
              12              212 
[1] "TMBIM4 MUTATION ANALYSIS"
[1] 3
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
[1] "LILRB5 MUTATION ANALYSIS"
[1] 3
  LILRB5 MUTATED LILRB5 WILD-TYPE 
              10              214 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
              10              214 
[1] "CYTL1 MUTATION ANALYSIS"
[1] 3
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             220 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             220 
[1] "SPAG17 MUTATION ANALYSIS"
[1] 3
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              17              207 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              17              207 
[1] "HMCN1 MUTATION ANALYSIS"
[1] 3
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             30             194 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             30             194 
[1] "LEPREL1 MUTATION ANALYSIS"
[1] 3
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
               10               214 
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
               10               214 
[1] "SLC44A5 MUTATION ANALYSIS"
[1] 3
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                9               215 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                9               215 
[1] "DCHS2 MUTATION ANALYSIS"
[1] 3
  DCHS2 MUTATED DCHS2 WILD-TYPE 
             23             201 
  DCHS2 MUTATED DCHS2 WILD-TYPE 
             23             201 
[1] "ADCY2 MUTATION ANALYSIS"
[1] 3
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             14             210 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             14             210 
[1] "MAP2K3 MUTATION ANALYSIS"
[1] 3
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
               6              218 
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
               6              218 
[1] "TNR MUTATION ANALYSIS"
[1] 3
  TNR MUTATED TNR WILD-TYPE 
           17           207 
  TNR MUTATED TNR WILD-TYPE 
           17           207 
[1] "PXDNL MUTATION ANALYSIS"
[1] 3
  PXDNL MUTATED PXDNL WILD-TYPE 
             12             212 
  PXDNL MUTATED PXDNL WILD-TYPE 
             12             212 
[1] "ZMYM6 MUTATION ANALYSIS"
[1] 3
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
             10             214 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
             10             214 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
[1] "ATP6V0D2 MUTATION ANALYSIS"
[1] 3
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 8                216 
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 8                216 
[1] "STON1-GTF2A1L MUTATION ANALYSIS"
[1] 3
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                     12                     212 
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                     12                     212 
[1] "CACNG7 MUTATION ANALYSIS"
[1] 3
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
[1] "ZNF479 MUTATION ANALYSIS"
[1] 3
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               8              216 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               8              216 
[1] "ITK MUTATION ANALYSIS"
[1] 3
  ITK MUTATED ITK WILD-TYPE 
           10           214 
  ITK MUTATED ITK WILD-TYPE 
           10           214 
[1] "CLEC18C MUTATION ANALYSIS"
[1] 3
  CLEC18C MUTATED CLEC18C WILD-TYPE 
                5               219 
  CLEC18C MUTATED CLEC18C WILD-TYPE 
                5               219 
[1] "NRG1 MUTATION ANALYSIS"
[1] 3
  NRG1 MUTATED NRG1 WILD-TYPE 
            13            211 
  NRG1 MUTATED NRG1 WILD-TYPE 
            13            211 
[1] "TECTA MUTATION ANALYSIS"
[1] 3
  TECTA MUTATED TECTA WILD-TYPE 
             21             203 
  TECTA MUTATED TECTA WILD-TYPE 
             21             203 
[1] "ARL2BP MUTATION ANALYSIS"
[1] 3
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               5              219 
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               5              219 
[1] "DPYD MUTATION ANALYSIS"
[1] 3
  DPYD MUTATED DPYD WILD-TYPE 
            12            212 
  DPYD MUTATED DPYD WILD-TYPE 
            12            212 
[1] "GFRA1 MUTATION ANALYSIS"
[1] 3
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              8             216 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              8             216 
[1] "MYO1B MUTATION ANALYSIS"
[1] 3
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
[1] "RSPO2 MUTATION ANALYSIS"
[1] 3
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              6             218 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              6             218 
[1] "AURKC MUTATION ANALYSIS"
[1] 3
  AURKC MUTATED AURKC WILD-TYPE 
              7             217 
  AURKC MUTATED AURKC WILD-TYPE 
              7             217 
[1] "FIGN MUTATION ANALYSIS"
[1] 3
  FIGN MUTATED FIGN WILD-TYPE 
             9            215 
  FIGN MUTATED FIGN WILD-TYPE 
             9            215 
[1] "KCNH7 MUTATION ANALYSIS"
[1] 3
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             14             210 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             14             210 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
[1] "OR6B3 MUTATION ANALYSIS"
[1] 3
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              6             218 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              6             218 
[1] "TMPRSS11A MUTATION ANALYSIS"
[1] 3
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  7                 217 
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  7                 217 
[1] "OR13C9 MUTATION ANALYSIS"
[1] 3
  OR13C9 MUTATED OR13C9 WILD-TYPE 
               5              219 
  OR13C9 MUTATED OR13C9 WILD-TYPE 
               5              219 
[1] "SSX5 MUTATION ANALYSIS"
[1] 3
  SSX5 MUTATED SSX5 WILD-TYPE 
             6            218 
  SSX5 MUTATED SSX5 WILD-TYPE 
             6            218 
[1] "AGPAT4 MUTATION ANALYSIS"
[1] 3
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               7              217 
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               7              217 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
[1] "OR52H1 MUTATION ANALYSIS"
[1] 3
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               7              217 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               7              217 
[1] "C15ORF2 MUTATION ANALYSIS"
[1] 3
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
[1] "SCML4 MUTATION ANALYSIS"
[1] 3
  SCML4 MUTATED SCML4 WILD-TYPE 
              7             217 
  SCML4 MUTATED SCML4 WILD-TYPE 
              7             217 
[1] "SLC8A1 MUTATION ANALYSIS"
[1] 3
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              13              211 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              13              211 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            15            209 
  HRNR MUTATED HRNR WILD-TYPE 
            15            209 
[1] "UGGT2 MUTATION ANALYSIS"
[1] 3
  UGGT2 MUTATED UGGT2 WILD-TYPE 
             12             212 
  UGGT2 MUTATED UGGT2 WILD-TYPE 
             12             212 
[1] "MARCO MUTATION ANALYSIS"
[1] 3
  MARCO MUTATED MARCO WILD-TYPE 
             10             214 
  MARCO MUTATED MARCO WILD-TYPE 
             10             214 
[1] "IGFBP3 MUTATION ANALYSIS"
[1] 3
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               4              220 
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               4              220 
[1] "ZNF560 MUTATION ANALYSIS"
[1] 3
  ZNF560 MUTATED ZNF560 WILD-TYPE 
              10              214 
  ZNF560 MUTATED ZNF560 WILD-TYPE 
              10              214 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             11             213 
  RNF43 MUTATED RNF43 WILD-TYPE 
             11             213 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               5              219 
  FERD3L MUTATED FERD3L WILD-TYPE 
               5              219 
[1] "CACNG3 MUTATION ANALYSIS"
[1] 3
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
[1] "FGA MUTATION ANALYSIS"
[1] 3
  FGA MUTATED FGA WILD-TYPE 
           12           212 
  FGA MUTATED FGA WILD-TYPE 
           12           212 
[1] "COL22A1 MUTATION ANALYSIS"
[1] 3
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               16               208 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               16               208 
[1] "SLC6A15 MUTATION ANALYSIS"
[1] 3
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
               10               214 
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
               10               214 
[1] "PROKR1 MUTATION ANALYSIS"
[1] 3
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               9              215 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               9              215 
[1] "CADM1 MUTATION ANALYSIS"
[1] 3
  CADM1 MUTATED CADM1 WILD-TYPE 
              8             216 
  CADM1 MUTATED CADM1 WILD-TYPE 
              8             216 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              12              212 
  FAM47C MUTATED FAM47C WILD-TYPE 
              12              212 
[1] "PTPRT MUTATION ANALYSIS"
[1] 3
  PTPRT MUTATED PTPRT WILD-TYPE 
             14             210 
  PTPRT MUTATED PTPRT WILD-TYPE 
             14             210 
[1] "MYO16 MUTATION ANALYSIS"
[1] 3
  MYO16 MUTATED MYO16 WILD-TYPE 
             17             207 
  MYO16 MUTATED MYO16 WILD-TYPE 
             17             207 
[1] "RPS23 MUTATION ANALYSIS"
[1] 3
  RPS23 MUTATED RPS23 WILD-TYPE 
              4             220 
  RPS23 MUTATED RPS23 WILD-TYPE 
              4             220 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               18               206 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               18               206 
[1] "FSTL1 MUTATION ANALYSIS"
[1] 3
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              6             218 
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              6             218 
[1] "MRGPRX1 MUTATION ANALYSIS"
[1] 3
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                6               218 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                6               218 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             5            219 
  RHOA MUTATED RHOA WILD-TYPE 
             5            219 
[1] "RPE65 MUTATION ANALYSIS"
[1] 3
  RPE65 MUTATED RPE65 WILD-TYPE 
              8             216 
  RPE65 MUTATED RPE65 WILD-TYPE 
              8             216 
[1] "ZNF648 MUTATION ANALYSIS"
[1] 3
  ZNF648 MUTATED ZNF648 WILD-TYPE 
               9              215 
  ZNF648 MUTATED ZNF648 WILD-TYPE 
               9              215 
[1] "MUC16 MUTATION ANALYSIS"
[1] 3
  MUC16 MUTATED MUC16 WILD-TYPE 
             38             186 
  MUC16 MUTATED MUC16 WILD-TYPE 
             38             186 
[1] "P2RY14 MUTATION ANALYSIS"
[1] 3
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               6              218 
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               6              218 
[1] "KIAA2022 MUTATION ANALYSIS"
[1] 3
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                15                209 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                15                209 
[1] "NLGN4X MUTATION ANALYSIS"
[1] 3
  NLGN4X MUTATED NLGN4X WILD-TYPE 
              10              214 
  NLGN4X MUTATED NLGN4X WILD-TYPE 
              10              214 
[1] "OR52J3 MUTATION ANALYSIS"
[1] 3
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               5              219 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               5              219 
[1] "POU4F2 MUTATION ANALYSIS"
[1] 3
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               9              215 
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               9              215 
[1] "HSPA1L MUTATION ANALYSIS"
[1] 3
  HSPA1L MUTATED HSPA1L WILD-TYPE 
               9              215 
  HSPA1L MUTATED HSPA1L WILD-TYPE 
               9              215 
[1] "C4ORF37 MUTATION ANALYSIS"
[1] 3
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                8               216 
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                8               216 
[1] "F13A1 MUTATION ANALYSIS"
[1] 3
  F13A1 MUTATED F13A1 WILD-TYPE 
             10             214 
  F13A1 MUTATED F13A1 WILD-TYPE 
             10             214 
[1] "PTN MUTATION ANALYSIS"
[1] 3
  PTN MUTATED PTN WILD-TYPE 
            5           219 
  PTN MUTATED PTN WILD-TYPE 
            5           219 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               12               212 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               12               212 
[1] "C20ORF71 MUTATION ANALYSIS"
[1] 3
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 5                219 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 5                219 
[1] "KCNB2 MUTATION ANALYSIS"
[1] 3
  KCNB2 MUTATED KCNB2 WILD-TYPE 
             11             213 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
             11             213 
[1] "SCN11A MUTATION ANALYSIS"
[1] 3
  SCN11A MUTATED SCN11A WILD-TYPE 
              17              207 
  SCN11A MUTATED SCN11A WILD-TYPE 
              17              207 
[1] "SLCO6A1 MUTATION ANALYSIS"
[1] 3
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               10               214 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
               10               214 
[1] "ZNF470 MUTATION ANALYSIS"
[1] 3
  ZNF470 MUTATED ZNF470 WILD-TYPE 
               8              216 
  ZNF470 MUTATED ZNF470 WILD-TYPE 
               8              216 
[1] "C12ORF54 MUTATION ANALYSIS"
[1] 3
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 4                220 
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 4                220 
[1] "OR52A5 MUTATION ANALYSIS"
[1] 3
  OR52A5 MUTATED OR52A5 WILD-TYPE 
               7              217 
  OR52A5 MUTATED OR52A5 WILD-TYPE 
               7              217 
[1] "TRPC6 MUTATION ANALYSIS"
[1] 3
  TRPC6 MUTATED TRPC6 WILD-TYPE 
             11             213 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
             11             213 
[1] "NLRP4 MUTATION ANALYSIS"
[1] 3
  NLRP4 MUTATED NLRP4 WILD-TYPE 
             14             210 
  NLRP4 MUTATED NLRP4 WILD-TYPE 
             14             210 
[1] "GABRG2 MUTATION ANALYSIS"
[1] 3
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               8              216 
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               8              216 
[1] "OR6T1 MUTATION ANALYSIS"
[1] 3
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             218 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             218 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
             7            217 
  IDH2 MUTATED IDH2 WILD-TYPE 
             7            217 
[1] "OR8K1 MUTATION ANALYSIS"
[1] 3
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              6             218 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              6             218 
[1] "RXFP2 MUTATION ANALYSIS"
[1] 3
  RXFP2 MUTATED RXFP2 WILD-TYPE 
             10             214 
  RXFP2 MUTATED RXFP2 WILD-TYPE 
             10             214 
[1] "TMEFF1 MUTATION ANALYSIS"
[1] 3
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               7              217 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               7              217 
[1] "OR51I2 MUTATION ANALYSIS"
[1] 3
  OR51I2 MUTATED OR51I2 WILD-TYPE 
               6              218 
  OR51I2 MUTATED OR51I2 WILD-TYPE 
               6              218 
[1] "ZNF804B MUTATION ANALYSIS"
[1] 3
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               11               213 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
               11               213 
[1] "LRGUK MUTATION ANALYSIS"
[1] 3
  LRGUK MUTATED LRGUK WILD-TYPE 
             10             214 
  LRGUK MUTATED LRGUK WILD-TYPE 
             10             214 
[1] "CLECL1 MUTATION ANALYSIS"
[1] 3
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               4              220 
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               4              220 
[1] "DNAJC24 MUTATION ANALYSIS"
[1] 3
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                3               221 
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                3               221 
[1] "HCN1 MUTATION ANALYSIS"
[1] 3
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
[1] "SLCO4C1 MUTATION ANALYSIS"
[1] 3
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
               11               213 
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
               11               213 
[1] "ZEB1 MUTATION ANALYSIS"
[1] 3
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            11            213 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
            11            213 
[1] "LRTM1 MUTATION ANALYSIS"
[1] 3
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
[1] "OLFML1 MUTATION ANALYSIS"
[1] 3
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              217 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              217 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                8               216 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                8               216 
[1] "TAS2R10 MUTATION ANALYSIS"
[1] 3
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                6               218 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                6               218 
[1] "TM9SF1 MUTATION ANALYSIS"
[1] 3
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
               9              215 
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
               9              215 
[1] "BOC MUTATION ANALYSIS"
[1] 3
  BOC MUTATED BOC WILD-TYPE 
           14           210 
  BOC MUTATED BOC WILD-TYPE 
           14           210 
[1] "CFHR5 MUTATION ANALYSIS"
[1] 3
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              6             218 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              6             218 
[1] "PKHD1 MUTATION ANALYSIS"
[1] 3
  PKHD1 MUTATED PKHD1 WILD-TYPE 
             26             198 
  PKHD1 MUTATED PKHD1 WILD-TYPE 
             26             198 
[1] "DOK5 MUTATION ANALYSIS"
[1] 3
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
[1] "TMEM74 MUTATION ANALYSIS"
[1] 3
  TMEM74 MUTATED TMEM74 WILD-TYPE 
               6              218 
  TMEM74 MUTATED TMEM74 WILD-TYPE 
               6              218 
[1] "VCAM1 MUTATION ANALYSIS"
[1] 3
  VCAM1 MUTATED VCAM1 WILD-TYPE 
              8             216 
  VCAM1 MUTATED VCAM1 WILD-TYPE 
              8             216 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             212 
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             212 
[1] "GSK3B MUTATION ANALYSIS"
[1] 3
  GSK3B MUTATED GSK3B WILD-TYPE 
              7             217 
  GSK3B MUTATED GSK3B WILD-TYPE 
              7             217 
[1] "ZNF585A MUTATION ANALYSIS"
[1] 3
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
[1] "C22ORF23 MUTATION ANALYSIS"
[1] 3
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 6                218 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 6                218 
[1] "CYP19A1 MUTATION ANALYSIS"
[1] 3
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                8               216 
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                8               216 
[1] "STAG1 MUTATION ANALYSIS"
[1] 3
  STAG1 MUTATED STAG1 WILD-TYPE 
             12             212 
  STAG1 MUTATED STAG1 WILD-TYPE 
             12             212 
[1] "FAM47A MUTATION ANALYSIS"
[1] 3
  FAM47A MUTATED FAM47A WILD-TYPE 
               9              215 
  FAM47A MUTATED FAM47A WILD-TYPE 
               9              215 
[1] "RIMBP2 MUTATION ANALYSIS"
[1] 3
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
              16              208 
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
              16              208 
[1] "KCNA1 MUTATION ANALYSIS"
[1] 3
  KCNA1 MUTATED KCNA1 WILD-TYPE 
              8             216 
  KCNA1 MUTATED KCNA1 WILD-TYPE 
              8             216 
[1] "QRFPR MUTATION ANALYSIS"
[1] 3
  QRFPR MUTATED QRFPR WILD-TYPE 
              7             217 
  QRFPR MUTATED QRFPR WILD-TYPE 
              7             217 
[1] "CXORF59 MUTATION ANALYSIS"
[1] 3
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                6               218 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                6               218 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
[1] "FAT2 MUTATION ANALYSIS"
[1] 3
  FAT2 MUTATED FAT2 WILD-TYPE 
            29            195 
  FAT2 MUTATED FAT2 WILD-TYPE 
            29            195 
[1] "TAF1L MUTATION ANALYSIS"
[1] 3
  TAF1L MUTATED TAF1L WILD-TYPE 
             16             208 
  TAF1L MUTATED TAF1L WILD-TYPE 
             16             208 
[1] "ZNF474 MUTATION ANALYSIS"
[1] 3
  ZNF474 MUTATED ZNF474 WILD-TYPE 
               7              217 
  ZNF474 MUTATED ZNF474 WILD-TYPE 
               7              217 
[1] "CDON MUTATION ANALYSIS"
[1] 3
  CDON MUTATED CDON WILD-TYPE 
            14            210 
  CDON MUTATED CDON WILD-TYPE 
            14            210 
[1] "MSRB3 MUTATION ANALYSIS"
[1] 3
  MSRB3 MUTATED MSRB3 WILD-TYPE 
              4             220 
  MSRB3 MUTATED MSRB3 WILD-TYPE 
              4             220 
[1] "OR51G2 MUTATION ANALYSIS"
[1] 3
  OR51G2 MUTATED OR51G2 WILD-TYPE 
               6              218 
  OR51G2 MUTATED OR51G2 WILD-TYPE 
               6              218 
[1] "OR52B4 MUTATION ANALYSIS"
[1] 3
  OR52B4 MUTATED OR52B4 WILD-TYPE 
               5              219 
  OR52B4 MUTATED OR52B4 WILD-TYPE 
               5              219 
[1] "ZNF808 MUTATION ANALYSIS"
[1] 3
  ZNF808 MUTATED ZNF808 WILD-TYPE 
               8              216 
  ZNF808 MUTATED ZNF808 WILD-TYPE 
               8              216 
[1] "OSBPL6 MUTATION ANALYSIS"
[1] 3
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
              11              213 
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
              11              213 
[1] "DNMT1 MUTATION ANALYSIS"
[1] 3
  DNMT1 MUTATED DNMT1 WILD-TYPE 
             17             207 
  DNMT1 MUTATED DNMT1 WILD-TYPE 
             17             207 
[1] "ZNF583 MUTATION ANALYSIS"
[1] 3
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               7              217 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               7              217 
[1] "MAP2 MUTATION ANALYSIS"
[1] 3
  MAP2 MUTATED MAP2 WILD-TYPE 
            16            208 
  MAP2 MUTATED MAP2 WILD-TYPE 
            16            208 
[1] "OR13C3 MUTATION ANALYSIS"
[1] 3
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               5              219 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               5              219 
[1] "ST6GALNAC5 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   6                  218 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   6                  218 
[1] "FCRL5 MUTATION ANALYSIS"
[1] 3
  FCRL5 MUTATED FCRL5 WILD-TYPE 
             11             213 
  FCRL5 MUTATED FCRL5 WILD-TYPE 
             11             213 
[1] "ZNF677 MUTATION ANALYSIS"
[1] 3
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               9              215 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               9              215 
[1] "DNAH11 MUTATION ANALYSIS"
[1] 3
  DNAH11 MUTATED DNAH11 WILD-TYPE 
              18              206 
  DNAH11 MUTATED DNAH11 WILD-TYPE 
              18              206 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
[1] "PWP1 MUTATION ANALYSIS"
[1] 3
  PWP1 MUTATED PWP1 WILD-TYPE 
             8            216 
  PWP1 MUTATED PWP1 WILD-TYPE 
             8            216 
[1] "ARMC4 MUTATION ANALYSIS"
[1] 3
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             11             213 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             11             213 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               11               213 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               11               213 
[1] "OR4A5 MUTATION ANALYSIS"
[1] 3
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              5             219 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              5             219 
[1] "PSG7 MUTATION ANALYSIS"
[1] 3
  PSG7 MUTATED PSG7 WILD-TYPE 
             5            219 
  PSG7 MUTATED PSG7 WILD-TYPE 
             5            219 
[1] "ST8SIA3 MUTATION ANALYSIS"
[1] 3
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                6               218 
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                6               218 
[1] "UNC5C MUTATION ANALYSIS"
[1] 3
  UNC5C MUTATED UNC5C WILD-TYPE 
             11             213 
  UNC5C MUTATED UNC5C WILD-TYPE 
             11             213 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             11             213 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             11             213 
[1] "PCDHB7 MUTATION ANALYSIS"
[1] 3
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
              11              213 
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
              11              213 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                11                213 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                11                213 
[1] "GRM7 MUTATION ANALYSIS"
[1] 3
  GRM7 MUTATED GRM7 WILD-TYPE 
            11            213 
  GRM7 MUTATED GRM7 WILD-TYPE 
            11            213 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              6             218 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              6             218 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              16              208 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              16              208 
[1] "PEX3 MUTATION ANALYSIS"
[1] 3
  PEX3 MUTATED PEX3 WILD-TYPE 
             7            217 
  PEX3 MUTATED PEX3 WILD-TYPE 
             7            217 
[1] "CACNA1E MUTATION ANALYSIS"
[1] 3
  CACNA1E MUTATED CACNA1E WILD-TYPE 
               18               206 
  CACNA1E MUTATED CACNA1E WILD-TYPE 
               18               206 
[1] "ABCA13 MUTATION ANALYSIS"
[1] 3
  ABCA13 MUTATED ABCA13 WILD-TYPE 
              19              205 
  ABCA13 MUTATED ABCA13 WILD-TYPE 
              19              205 
[1] "NGB MUTATION ANALYSIS"
[1] 3
  NGB MUTATED NGB WILD-TYPE 
            3           221 
  NGB MUTATED NGB WILD-TYPE 
            3           221 
[1] "MAP3K4 MUTATION ANALYSIS"
[1] 3
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              17              207 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              17              207 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              13              211 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              13              211 
[1] "CTNNA2 MUTATION ANALYSIS"
[1] 3
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              11              213 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              11              213 
[1] "ZNF521 MUTATION ANALYSIS"
[1] 3
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              13              211 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
              13              211 
[1] "C20ORF160 MUTATION ANALYSIS"
[1] 3
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  6                 218 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  6                 218 
[1] "CHST10 MUTATION ANALYSIS"
[1] 3
  CHST10 MUTATED CHST10 WILD-TYPE 
               8              216 
  CHST10 MUTATED CHST10 WILD-TYPE 
               8              216 
[1] "CLEC4C MUTATION ANALYSIS"
[1] 3
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               5              219 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               5              219 
[1] "OR10S1 MUTATION ANALYSIS"
[1] 3
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               7              217 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               7              217 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              5             219 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              5             219 
[1] "TRPA1 MUTATION ANALYSIS"
[1] 3
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             11             213 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
             11             213 
[1] "OR4C11 MUTATION ANALYSIS"
[1] 3
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               4              220 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               4              220 
[1] "ASTN1 MUTATION ANALYSIS"
[1] 3
  ASTN1 MUTATED ASTN1 WILD-TYPE 
             15             209 
  ASTN1 MUTATED ASTN1 WILD-TYPE 
             15             209 
[1] "AMOTL1 MUTATION ANALYSIS"
[1] 3
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
              10              214 
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
              10              214 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
[1] "OR52N1 MUTATION ANALYSIS"
[1] 3
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              218 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              218 
[1] "ZNF536 MUTATION ANALYSIS"
[1] 3
  ZNF536 MUTATED ZNF536 WILD-TYPE 
              14              210 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
              14              210 
[1] "C6ORF97 MUTATION ANALYSIS"
[1] 3
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                9               215 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                9               215 
[1] "NBEA MUTATION ANALYSIS"
[1] 3
  NBEA MUTATED NBEA WILD-TYPE 
            14            210 
  NBEA MUTATED NBEA WILD-TYPE 
            14            210 
[1] "TRIM44 MUTATION ANALYSIS"
[1] 3
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               6              218 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               6              218 
[1] "ZNF667 MUTATION ANALYSIS"
[1] 3
  ZNF667 MUTATED ZNF667 WILD-TYPE 
               9              215 
  ZNF667 MUTATED ZNF667 WILD-TYPE 
               9              215 
[1] "HKR1 MUTATION ANALYSIS"
[1] 3
  HKR1 MUTATED HKR1 WILD-TYPE 
             8            216 
  HKR1 MUTATED HKR1 WILD-TYPE 
             8            216 
[1] "OLFM3 MUTATION ANALYSIS"
[1] 3
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              6             218 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              6             218 
[1] "HTR2C MUTATION ANALYSIS"
[1] 3
  HTR2C MUTATED HTR2C WILD-TYPE 
              7             217 
  HTR2C MUTATED HTR2C WILD-TYPE 
              7             217 
[1] "ZNF492 MUTATION ANALYSIS"
[1] 3
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               7              217 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               7              217 
[1] "IL2 MUTATION ANALYSIS"
[1] 3
  IL2 MUTATED IL2 WILD-TYPE 
            4           220 
  IL2 MUTATED IL2 WILD-TYPE 
            4           220 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             7            217 
  ASB5 MUTATED ASB5 WILD-TYPE 
             7            217 
[1] "C9ORF79 MUTATION ANALYSIS"
[1] 3
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
               13               211 
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
               13               211 
[1] "COL6A3 MUTATION ANALYSIS"
[1] 3
  COL6A3 MUTATED COL6A3 WILD-TYPE 
              27              197 
  COL6A3 MUTATED COL6A3 WILD-TYPE 
              27              197 
[1] "LUM MUTATION ANALYSIS"
[1] 3
  LUM MUTATED LUM WILD-TYPE 
            6           218 
  LUM MUTATED LUM WILD-TYPE 
            6           218 
[1] "SORCS3 MUTATION ANALYSIS"
[1] 3
  SORCS3 MUTATED SORCS3 WILD-TYPE 
              12              212 
  SORCS3 MUTATED SORCS3 WILD-TYPE 
              12              212 
[1] "ELAVL2 MUTATION ANALYSIS"
[1] 3
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               7              217 
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               7              217 
[1] "DAPK1 MUTATION ANALYSIS"
[1] 3
  DAPK1 MUTATED DAPK1 WILD-TYPE 
             15             209 
  DAPK1 MUTATED DAPK1 WILD-TYPE 
             15             209 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 224 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3514 TCGA-AA-3516 
         472          332          278          246           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3678 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 
          30           NA           NA           NA           30           NA 
TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3710 TCGA-AA-3715 
          NA           NA           NA           NA           31           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 
          NA           NA           31           31           28           NA 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 
          30           30           NA           NA           NA           31 
TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
          NA           30           31           30           30           31 
TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 
          30           NA           31           NA           NA           NA 
TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A 
          NA           30           NA           NA          424          548 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
         578          913         1035          548          548          517 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
          NA          822          822           30          517          456 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
         669          638          457           30          396          365 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
         365          396           NA           31         1065           31 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 
        1005         1065          791          638           NA         1188 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
        1580         1215           61          153           28         1246 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
        1215          548         1245          496           29          482 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3574 TCGA-AG-3575 
         323          412          387          316           NA           NA 
TCGA-AG-3578 TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 
          NA           NA           31           31           61           NA 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           31           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3881 
          NA           NA           31           29           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
         637          423          183          789          700          518 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
         484          396           31          365         2130         1946 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
         334         1519           59         1184         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 
        1156         2192 
Variable 1:'AGE':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                     "PRIMARY.SITE.OF.DISEASE"
[3] "GENDER"                  "HISTOLOGICAL.TYPE"      
[5] "PATHOLOGY.T"             "PATHOLOGY.N"            
[7] "PATHOLOGICSPREAD(M)"     "TUMOR.STAGE"            
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
48 82 60 29 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 224 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=49, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  9  47 150  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  47 150  17 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
134  44  46 
[1] "table(vv)"
vv
 N0  N1  N2 
134  44  46 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2 
134  44  46 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
134  44  46 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 48  82  60  29 
[1] "table(vv)"
vv
  I  II III  IV 
 48  82  60  29 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 48  82  60  29 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 48  82  60  29 

Clustering(1) Variable = FBXW7 MUTATION ANALYSIS
D1V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED   17  2
  FBXW7 WILD-TYPE 89 12
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             101 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2              12 
$`FBXW7 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 
       16.54        14.70        17.79        10.92         1.02         1.02 
TCGA-AA-3848 TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
        0.99         0.99        18.02        13.02         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A03F TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A011 
       20.98        39.06        18.02         1.02        20.94        17.03 
TCGA-AG-A02N 
       61.94 

$`FBXW7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 
       13.91        17.19        14.37        15.52         9.14         8.09 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 
        1.02         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       12.00        38.07         1.02        33.04        35.01        26.01 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.99            0.92 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          61.94           72.07 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          16.54            9.14 
[1] "1.0 - 61.9 (16.5)" "0.9 - 72.1 (9.1)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     29    9
  FBXW7 WILD-TYPE  125   59
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D1V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     21   17
  FBXW7 WILD-TYPE   86  100
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            21              86
  MALE              17             100
D1V5, multiclass
                                clus
vv                               FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D1V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            31             119
  T4             2              15
D1V7, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            23             111
  N1             6              38
  N2             9              37
D1V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             38             151
  M1              0              31
  M1A             0               1
D1V9, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  I               4              44
  II             19              63
  III            15              45
  IV              0              29

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   61  7
  TP53 WILD-TYPE 45  7
  TP53 MUTATED TP53 WILD-TYPE 
            68             52 
  TP53 MUTATED TP53 WILD-TYPE 
             7              7 
$`TP53 MUTATED`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        8.09         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         1.02        13.94        19.00        30.02        34.03 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        27.02        14.99        20.98         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A02F 
       12.00        13.02         1.02        33.04        20.98        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        40.96        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3587 
       15.85        10.62        12.72        10.39         1.02         1.02 
TCGA-AG-3726 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01L 
        6.02        23.01        17.03        15.91         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       70.03        63.98        10.98         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

$`TP53 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 
       16.54        17.79         9.14         1.02         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00A 
        0.99         0.99         1.02         1.02         0.99        18.02 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02         4.01        27.02         0.99        17.00 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       21.99        15.02        12.00        38.07         1.02        35.01 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02Y 
       35.01        26.01        39.06        51.95         0.92        39.95 
TCGA-AA-A03F TCGA-AF-2692 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3727 
       18.02        13.55         1.02         2.01         0.99         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A008 
        0.99         0.92         1.02         0.99        20.94        13.91 
TCGA-AG-A00H TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02G 
       25.94        13.02        49.94        38.93 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.92 
  TP53 MUTATED TP53 WILD-TYPE 
         72.07          51.95 
  TP53 MUTATED TP53 WILD-TYPE 
        11.490          6.575 
[1] "0.9 - 72.1 (11.5)" "0.9 - 52.0 (6.6)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     74   45
  TP53 WILD-TYPE   80   23
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  COLON            74             80
  RECTUM           45             23
D2V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     53   67
  TP53 WILD-TYPE   54   50
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           53             54
  MALE             67             50
D2V5, multiclass
                                clus
vv                               TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                     68             60
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                    41             16
  RECTAL MUCINOUS ADENOCARCINOMA            4              4
D2V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            4              5
  T2           25             22
  T3           82             68
  T4            8              9
D2V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           66             68
  N1           26             18
  N2           28             18
D2V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  M0            99             90
  M1            17             14
  M1A            1              0
D2V9, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             24             24
  II            38             44
  III           38             22
  IV            15             14

Clustering(3) Variable = APC MUTATION ANALYSIS
D3V1, survival
               sevent
clus2            0  1
  APC MUTATED   76 12
  APC WILD-TYPE 30  2
  APC MUTATED APC WILD-TYPE 
           88            32 
  APC MUTATED APC WILD-TYPE 
           12             2 
$`APC MUTATED`
TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 
       17.19        17.79        10.92         9.14         8.09         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99         1.02        18.02 
TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F 
       17.00        14.99        21.99        20.98        15.02        13.02 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2691 
        5.03         0.92        40.96        18.02         0.95        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01L 
       13.91         6.02        17.03        15.91        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

$`APC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-AA-3518 
       13.91        16.54        14.70        14.37        15.52         1.02 
TCGA-AA-3526 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3877 TCGA-AA-3949 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00Q 
        1.02         0.99        13.94        30.02        34.03        27.02 
TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01X TCGA-AA-A02Y 
        0.99         0.99        12.00        38.07        26.01        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AG-3582 TCGA-AG-4008 TCGA-AG-A00H 
       40.93        16.31        15.85         1.02         1.02        25.94 
TCGA-AG-A00Y TCGA-AG-A016 
       23.01         1.02 

  APC MUTATED APC WILD-TYPE 
         0.92          0.92 
  APC MUTATED APC WILD-TYPE 
        72.07         40.93 
  APC MUTATED APC WILD-TYPE 
       10.505        13.925 
[1] "0.9 - 72.1 (10.5)" "0.9 - 40.9 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
[1] "hr=" "2"  
D3V2, continuous
D3V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED    102   56
  APC WILD-TYPE   52   12
        clus
vv       APC MUTATED APC WILD-TYPE
  COLON          102            52
  RECTUM          56            12
D3V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     70   90
  APC WILD-TYPE   37   27
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          70            37
  MALE            90            27
D3V5, multiclass
                                clus
vv                               APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                    86            42
  COLON MUCINOUS ADENOCARCINOMA           15             9
  RECTAL ADENOCARCINOMA                   47            10
  RECTAL MUCINOUS ADENOCARCINOMA           6             2
D3V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           7             2
  T2          35            12
  T3         105            45
  T4          13             4
D3V7, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          97            37
  N1          31            13
  N2          32            14
D3V8, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  M0          132            57
  M1           24             7
  M1A           1             0
D3V9, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  I            37            11
  II           57            25
  III          39            21
  IV           23             6

Clustering(4) Variable = KRAS MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   55  3
  KRAS WILD-TYPE 51 11
  KRAS MUTATED KRAS WILD-TYPE 
            58             62 
  KRAS MUTATED KRAS WILD-TYPE 
             3             11 
$`KRAS MUTATED`
TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 
       15.52         9.14         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 
        1.02         0.92         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00K TCGA-AA-A00N 
        0.99         1.02         0.99        18.02        18.02         4.01 
TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       27.02        14.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01R TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02W 
       35.01        26.01        20.98        51.95         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       39.95        18.02        40.93        15.85        10.62        13.55 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.92         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01W TCGA-AG-A020 
       25.94        23.01        15.91        13.02        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94        61.94        40.96        38.01 

$`KRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-A004 TCGA-AA-A00D 
        0.99         0.99         1.02         1.02        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00R 
       30.02        34.03        18.02        17.00        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01P 
       17.00        21.99        20.98        15.02         0.99        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A02F 
        1.02         1.02        33.04        35.01        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-3400 TCGA-AF-3913 
        2.01         5.03        16.31         0.95        12.72        10.39 
TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A026 
       20.94        17.03         1.02        12.00        63.98         1.94 
TCGA-AG-A02G TCGA-AG-A036 
       38.93        72.07 

  KRAS MUTATED KRAS WILD-TYPE 
          0.92           0.95 
  KRAS MUTATED KRAS WILD-TYPE 
         70.03          72.07 
  KRAS MUTATED KRAS WILD-TYPE 
        11.490         10.655 
[1] "0.9 - 70.0 (11.5)" "0.9 - 72.1 (10.7)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
[1] "hr=" "4"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     58   37
  KRAS WILD-TYPE   96   31
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  COLON            58             96
  RECTUM           37             31
D4V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     44   52
  KRAS WILD-TYPE   63   65
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           44             63
  MALE             52             65
D4V5, multiclass
                                clus
vv                               KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                     46             82
  COLON MUCINOUS ADENOCARCINOMA            10             14
  RECTAL ADENOCARCINOMA                    29             28
  RECTAL MUCINOUS ADENOCARCINOMA            6              2
D4V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6              3
  T2           21             26
  T3           64             86
  T4            5             12
D4V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           63             71
  N1           16             28
  N2           17             29
D4V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  M0            83            106
  M1            10             21
  M1A            1              0
D4V9, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             23             25
  II            37             45
  III           23             37
  IV            10             19

Clustering(5) Variable = PIK3CA MUTATION ANALYSIS
D5V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   20  3
  PIK3CA WILD-TYPE 86 11
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              23               97 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               3               11 
$`PIK3CA MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3848 TCGA-AA-3877 
        9.14         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         0.99         1.02         4.01        20.98        12.00 
TCGA-AA-A01K TCGA-AA-A01V TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       13.02        35.01         0.92        39.95        18.02        40.93 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-A00H TCGA-AG-A020 TCGA-AG-A02N 
        0.99         0.92        25.94        10.98        61.94 

$`PIK3CA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3949 
        1.02         0.92         0.99         1.02         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01Q 
       15.02         0.99        13.02        12.00        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
       51.95        39.95         2.01         5.03        40.96        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.95         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y 
        1.02         1.02        20.94        13.91         6.02        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       63.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.92             0.92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           61.94            72.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
            4.01            12.00 
[1] "0.9 - 61.9 (4.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     26    7
  PIK3CA WILD-TYPE  128   61
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON              26              128
  RECTUM              7               61
D5V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     15   18
  PIK3CA WILD-TYPE   92   99
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             15               92
  MALE               18               99
D5V5, multiclass
                                clus
vv                               PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                       19              109
  COLON MUCINOUS ADENOCARCINOMA               7               17
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              3                5
D5V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                8
  T2              8               39
  T3             21              129
  T4              3               14
D5V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             27              107
  N1              3               41
  N2              3               43
D5V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              31              158
  M1               1               30
  M1A              0                1
D5V9, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                8               40
  II              18               64
  III              5               55
  IV               1               28

Clustering(6) Variable = FAM123B MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  FAM123B MUTATED    9  2
  FAM123B WILD-TYPE 97 12
  FAM123B MUTATED FAM123B WILD-TYPE 
               11               109 
  FAM123B MUTATED FAM123B WILD-TYPE 
                2                12 
$`FAM123B MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 
        9.14         1.02         0.99         1.02        18.02        20.98 
TCGA-AA-A01D TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A02N 
        0.99         1.02        20.94        38.93        61.94 

$`FAM123B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       63.98        10.98        49.94         1.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  FAM123B MUTATED FAM123B WILD-TYPE 
             0.99              0.92 
  FAM123B MUTATED FAM123B WILD-TYPE 
            61.94             72.07 
  FAM123B MUTATED FAM123B WILD-TYPE 
             9.14             10.98 
[1] "1.0 - 61.9 (9.1)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     19    6
  FAM123B WILD-TYPE  135   62
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  COLON               19               135
  RECTUM               6                62
D6V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     12   13
  FAM123B WILD-TYPE   95  104
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE              12                95
  MALE                13               104
D6V5, multiclass
                                clus
vv                               FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                        14               114
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D6V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              15               135
  T4               3                14
D6V7, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0              17               117
  N1               2                42
  N2               6                40
D6V8, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  M0               20               169
  M1                4                27
  M1A               0                 1
D6V9, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  I                 5                43
  II               11                71
  III               4                56
  IV                4                25

Clustering(7) Variable = NRAS MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  NRAS MUTATED    8  4
  NRAS WILD-TYPE 98 10
  NRAS MUTATED NRAS WILD-TYPE 
            12            108 
  NRAS MUTATED NRAS WILD-TYPE 
             4             10 
$`NRAS MUTATED`
TCGA-A6-2678 TCGA-AA-3666 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 
       14.37         1.02        34.03         4.01        35.01        39.06 
TCGA-AA-A02F TCGA-AF-2691 TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A01L 
       39.95        10.62        10.39         1.02         0.99        12.00 

$`NRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        20.98        51.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       15.85        13.55        12.72         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  NRAS MUTATED NRAS WILD-TYPE 
          0.99           0.92 
  NRAS MUTATED NRAS WILD-TYPE 
         39.95          72.07 
  NRAS MUTATED NRAS WILD-TYPE 
         11.31          10.95 
[1] "1.0 - 40.0 (11.3)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "2.8"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     15    5
  NRAS WILD-TYPE  139   63
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  COLON            15            139
  RECTUM            5             63
D7V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      5   15
  NRAS WILD-TYPE  102  102
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            5            102
  MALE             15            102
D7V5, multiclass
                                clus
vv                               NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                     13            115
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D7V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            2              7
  T2            5             42
  T3           11            139
  T4            2             15
D7V7, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0           11            123
  N1            8             36
  N2            1             45
D7V8, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  M0            15            174
  M1             4             27
  M1A            0              1
D7V9, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  I              5             43
  II             5             77
  III            5             55
  IV             3             26

Clustering(8) Variable = SMAD4 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED   13  1
  SMAD4 WILD-TYPE 93 13
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             14             106 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              13 
$`SMAD4 MUTATED`
TCGA-A6-2676 TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-A00K 
       14.70        14.37         0.99         1.02         0.99        18.02 
TCGA-AA-A01D TCGA-AA-A02O TCGA-AG-3887 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A016 
        0.99         0.92         0.92        13.91        17.03         1.02 
TCGA-AG-A020 TCGA-AG-A02X 
       10.98        40.96 

$`SMAD4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3679 
        9.14         8.09         1.02         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02        20.94         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 
       13.02        12.00        70.03        63.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        38.01        72.07 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.92            0.92 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          40.96           72.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           6.00           11.46 
[1] "0.9 - 41.0 (6.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.3"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     18    8
  SMAD4 WILD-TYPE  136   60
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON             18             136
  RECTUM             8              60
D8V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     13   13
  SMAD4 WILD-TYPE   94  104
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE            13              94
  MALE              13             104
D8V5, multiclass
                                clus
vv                               SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             4               4
D8V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            19             131
  T4             1              16
D8V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            16             118
  N1             5              39
  N2             5              41
D8V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             21             168
  M1              4              27
  M1A             0               1
D8V9, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               4              44
  II             11              71
  III             6              54
  IV              4              25

Clustering(9) Variable = TTN MUTATION ANALYSIS
D9V1, survival
               sevent
clus2            0  1
  TTN MUTATED   47  7
  TTN WILD-TYPE 59  7
  TTN MUTATED TTN WILD-TYPE 
           54            66 
  TTN MUTATED TTN WILD-TYPE 
            7             7 
$`TTN MUTATED`
TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3710 
       14.70        17.79         9.14         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3844 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         0.99         0.92         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O 
        0.99        30.02        18.02        18.02         4.01        27.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01P 
        0.99        20.98         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H 
       35.01         1.02        35.01        20.98        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 TCGA-AG-3887 
        5.03         0.92        40.96        39.95         0.95         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00Y 
        1.02         0.99         1.02         1.02        20.94        23.01 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       63.98        10.98        49.94         1.94        40.96        38.01 

$`TTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3952 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00Q 
       13.94        18.02        19.00        34.03        17.00        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01G TCGA-AA-A01K 
       17.00        14.99        21.99        15.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A03F 
        1.02        33.04        26.01        39.06        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 
        1.02         0.95         0.99         0.99         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A036 
        1.02        12.00        70.03        38.93        61.94        72.07 

  TTN MUTATED TTN WILD-TYPE 
         0.92          0.95 
  TTN MUTATED TTN WILD-TYPE 
        63.98         72.07 
  TTN MUTATED TTN WILD-TYPE 
        1.975        13.020 
[1] "0.9 - 64.0 (2.0)"  "0.9 - 72.1 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     68   16
  TTN WILD-TYPE   86   52
        clus
vv       TTN MUTATED TTN WILD-TYPE
  COLON           68            86
  RECTUM          16            52
D9V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     44   41
  TTN WILD-TYPE   63   76
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          44            63
  MALE            41            76
D9V5, multiclass
                                clus
vv                               TTN MUTATED TTN WILD-TYPE
  COLON ADENOCARCINOMA                    51            77
  COLON MUCINOUS ADENOCARCINOMA           16             8
  RECTAL ADENOCARCINOMA                   14            43
  RECTAL MUCINOUS ADENOCARCINOMA           2             6
D9V6, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  T1           4             5
  T2          21            26
  T3          49           101
  T4          10             7
D9V7, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  N0          58            76
  N1          16            28
  N2          11            35
D9V8, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  M0           74           115
  M1            7            24
  M1A           1             0
D9V9, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  I            23            25
  II           32            50
  III          20            40
  IV            8            21

Clustering(10) Variable = BRAF MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   11  1
  BRAF WILD-TYPE 95 13
  BRAF MUTATED BRAF WILD-TYPE 
            12            108 
  BRAF MUTATED BRAF WILD-TYPE 
             1             13 
$`BRAF MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
       16.54        14.70         0.99         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A01D TCGA-AA-A01P TCGA-AG-A002 
        1.02        19.00        18.02         0.99        38.07        20.94 

$`BRAF WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       13.94        18.02        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        20.98        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  BRAF MUTATED BRAF WILD-TYPE 
          0.99           0.92 
  BRAF MUTATED BRAF WILD-TYPE 
         38.07          72.07 
  BRAF MUTATED BRAF WILD-TYPE 
          7.86          10.95 
[1] "1.0 - 38.1 (7.9)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     20    2
  BRAF WILD-TYPE  134   66
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  COLON            20            134
  RECTUM            2             66
D10V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     15    7
  BRAF WILD-TYPE   92  110
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           15             92
  MALE              7            110
D10V5, multiclass
                                clus
vv                               BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA            11             13
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D10V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            1              8
  T2            4             43
  T3           12            138
  T4            4             13
D10V7, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0           13            121
  N1            5             39
  N2            4             42
D10V8, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  M0            21            168
  M1             1             30
  M1A            0              1
D10V9, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              5             43
  II             8             74
  III            8             52
  IV             1             28

Clustering(11) Variable = SMAD2 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  SMAD2 MUTATED    7  2
  SMAD2 WILD-TYPE 99 12
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             111 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              2              12 
$`SMAD2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02         4.01        35.01        39.06        51.95 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A01W 
       20.94        17.03        70.03 

$`SMAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       33.04        26.01        20.98        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SMAD2 MUTATED SMAD2 WILD-TYPE 
           1.02            0.92 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          70.03           72.07 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          20.94           10.62 
[1] "1.0 - 70.0 (20.9)" "0.9 - 72.1 (10.6)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     10    5
  SMAD2 WILD-TYPE  144   63
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON             10             144
  RECTUM             5              63
D11V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      5   10
  SMAD2 WILD-TYPE  102  107
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             5             102
  MALE              10             107
D11V5, multiclass
                                clus
vv                               SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D11V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               9
  T2             5              42
  T3             8             142
  T4             2              15
D11V7, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0            12             122
  N1             2              42
  N2             1              45
D11V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D11V9, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  I               3              45
  II              8              74
  III             1              59
  IV              2              27

Clustering(12) Variable = TCF7L2 MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  TCF7L2 MUTATED   10  0
  TCF7L2 WILD-TYPE 96 14
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              10              110 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               0               14 
$`TCF7L2 MUTATED`
TCGA-AA-3977 TCGA-AA-A00K TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01T TCGA-AF-2692 
        1.02        18.02        20.98        12.00        33.04        13.55 
TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-4007 TCGA-AG-A032 
        1.02         1.02         1.02        38.01 

$`TCF7L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3913 
       16.31         0.95        15.85        10.62        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         0.99         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
            1.02             0.92 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           38.01            72.07 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
          12.775           10.770 
[1] "1.0 - 38.0 (12.8)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     11    6
  TCF7L2 WILD-TYPE  143   62
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON              11              143
  RECTUM              6               62
D12V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     10    8
  TCF7L2 WILD-TYPE   97  109
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE             10               97
  MALE                8              109
D12V5, multiclass
                                clus
vv                               TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       6               51
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D12V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                9
  T2              5               42
  T3             10              140
  T4              3               14
D12V7, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0             11              123
  N1              4               40
  N2              3               43
D12V8, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0              14              175
  M1               3               28
  M1A              0                1
D12V9, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  I                3               45
  II               7               75
  III              4               56
  IV               3               26

Clustering(13) Variable = PCDH9 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  PCDH9 MUTATED   13  3
  PCDH9 WILD-TYPE 93 11
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             104 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
              3              11 
$`PCDH9 MUTATED`
TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3939 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01K 
        1.02         1.02         4.01        17.00        20.98        13.02 
TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A026 TCGA-AG-A02N 
        0.99        20.94         1.94        61.94 

$`PCDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 
        1.02         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 
        0.95         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98        49.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCDH9 MUTATED PCDH9 WILD-TYPE 
           0.99            0.92 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
          61.94           72.07 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "2.6"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     16    6
  PCDH9 WILD-TYPE  138   62
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON             16             138
  RECTUM             6              62
D13V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      7   15
  PCDH9 WILD-TYPE  100  102
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             7             100
  MALE              15             102
D13V5, multiclass
                                clus
vv                               PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D13V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               9
  T2             3              44
  T3            16             134
  T4             3              14
D13V7, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0            15             119
  N1             3              41
  N2             4              42
D13V8, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
D13V9, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  I               1              47
  II             13              69
  III             6              54
  IV              1              28

Clustering(14) Variable = LRP1B MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   18  3
  LRP1B WILD-TYPE 88 11
  LRP1B MUTATED LRP1B WILD-TYPE 
             21              99 
  LRP1B MUTATED LRP1B WILD-TYPE 
              3              11 
$`LRP1B MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3939 
       16.54         8.09         1.02         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02        18.02        18.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        1.02        35.01         2.01        40.96        39.95         0.95 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A036 
        1.02        20.94        72.07 

$`LRP1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         9.14         0.99         1.02         1.02         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A03F TCGA-AA-A03J 
       51.95        39.95         5.03         0.92        18.02        40.93 
TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
       16.31        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       61.94        40.96        38.01 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.95            0.92 
  LRP1B MUTATED LRP1B WILD-TYPE 
          72.07           70.03 
  LRP1B MUTATED LRP1B WILD-TYPE 
           4.01           12.00 
[1] "0.9 - 72.1 (4.0)"  "0.9 - 70.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     29    9
  LRP1B WILD-TYPE  125   59
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D14V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     22   17
  LRP1B WILD-TYPE   85  100
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            22              85
  MALE              17             100
D14V5, multiclass
                                clus
vv                               LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D14V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             2               7
  T2             7              40
  T3            25             125
  T4             5              12
D14V7, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            25             109
  N1             6              38
  N2             8              38
D14V8, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  M0             33             156
  M1              4              27
  M1A             0               1
D14V9, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  I               8              40
  II             16              66
  III            10              50
  IV              4              25

Clustering(15) Variable = WBSCR17 MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    9  0
  WBSCR17 WILD-TYPE 97 14
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                9               111 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                0                14 
$`WBSCR17 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 
        1.02         1.02         0.99         1.02         1.02        20.98 
TCGA-AA-A01X TCGA-AG-3894 TCGA-AG-A002 
       26.01         0.99        20.94 

$`WBSCR17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.99              0.92 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            26.01             72.07 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 26.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     17    2
  WBSCR17 WILD-TYPE  137   66
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON               17               137
  RECTUM               2                66
D15V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      9   10
  WBSCR17 WILD-TYPE   98  107
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               9                98
  MALE                10               107
D15V5, multiclass
                                clus
vv                               WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                        15               113
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D15V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3              14               136
  T4               2                15
D15V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0              13               121
  N1               3                41
  N2               3                43
D15V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               17               172
  M1                1                30
  M1A               0                 1
D15V9, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 1                47
  II               11                71
  III               5                55
  IV                1                28

Clustering(16) Variable = FAT4 MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  FAT4 MUTATED   21  1
  FAT4 WILD-TYPE 85 13
  FAT4 MUTATED FAT4 WILD-TYPE 
            22             98 
  FAT4 MUTATED FAT4 WILD-TYPE 
             1             13 
$`FAT4 MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
       14.70         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01D 
        1.02        30.02         4.01        27.02        20.98         0.99 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A02O TCGA-AG-3878 TCGA-AG-3887 
       35.01        35.01        26.01         0.92         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-A002 
        1.02         0.99         1.02        20.94 

$`FAT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02        33.04        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 
        0.99         1.02         0.95         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAT4 MUTATED FAT4 WILD-TYPE 
          0.92           0.92 
  FAT4 MUTATED FAT4 WILD-TYPE 
         35.01          72.07 
  FAT4 MUTATED FAT4 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr=" "1.8"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     29   10
  FAT4 WILD-TYPE  125   58
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  COLON            29            125
  RECTUM           10             58
D16V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     20   19
  FAT4 WILD-TYPE   87   98
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE           20             87
  MALE             19             98
D16V5, multiclass
                                clus
vv                               FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                     21            107
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     9             48
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D16V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            2              7
  T2           10             37
  T3           22            128
  T4            4             13
D16V7, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           27            107
  N1            6             38
  N2            6             40
D16V8, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  M0            37            152
  M1             1             30
  M1A            0              1
D16V9, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  I              9             39
  II            17             65
  III           11             49
  IV             1             28

Clustering(17) Variable = KLHL4 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    9  3
  KLHL4 WILD-TYPE 97 11
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             108 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              3              11 
$`KLHL4 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99        30.02        18.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01P TCGA-AA-A01R TCGA-AY-4070 TCGA-AF-2691 TCGA-AG-3892 
        0.99        38.07        35.01        16.31        10.62         1.02 

$`KLHL4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S 
       13.02        12.00        12.00        13.02         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 
       18.02        40.93         0.95        15.85        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.99            0.92 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          38.07           72.07 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
         13.465          10.950 
[1] "1.0 - 38.1 (13.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.7"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     12    4
  KLHL4 WILD-TYPE  142   64
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON             12             142
  RECTUM             4              64
D17V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     11    5
  KLHL4 WILD-TYPE   96  112
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE            11              96
  MALE               5             112
D17V5, multiclass
                                clus
vv                               KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D17V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             2               7
  T2             0              47
  T3            11             139
  T4             3              14
D17V7, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             4              42
D17V8, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D17V9, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               2              46
  II              8              74
  III             6              54
  IV              0              29

Clustering(18) Variable = PRDM9 MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  PRDM9 MUTATED   10  0
  PRDM9 WILD-TYPE 96 14
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             10             110 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              0              14 
$`PRDM9 MUTATED`
TCGA-A6-3810 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3727 
        8.09         1.02         0.99        20.98        35.01         0.95 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01L TCGA-AG-A02N 
        1.02        20.94        12.00        61.94 

$`PRDM9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W 
       23.01        17.03        15.91        13.02         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PRDM9 MUTATED PRDM9 WILD-TYPE 
           0.95            0.92 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
          61.94           72.07 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
         10.045          10.950 
[1] "0.9 - 61.9 (10.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     11    5
  PRDM9 WILD-TYPE  143   63
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON             11             143
  RECTUM             5              63
D18V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      9    7
  PRDM9 WILD-TYPE   98  110
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  FEMALE             9              98
  MALE               7             110
D18V5, multiclass
                                clus
vv                               PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D18V6, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            10             140
  T4             3              14
D18V7, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  N0            11             123
  N1             4              40
  N2             1              45
D18V8, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  M0             15             174
  M1              0              31
  M1A             1               0
D18V9, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  I               3              45
  II              8              74
  III             4              56
  IV              1              28

Clustering(19) Variable = ACVR1B MUTATION ANALYSIS
D19V1, survival
                  sevent
clus2               0  1
  ACVR1B MUTATED    8  2
  ACVR1B WILD-TYPE 98 12
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              10              110 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               2               12 
$`ACVR1B MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A01R 
       10.92         0.99         0.99        18.02        20.98        35.01 
TCGA-AA-A029 TCGA-AA-A02J TCGA-AA-A03F TCGA-AG-A01L 
       51.95         5.03        18.02        12.00 

$`ACVR1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       20.98        39.06        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        15.91        13.02         1.02        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ACVR1B MUTATED ACVR1B WILD-TYPE 
            0.99             0.92 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           51.95            72.07 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
          15.010           10.505 
[1] "1.0 - 52.0 (15.0)" "0.9 - 72.1 (10.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
[1] "hr=" "1.5"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    1
  ACVR1B WILD-TYPE  141   67
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D19V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      7    7
  ACVR1B WILD-TYPE  100  110
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  FEMALE              7              100
  MALE                7              110
D19V5, multiclass
                                clus
vv                               ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D19V6, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  T1              1                8
  T2              0               47
  T3             10              140
  T4              3               14
D19V7, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  N0              8              126
  N1              3               41
  N2              3               43
D19V8, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  M0              13              176
  M1               1               30
  M1A              0                1
D19V9, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  I                1               47
  II               6               76
  III              6               54
  IV               1               28

Clustering(20) Variable = CSMD1 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  CSMD1 MUTATED   13  5
  CSMD1 WILD-TYPE 93  9
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             18             102 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
              5               9 
$`CSMD1 MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3892 
        4.01        20.98        38.07         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A026 
        1.02        20.94        12.00        70.03        10.98         1.94 

$`CSMD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.95         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01Y 
       23.01        17.03        15.91        13.02         1.02        63.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  CSMD1 MUTATED CSMD1 WILD-TYPE 
           0.99            0.92 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
          70.03           72.07 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
           1.48           12.87 
[1] "1.0 - 70.0 (1.5)"  "0.9 - 72.1 (12.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
[1] "hr=" "4.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     17    9
  CSMD1 WILD-TYPE  137   59
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON             17             137
  RECTUM             9              59
D20V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     11   15
  CSMD1 WILD-TYPE   96  102
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  FEMALE            11              96
  MALE              15             102
D20V5, multiclass
                                clus
vv                               CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      8              49
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D20V6, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            17             133
  T4             4              13
D20V7, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  N0            19             115
  N1             4              40
  N2             3              43
D20V8, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  M0             22             167
  M1              3              28
  M1A             0               1
D20V9, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  I               4              44
  II             14              68
  III             4              56
  IV              3              26

Clustering(21) Variable = LIFR MUTATION ANALYSIS
D21V1, survival
                sevent
clus2             0  1
  LIFR MUTATED    7  3
  LIFR WILD-TYPE 99 11
  LIFR MUTATED LIFR WILD-TYPE 
            10            110 
  LIFR MUTATED LIFR WILD-TYPE 
             3             11 
$`LIFR MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
        1.02         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A010 TCGA-AF-3913 TCGA-AG-A002 TCGA-AG-A011 
       20.98        10.39        20.94        17.03 

$`LIFR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 
       15.85        10.62        13.55        12.72         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  LIFR MUTATED LIFR WILD-TYPE 
          0.99           0.92 
  LIFR MUTATED LIFR WILD-TYPE 
         20.98          72.07 
  LIFR MUTATED LIFR WILD-TYPE 
          7.20          11.49 
[1] "1.0 - 21.0 (7.2)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "3.9"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     13    5
  LIFR WILD-TYPE  141   63
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  COLON            13            141
  RECTUM            5             63
D21V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      6   12
  LIFR WILD-TYPE  101  105
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            6            101
  MALE             12            105
D21V5, multiclass
                                clus
vv                               LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D21V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            1              8
  T2            4             43
  T3           10            140
  T4            3             14
D21V7, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0           11            123
  N1            4             40
  N2            3             43
D21V8, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  M0            14            175
  M1             2             29
  M1A            0              1
D21V9, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  I              3             45
  II             6             76
  III            5             55
  IV             1             28

Clustering(22) Variable = MAP2K4 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2                0   1
  MAP2K4 MUTATED     5   2
  MAP2K4 WILD-TYPE 101  12
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               7              113 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               2               12 
$`MAP2K4 MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3727 
        1.02         1.02         0.99         4.01        20.98         0.95 
TCGA-AG-A00Y 
       23.01 

$`MAP2K4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            0.95             0.92 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
           23.01            72.07 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            1.02            12.00 
[1] "0.9 - 23.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
[1] "hr=" "4.6"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      9    2
  MAP2K4 WILD-TYPE  145   66
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D22V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      6    5
  MAP2K4 WILD-TYPE  101  112
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
D22V5, multiclass
                                clus
vv                               MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D22V6, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              8              142
  T4              2               15
D22V7, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0              8              126
  N1              2               42
  N2              1               45
D22V8, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D22V9, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  I                1               47
  II               7               75
  III              3               57
  IV               0               29

Clustering(23) Variable = CCDC160 MUTATION ANALYSIS
D23V1, survival
                   sevent
clus2                 0   1
  CCDC160 MUTATED     3   0
  CCDC160 WILD-TYPE 103  14
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                3               117 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                0                14 
$`CCDC160 MUTATED`
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       20.98         1.02        20.94 

$`CCDC160 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CCDC160 MUTATED CCDC160 WILD-TYPE 
             1.02              0.92 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             72.07 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.94             10.92 
[1] "1.0 - 21.0 (20.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    2
  CCDC160 WILD-TYPE  149   66
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D23V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    2
  CCDC160 WILD-TYPE  102  115
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  FEMALE               5               102
  MALE                 2               115
D23V5, multiclass
                                clus
vv                               CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D23V6, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               3               147
  T4               2                15
D23V7, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               0                46
D23V8, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  M0                6               183
  M1                1                30
  M1A               0                 1
D23V9, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  I                 2                46
  II                3                79
  III               1                59
  IV                1                28

Clustering(24) Variable = CNTN6 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  CNTN6 MUTATED   10  2
  CNTN6 WILD-TYPE 96 12
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             12             108 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
              2              12 
$`CNTN6 MUTATED`
TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 
        0.99         0.99         0.99         4.01         0.99        20.98 
TCGA-AA-A017 TCGA-AA-A01S TCGA-AA-A03J TCGA-AY-4070 TCGA-AG-3581 TCGA-AG-A002 
       15.02         1.02        40.93        16.31         1.02        20.94 

$`CNTN6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D 
       27.02        27.02        17.00        14.99        21.99         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       39.95        18.02         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CNTN6 MUTATED CNTN6 WILD-TYPE 
           0.99            0.92 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          40.93           72.07 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 40.9 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
[1] "hr=" "1.8"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     15    2
  CNTN6 WILD-TYPE  139   66
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D24V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     11    6
  CNTN6 WILD-TYPE   96  111
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  FEMALE            11              96
  MALE               6             111
D24V5, multiclass
                                clus
vv                               CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D24V6, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             8             142
  T4             3              14
D24V7, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
D24V8, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
D24V9, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  I               6              42
  II              8              74
  III             3              57
  IV              0              29

Clustering(25) Variable = NRXN1 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED    9  1
  NRXN1 WILD-TYPE 97 13
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             10             110 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              1              13 
$`NRXN1 MUTATED`
TCGA-AA-3526 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A02F TCGA-AG-A02N 
       35.01        20.98        39.95        61.94 

$`NRXN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 
        1.02        35.01         1.02        33.04        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           0.99            0.92 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          61.94           72.07 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
         12.495          10.950 
[1] "1.0 - 61.9 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
[1] "hr=" "1.5"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     17    3
  NRXN1 WILD-TYPE  137   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON             17             137
  RECTUM             3              65
D25V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      9   11
  NRXN1 WILD-TYPE   98  106
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE             9              98
  MALE              11             106
D25V5, multiclass
                                clus
vv                               NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D25V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             1               8
  T2             6              41
  T3            10             140
  T4             3              14
D25V7, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  N0            17             117
  N1             2              42
  N2             1              45
D25V8, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
D25V9, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I               5              43
  II             11              71
  III             2              58
  IV              1              28

Clustering(26) Variable = CPXCR1 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    9  0
  CPXCR1 WILD-TYPE 97 14
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              111 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               14 
$`CPXCR1 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-A010 TCGA-AA-A01T TCGA-AA-A01X 
       16.54         0.99         1.02        20.98        33.04        26.01 
TCGA-AG-3892 TCGA-AG-A008 TCGA-AG-A02N 
        1.02        13.91        61.94 

$`CPXCR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        20.94         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            0.99             0.92 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           61.94            72.07 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           16.54            10.62 
[1] "1.0 - 61.9 (16.5)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      6    3
  CPXCR1 WILD-TYPE  148   65
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D26V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      7    2
  CPXCR1 WILD-TYPE  100  115
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D26V5, multiclass
                                clus
vv                               CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D26V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              1               16
D26V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              5              129
  N1              4               40
  N2              0               46
D26V8, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D26V9, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                2               46
  II               3               79
  III              4               56
  IV               0               29

Clustering(27) Variable = DMD MUTATION ANALYSIS
D27V1, survival
               sevent
clus2            0  1
  DMD MUTATED   18  4
  DMD WILD-TYPE 88 10
  DMD MUTATED DMD WILD-TYPE 
           22            98 
  DMD MUTATED DMD WILD-TYPE 
            4            10 
$`DMD MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 TCGA-AA-3846 
       16.54        14.70        10.92         1.02         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A024 
        4.01        20.98        38.07         1.02        33.04        39.06 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A032 
        1.02        20.94        38.93        38.01 

$`DMD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       13.91        17.19        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        12.00        13.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       70.03        63.98        10.98        49.94         1.94        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  DMD MUTATED DMD WILD-TYPE 
         0.99          0.92 
  DMD MUTATED DMD WILD-TYPE 
        39.06         72.07 
  DMD MUTATED DMD WILD-TYPE 
        12.81         10.80 
[1] "1.0 - 39.1 (12.8)" "0.9 - 72.1 (10.8)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
[1] "hr=" "1.7"
D27V2, continuous
D27V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     27    6
  DMD WILD-TYPE  127   62
        clus
vv       DMD MUTATED DMD WILD-TYPE
  COLON           27           127
  RECTUM           6            62
D27V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     20   13
  DMD WILD-TYPE   87  104
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE          20            87
  MALE            13           104
D27V5, multiclass
                                clus
vv                               DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                    18           110
  COLON MUCINOUS ADENOCARCINOMA            9            15
  RECTAL ADENOCARCINOMA                    6            51
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D27V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           1             8
  T2           4            43
  T3          23           127
  T4           4            13
D27V7, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0          17           117
  N1          11            33
  N2           5            41
D27V8, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  M0           30           159
  M1            2            29
  M1A           0             1
D27V9, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  I             2            46
  II           14            68
  III          14            46
  IV            2            27

Clustering(28) Variable = SOX9 MUTATION ANALYSIS
D28V1, survival
                sevent
clus2              0   1
  SOX9 MUTATED     2   1
  SOX9 WILD-TYPE 104  13
  SOX9 MUTATED SOX9 WILD-TYPE 
             3            117 
  SOX9 MUTATED SOX9 WILD-TYPE 
             1             13 
$`SOX9 MUTATED`
TCGA-AA-3939 TCGA-AA-A03F TCGA-AG-A025 
        0.99        18.02        49.94 

$`SOX9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SOX9 MUTATED SOX9 WILD-TYPE 
          0.99           0.92 
  SOX9 MUTATED SOX9 WILD-TYPE 
         49.94          72.07 
  SOX9 MUTATED SOX9 WILD-TYPE 
         18.02          10.92 
[1] "1.0 - 49.9 (18.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
[1] "hr=" "1.8"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      9    1
  SOX9 WILD-TYPE  145   67
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  COLON             9            145
  RECTUM            1             67
D28V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      6    4
  SOX9 WILD-TYPE  101  113
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  FEMALE            6            101
  MALE              4            113
D28V5, multiclass
                                clus
vv                               SOX9 MUTATED SOX9 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D28V6, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  T1            1              8
  T2            0             47
  T3            9            141
  T4            0             17
D28V7, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  N0            7            127
  N1            1             43
  N2            2             44
D28V8, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
D28V9, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  I              1             47
  II             6             76
  III            2             58
  IV             1             28

Clustering(29) Variable = KIAA1804 MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  KIAA1804 MUTATED    9  0
  KIAA1804 WILD-TYPE 97 14
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 9                111 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 0                 14 
$`KIAA1804 MUTATED`
TCGA-AA-3555 TCGA-AA-3966 TCGA-AA-A010 TCGA-AF-2691 TCGA-AG-3582 TCGA-AG-3727 
        0.99         1.02        20.98        10.62         1.02         0.95 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A02N 
       20.94        13.91        61.94 

$`KIAA1804 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 
       18.02        40.93        16.31         0.95        15.85        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02         1.02         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
              0.95               0.92 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
             61.94              72.07 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
             10.62              10.98 
[1] "0.9 - 61.9 (10.6)" "0.9 - 72.1 (11.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      6    9
  KIAA1804 WILD-TYPE  148   59
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON                 6                148
  RECTUM                9                 59
D29V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      9    6
  KIAA1804 WILD-TYPE   98  111
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  FEMALE                9                 98
  MALE                  6                111
D29V5, multiclass
                                clus
vv                               KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         8                 49
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
D29V6, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3               11                139
  T4                1                 16
D29V7, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  N0               10                124
  N1                4                 40
  N2                1                 45
D29V8, multiclass
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  M0                13                176
  M1                 2                 29
  M1A                0                  1
D29V9, multiclass
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  I                  3                 45
  II                 7                 75
  III                3                 57
  IV                 2                 27

Clustering(30) Variable = KRTAP5-5 MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  KRTAP5-5 MUTATED     2   0
  KRTAP5-5 WILD-TYPE 104  14
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                118 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 0                 14 
$`KRTAP5-5 MUTATED`
TCGA-A6-2676 TCGA-AG-A00Y 
       14.70        23.01 

$`KRTAP5-5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             14.70               0.92 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             23.01              72.07 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
            18.855             10.770 
[1] "14.7 - 23.0 (18.9)" "0.9 - 72.1 (10.8)" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3810 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3526         TCGA-AA-3555 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3666         TCGA-AA-3679 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3710         TCGA-AA-3715 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3818         TCGA-AA-3837 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A011         TCGA-AG-A014 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  152   66
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON                 2                152
  RECTUM                2                 66
D30V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  105  115
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                2                105
  MALE                  2                115
D30V5, multiclass
                                clus
vv                               KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON ADENOCARCINOMA                          1                127
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D30V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                3                147
  T4                0                 17
D30V7, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                0                 46
D30V8, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0                 4                185
  M1                 0                 31
  M1A                0                  1
D30V9, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  I                  0                 48
  II                 4                 78
  III                0                 60
  IV                 0                 29

Clustering(31) Variable = SLITRK1 MUTATION ANALYSIS
D31V1, survival
                   sevent
clus2                0  1
  SLITRK1 MUTATED   10  1
  SLITRK1 WILD-TYPE 96 13
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               11               109 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
                1                13 
$`SLITRK1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A010 
        0.99         0.99         1.02         0.99         1.02        20.98 
TCGA-AG-3727 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        0.95        20.94        23.01        17.03        15.91 

$`SLITRK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
             0.95              0.92 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
            23.01             72.07 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
             1.02             10.98 
[1] "0.9 - 23.0 (1.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     10    5
  SLITRK1 WILD-TYPE  144   63
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON               10               144
  RECTUM               5                63
D31V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED      4   11
  SLITRK1 WILD-TYPE  103  106
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  FEMALE               4               103
  MALE                11               106
D31V5, multiclass
                                clus
vv                               SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        5                52
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D31V6, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  T1               0                 9
  T2               7                40
  T3               6               144
  T4               2                15
D31V7, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  N0              12               122
  N1               2                42
  N2               1                45
D31V8, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  M0               14               175
  M1                0                31
  M1A               0                 1
D31V9, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  I                 5                43
  II                6                76
  III               3                57
  IV                0                29

Clustering(32) Variable = ZFHX4 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  ZFHX4 MUTATED   13  4
  ZFHX4 WILD-TYPE 93 10
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             103 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
              4              10 
$`ZFHX4 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3848 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02H TCGA-AY-4071 TCGA-AG-3892 
        1.02         4.01        20.98         2.01         0.95         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A00H 
        0.99         1.02         1.02        20.94        25.94 

$`ZFHX4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 
        0.99         1.02         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-4007 
        1.02         0.95         0.99         0.92         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        1.02        13.91         6.02        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           0.95            0.92 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          25.94           72.07 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           1.02           13.02 
[1] "0.9 - 25.9 (1.0)"  "0.9 - 72.1 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
[1] "hr=" "6.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     16    7
  ZFHX4 WILD-TYPE  138   61
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON             16             138
  RECTUM             7              61
D32V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     14   10
  ZFHX4 WILD-TYPE   93  107
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  FEMALE            14              93
  MALE              10             107
D32V5, multiclass
                                clus
vv                               ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D32V6, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  T1             3               6
  T2             4              43
  T3            13             137
  T4             4              13
D32V7, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  N0            19             115
  N1             2              42
  N2             3              43
D32V8, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  M0             21             168
  M1              1              30
  M1A             0               1
D32V9, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  I               6              42
  II             12              70
  III             4              56
  IV              1              28

Clustering(33) Variable = ARID1A MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   14  0
  ARID1A WILD-TYPE 92 14
  ARID1A MUTATED ARID1A WILD-TYPE 
              14              106 
  ARID1A MUTATED ARID1A WILD-TYPE 
               0               14 
$`ARID1A MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00J 
       14.70         0.99         0.99        18.02        30.02        18.02 
TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01R TCGA-AG-3878 TCGA-AG-3892 
       17.00        20.98        15.02        35.01         0.99         1.02 
TCGA-AG-A00H TCGA-AG-A025 
       25.94        49.94 

$`ARID1A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.95         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.99             0.92 
  ARID1A MUTATED ARID1A WILD-TYPE 
           49.94            72.07 
  ARID1A MUTATED ARID1A WILD-TYPE 
          17.510            9.765 
[1] "1.0 - 49.9 (17.5)" "0.9 - 72.1 (9.8)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr="     "8.4e+07"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     16    5
  ARID1A WILD-TYPE  138   63
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  COLON              16              138
  RECTUM              5               63
D33V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     12    9
  ARID1A WILD-TYPE   95  108
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             12               95
  MALE                9              108
D33V5, multiclass
                                clus
vv                               ARID1A MUTATED ARID1A WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D33V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                7
  T2              2               45
  T3             13              137
  T4              3               14
D33V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             17              117
  N1              1               43
  N2              3               43
D33V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  M0              20              169
  M1               1               30
  M1A              0                1
D33V9, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                4               44
  II              13               69
  III              3               57
  IV               1               28

Clustering(34) Variable = EPHA3 MUTATION ANALYSIS
D34V1, survival
                 sevent
clus2               0   1
  EPHA3 MUTATED     6   0
  EPHA3 WILD-TYPE 100  14
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              6             114 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              0              14 
$`EPHA3 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         1.02        30.02        20.98         1.02 

$`EPHA3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  EPHA3 MUTATED EPHA3 WILD-TYPE 
           0.99            0.92 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
          30.02           72.07 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
           1.02           11.49 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     13    3
  EPHA3 WILD-TYPE  141   65
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D34V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     10    6
  EPHA3 WILD-TYPE   97  111
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  FEMALE            10              97
  MALE               6             111
D34V5, multiclass
                                clus
vv                               EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D34V6, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  T1             1               8
  T2             1              46
  T3            12             138
  T4             2              15
D34V7, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             5              41
D34V8, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D34V9, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  I               2              46
  II              7              75
  III             5              55
  IV              2              27

Clustering(35) Variable = CTNNB1 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2                0   1
  CTNNB1 MUTATED     5   1
  CTNNB1 WILD-TYPE 101  13
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               6              114 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               1               13 
$`CTNNB1 MUTATED`
TCGA-A6-2678 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A01K TCGA-AG-3892 TCGA-AG-A020 
       14.37         4.01        17.00        13.02         1.02        10.98 

$`CTNNB1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W 
       18.02        17.00        27.02        27.02         0.99        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
            1.02             0.92 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           17.00            72.07 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           12.00            10.77 
[1] "1.0 - 17.0 (12.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr=" "1.8"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    4
  CTNNB1 WILD-TYPE  147   64
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D35V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    4
  CTNNB1 WILD-TYPE  100  113
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
D35V5, multiclass
                                clus
vv                               CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D35V6, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              9              141
  T4              1               16
D35V7, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  N0              6              128
  N1              4               40
  N2              1               45
D35V8, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  M0              10              179
  M1               1               30
  M1A              0                1
D35V9, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  I                1               47
  II               5               77
  III              4               56
  IV               1               28

Clustering(36) Variable = OR6N1 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2               0   1
  OR6N1 MUTATED     6   1
  OR6N1 WILD-TYPE 100  13
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              7             113 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              1              13 
$`OR6N1 MUTATED`
TCGA-AA-3710 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01P TCGA-AA-A01V 
        1.02         0.99         1.02        30.02        38.07        35.01 
TCGA-AG-A002 
       20.94 

$`OR6N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR6N1 MUTATED OR6N1 WILD-TYPE 
           0.99            0.92 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          38.07           72.07 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          20.94           10.92 
[1] "1.0 - 38.1 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      8    2
  OR6N1 WILD-TYPE  146   66
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D36V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      4    6
  OR6N1 WILD-TYPE  103  111
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  FEMALE             4             103
  MALE               6             111
D36V5, multiclass
                                clus
vv                               OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D36V6, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             1              16
D36V7, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  N0             6             128
  N1             3              41
  N2             1              45
D36V8, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D36V9, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  I               2              46
  II              3              79
  III             3              57
  IV              1              28

Clustering(37) Variable = DNAH5 MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  DNAH5 MUTATED   17  2
  DNAH5 WILD-TYPE 89 12
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             19             101 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
              2              12 
$`DNAH5 MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3842 
       16.54         8.09         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00N 
        0.99         0.99         1.02        18.02        19.00         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A03J TCGA-AF-2691 TCGA-AG-3892 TCGA-AG-A002 
       20.98        51.95        40.93        10.62         1.02        20.94 
TCGA-AG-A02N 
       61.94 

$`DNAH5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3844 
        0.99         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        13.94        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 
       39.95        18.02        16.31         0.95        15.85        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  DNAH5 MUTATED DNAH5 WILD-TYPE 
           0.99            0.92 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
          61.94           72.07 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
           8.09           12.00 
[1] "1.0 - 61.9 (8.1)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
[1] "hr=" "1.3"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     28    6
  DNAH5 WILD-TYPE  126   62
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON             28             126
  RECTUM             6              62
D37V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     18   16
  DNAH5 WILD-TYPE   89  101
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  FEMALE            18              89
  MALE              16             101
D37V5, multiclass
                                clus
vv                               DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON ADENOCARCINOMA                      22             106
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D37V6, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  T1             3               6
  T2             7              40
  T3            20             130
  T4             4              13
D37V7, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  N0            25             109
  N1             4              40
  N2             5              41
D37V8, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  M0             29             160
  M1              4              27
  M1A             0               1
D37V9, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  I               7              41
  II             17              65
  III             5              55
  IV              4              25

Clustering(38) Variable = KIAA1486 MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                 0  1
  KIAA1486 MUTATED    8  2
  KIAA1486 WILD-TYPE 98 12
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                10                110 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 2                 12 
$`KIAA1486 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02O 
        0.99         1.02         4.01        20.98        35.01         0.92 
TCGA-AY-4070 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
       16.31         1.02         0.99        20.94 

$`KIAA1486 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        5.03        40.96        39.95        18.02        40.93         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.92         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              0.92               0.92 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             35.01              72.07 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             2.515             11.490 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
[1] "hr=" "2.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      9    4
  KIAA1486 WILD-TYPE  145   64
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON                 9                145
  RECTUM                4                 64
D38V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      6    7
  KIAA1486 WILD-TYPE  101  110
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  FEMALE                6                101
  MALE                  7                110
D38V5, multiclass
                                clus
vv                               KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON ADENOCARCINOMA                          6                122
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D38V6, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3                8                142
  T4                2                 15
D38V7, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  N0                8                126
  N1                2                 42
  N2                3                 43
D38V8, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  M0                13                176
  M1                 0                 31
  M1A                0                  1
D38V9, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  I                  3                 45
  II                 5                 77
  III                5                 55
  IV                 0                 29

Clustering(39) Variable = ROBO1 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  ROBO1 MUTATED   11  1
  ROBO1 WILD-TYPE 95 13
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             12             108 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              1              13 
$`ROBO1 MUTATED`
TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-3966 
       10.92         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
        4.01        20.98         0.92         1.02         1.02        20.94 

$`ROBO1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ROBO1 MUTATED ROBO1 WILD-TYPE 
           0.92            0.92 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          20.98           72.07 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
           1.02           12.36 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.4)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     14    4
  ROBO1 WILD-TYPE  140   64
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON             14             140
  RECTUM             4              64
D39V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      7   11
  ROBO1 WILD-TYPE  100  106
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  FEMALE             7             100
  MALE              11             106
D39V5, multiclass
                                clus
vv                               ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D39V6, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            11             139
  T4             4              13
D39V7, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  N0            13             121
  N1             2              42
  N2             3              43
D39V8, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  M0             16             173
  M1              2              29
  M1A             0               1
D39V9, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  I               2              46
  II             11              71
  III             3              57
  IV              2              27

Clustering(40) Variable = TLL1 MUTATION ANALYSIS
D40V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED    7  2
  TLL1 WILD-TYPE 99 12
  TLL1 MUTATED TLL1 WILD-TYPE 
             9            111 
  TLL1 MUTATED TLL1 WILD-TYPE 
             2             12 
$`TLL1 MUTATED`
TCGA-AA-3837 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K 
        1.02        13.94        30.02         4.01        20.98        13.02 
TCGA-AY-4070 TCGA-AG-3893 TCGA-AG-A002 
       16.31         0.99        20.94 

$`TLL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        0.92        40.96        39.95        18.02        40.93         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  TLL1 MUTATED TLL1 WILD-TYPE 
          0.99           0.92 
  TLL1 MUTATED TLL1 WILD-TYPE 
         30.02          72.07 
  TLL1 MUTATED TLL1 WILD-TYPE 
         13.94          10.62 
[1] "1.0 - 30.0 (13.9)" "0.9 - 72.1 (10.6)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
[1] "hr=" "2.2"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     11    4
  TLL1 WILD-TYPE  143   64
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D40V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      6    9
  TLL1 WILD-TYPE  101  108
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D40V5, multiclass
                                clus
vv                               TLL1 MUTATED TLL1 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D40V6, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            2             15
D40V7, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  N0           10            124
  N1            2             42
  N2            3             43
D40V8, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  M0            15            174
  M1             0             31
  M1A            0              1
D40V9, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  I              2             46
  II             8             74
  III            5             55
  IV             0             29

Clustering(41) Variable = TMEM132D MUTATION ANALYSIS
D41V1, survival
                    sevent
clus2                 0  1
  TMEM132D MUTATED   12  1
  TMEM132D WILD-TYPE 94 13
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                13                107 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                 1                 13 
$`TMEM132D MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3844 TCGA-AA-3947 TCGA-AA-3949 
       16.54         1.02         0.99         0.92         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01R TCGA-AA-A01T TCGA-AG-A002 
        1.02         4.01         0.99        35.01        33.04        20.94 
TCGA-AG-A02N 
       61.94 

$`TMEM132D WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02        38.07         1.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  TMEM132D MUTATED TMEM132D WILD-TYPE 
              0.92               0.92 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
             61.94              72.07 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
              1.02              12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
[1] "hr=" "1.3"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     15    4
  TMEM132D WILD-TYPE  139   64
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON                15                139
  RECTUM                4                 64
D41V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    9
  TMEM132D WILD-TYPE   97  108
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  FEMALE               10                 97
  MALE                  9                108
D41V5, multiclass
                                clus
vv                               TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON ADENOCARCINOMA                         10                118
  COLON MUCINOUS ADENOCARCINOMA                 5                 19
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D41V6, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  T1                0                  9
  T2                4                 43
  T3               13                137
  T4                2                 15
D41V7, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  N0               11                123
  N1                4                 40
  N2                4                 42
D41V8, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  M0                18                171
  M1                 0                 31
  M1A                0                  1
D41V9, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  I                  3                 45
  II                 7                 75
  III                8                 52
  IV                 0                 29

Clustering(42) Variable = ERBB4 MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  ERBB4 MUTATED    9  3
  ERBB4 WILD-TYPE 97 11
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             12             108 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              3              11 
$`ERBB4 MUTATED`
TCGA-A6-2672 TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AY-4071 TCGA-AG-3581 TCGA-AG-3599 TCGA-AG-A002 TCGA-AG-A02N 
        1.02         0.95         1.02         0.99        20.94        61.94 

$`ERBB4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 
       10.62        13.55        12.72        10.39         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  ERBB4 MUTATED ERBB4 WILD-TYPE 
           0.95            0.92 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
          61.94           72.07 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
           1.02           12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
[1] "hr=" "3.1"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     13    4
  ERBB4 WILD-TYPE  141   64
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D42V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    8
  ERBB4 WILD-TYPE   97  109
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  FEMALE            10              97
  MALE               8             109
D42V5, multiclass
                                clus
vv                               ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D42V6, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  T1             2               7
  T2             4              43
  T3             9             141
  T4             3              14
D42V7, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             0              46
D42V8, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
D42V9, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  I               6              42
  II             10              72
  III             2              58
  IV              0              29

Clustering(43) Variable = RYR2 MUTATION ANALYSIS
D43V1, survival
                sevent
clus2             0  1
  RYR2 MUTATED   18  3
  RYR2 WILD-TYPE 88 11
  RYR2 MUTATED RYR2 WILD-TYPE 
            21             99 
  RYR2 MUTATED RYR2 WILD-TYPE 
             3             11 
$`RYR2 MUTATED`
TCGA-A6-3807 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 
       10.92         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01Z 
        1.02         4.01        20.98        13.02        35.01        20.98 
TCGA-AA-A029 TCGA-AA-A02Y TCGA-AY-4070 TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
       51.95        39.95        16.31         1.02         1.02        20.94 
TCGA-AG-A01W TCGA-AG-A025 TCGA-AG-A036 
       70.03        49.94        72.07 

$`RYR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        39.06        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       40.96        18.02        40.93         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
        1.02        12.00        63.98        10.98         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       61.94        40.96        38.01 

  RYR2 MUTATED RYR2 WILD-TYPE 
          0.99           0.92 
  RYR2 MUTATED RYR2 WILD-TYPE 
         72.07          63.98 
  RYR2 MUTATED RYR2 WILD-TYPE 
         13.02          10.62 
[1] "1.0 - 72.1 (13.0)" "0.9 - 64.0 (10.6)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     22    7
  RYR2 WILD-TYPE  132   61
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  COLON            22            132
  RECTUM            7             61
D43V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     16   13
  RYR2 WILD-TYPE   91  104
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  FEMALE           16             91
  MALE             13            104
D43V5, multiclass
                                clus
vv                               RYR2 MUTATED RYR2 WILD-TYPE
  COLON ADENOCARCINOMA                     18            110
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D43V6, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           20            130
  T4            4             13
D43V7, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  N0           16            118
  N1            6             38
  N2            7             39
D43V8, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  M0            25            164
  M1             3             28
  M1A            0              1
D43V9, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  I              4             44
  II            11             71
  III           10             50
  IV             3             26

Clustering(44) Variable = OTOL1 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2               0   1
  OTOL1 MUTATED     4   0
  OTOL1 WILD-TYPE 102  14
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              4             116 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              0              14 
$`OTOL1 MUTATED`
TCGA-AA-A010 TCGA-AA-A01S TCGA-AA-A03J TCGA-AG-A002 
       20.98         1.02        40.93        20.94 

$`OTOL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OTOL1 MUTATED OTOL1 WILD-TYPE 
           1.02            0.92 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          40.93           72.07 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          20.96           10.77 
[1] "1.0 - 40.9 (21.0)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      7    1
  OTOL1 WILD-TYPE  147   67
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON              7             147
  RECTUM             1              67
D44V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      4    4
  OTOL1 WILD-TYPE  103  113
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D44V5, multiclass
                                clus
vv                               OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D44V6, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             2             148
  T4             2              15
D44V7, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  N0             4             130
  N1             3              41
  N2             1              45
D44V8, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D44V9, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  I               2              46
  II              2              80
  III             4              56
  IV              0              29

Clustering(45) Variable = GRIK3 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  GRIK3 MUTATED    7  1
  GRIK3 WILD-TYPE 99 13
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              8             112 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              1              13 
$`GRIK3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A01I TCGA-AA-A02O 
        1.02         1.02        18.02         4.01        12.00         0.92 
TCGA-AG-A002 TCGA-AG-A011 
       20.94        17.03 

$`GRIK3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  GRIK3 MUTATED GRIK3 WILD-TYPE 
           0.92            0.92 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          20.94           72.07 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          8.005          10.950 
[1] "0.9 - 20.9 (8.0)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     14    3
  GRIK3 WILD-TYPE  140   65
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON             14             140
  RECTUM             3              65
D45V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED      5   12
  GRIK3 WILD-TYPE  102  105
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  FEMALE             5             102
  MALE              12             105
D45V5, multiclass
                                clus
vv                               GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D45V6, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            11             139
  T4             1              16
D45V7, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
D45V8, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D45V9, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  I               4              44
  II              9              73
  III             1              59
  IV              2              27

Clustering(46) Variable = ADAM29 MUTATION ANALYSIS
D46V1, survival
                  sevent
clus2               0  1
  ADAM29 MUTATED    8  0
  ADAM29 WILD-TYPE 98 14
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               8              112 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               0               14 
$`ADAM29 MUTATED`
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00R TCGA-AA-A02F TCGA-AA-A02W 
        0.99         1.02         1.02         0.99        39.95        40.96 
TCGA-AG-3999 TCGA-AG-A011 
        1.02        17.03 

$`ADAM29 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ADAM29 MUTATED ADAM29 WILD-TYPE 
            0.99             0.92 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
           40.96            72.07 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 41.0 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      9    2
  ADAM29 WILD-TYPE  145   66
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D46V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      8    3
  ADAM29 WILD-TYPE   99  114
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  FEMALE              8               99
  MALE                3              114
D46V5, multiclass
                                clus
vv                               ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D46V6, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              5              145
  T4              1               16
D46V7, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  N0              8              126
  N1              2               42
  N2              1               45
D46V8, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              1                0
D46V9, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  I                4               44
  II               3               79
  III              1               59
  IV               2               27

Clustering(47) Variable = TRPC4 MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  TRPC4 MUTATED    8  1
  TRPC4 WILD-TYPE 98 13
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              9             111 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              1              13 
$`TRPC4 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-A00N 
        0.99         1.02         0.99         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       20.98         1.02        20.94 

$`TRPC4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  TRPC4 MUTATED TRPC4 WILD-TYPE 
           0.99            0.92 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
          20.98           72.07 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
[1] "hr=" "1.8"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     12    5
  TRPC4 WILD-TYPE  142   63
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON             12             142
  RECTUM             5              63
D47V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     10    7
  TRPC4 WILD-TYPE   97  110
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  FEMALE            10              97
  MALE               7             110
D47V5, multiclass
                                clus
vv                               TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D47V6, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  T1             2               7
  T2             1              46
  T3            10             140
  T4             4              13
D47V7, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  N0            12             122
  N1             5              39
  N2             0              46
D47V8, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  M0             16             173
  M1              1              30
  M1A             0               1
D47V9, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  I               3              45
  II              9              73
  III             4              56
  IV              1              28

Clustering(48) Variable = TRPS1 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2              0  1
  TRPS1 MUTATED   11  1
  TRPS1 WILD-TYPE 95 13
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             12             108 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              1              13 
$`TRPS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02        13.94         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02Y TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A02N 
       35.01        35.01        39.95         1.02        20.94        61.94 

$`TRPS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  TRPS1 MUTATED TRPS1 WILD-TYPE 
           0.99            0.92 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          61.94           72.07 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          17.44           10.77 
[1] "1.0 - 61.9 (17.4)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
[1] "hr=" "1.9"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     13    4
  TRPS1 WILD-TYPE  141   64
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D48V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      7   10
  TRPS1 WILD-TYPE  100  107
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
D48V5, multiclass
                                clus
vv                               TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D48V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             4              13
D48V7, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0            15             119
  N1             1              43
  N2             1              45
D48V8, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D48V9, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  I               3              45
  II             11              71
  III             2              58
  IV              0              29

Clustering(49) Variable = CCBP2 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2               0   1
  CCBP2 MUTATED     5   0
  CCBP2 WILD-TYPE 101  14
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              5             115 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              0              14 
$`CCBP2 MUTATED`
TCGA-AA-3710 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02        20.94        13.91        25.94 

$`CCBP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        1.02         1.02         6.02        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CCBP2 MUTATED CCBP2 WILD-TYPE 
           1.02            0.92 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
          25.94           72.07 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
          13.91           10.92 
[1] "1.0 - 25.9 (13.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      5    5
  CCBP2 WILD-TYPE  149   63
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON              5             149
  RECTUM             5              63
D49V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      6    4
  CCBP2 WILD-TYPE  101  113
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D49V5, multiclass
                                clus
vv                               CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D49V6, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             0              17
D49V7, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             0              46
D49V8, multiclass
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D49V9, multiclass
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  I               4              44
  II              4              78
  III             1              59
  IV              1              28

Clustering(50) Variable = CDH2 MUTATION ANALYSIS
D50V1, survival
                sevent
clus2             0  1
  CDH2 MUTATED   11  1
  CDH2 WILD-TYPE 95 13
  CDH2 MUTATED CDH2 WILD-TYPE 
            12            108 
  CDH2 MUTATED CDH2 WILD-TYPE 
             1             13 
$`CDH2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E 
        9.14         1.02         1.02         0.99         1.02        30.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A029 TCGA-AG-A002 TCGA-AG-A02N 
        4.01        20.98         1.02        51.95        20.94        61.94 

$`CDH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F 
       33.04        35.01        26.01        20.98        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CDH2 MUTATED CDH2 WILD-TYPE 
          0.99           0.92 
  CDH2 MUTATED CDH2 WILD-TYPE 
         61.94          72.07 
  CDH2 MUTATED CDH2 WILD-TYPE 
         6.575         11.490 
[1] "1.0 - 61.9 (6.6)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
[1] "hr=" "1.7"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     12    4
  CDH2 WILD-TYPE  142   64
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  COLON            12            142
  RECTUM            4             64
D50V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED      6   10
  CDH2 WILD-TYPE  101  107
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  FEMALE            6            101
  MALE             10            107
D50V5, multiclass
                                clus
vv                               CDH2 MUTATED CDH2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D50V6, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            3             14
D50V7, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  N0           14            120
  N1            2             42
  N2            0             46
D50V8, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  M0            14            175
  M1             0             31
  M1A            1              0
D50V9, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  I              1             47
  II            12             70
  III            1             59
  IV             1             28

Clustering(51) Variable = OPCML MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  OPCML MUTATED    8  0
  OPCML WILD-TYPE 98 14
  OPCML MUTATED OPCML WILD-TYPE 
              8             112 
  OPCML MUTATED OPCML WILD-TYPE 
              0              14 
$`OPCML MUTATED`
TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-A002 
        0.92         0.99         1.02        20.98         1.02        20.94 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

$`OPCML WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A036 
        1.94        38.93        61.94        72.07 

  OPCML MUTATED OPCML WILD-TYPE 
           0.92            0.92 
  OPCML MUTATED OPCML WILD-TYPE 
          40.96           72.07 
  OPCML MUTATED OPCML WILD-TYPE 
          10.98           10.95 
[1] "0.9 - 41.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
[1] "hr="     "7.4e+07"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      4    6
  OPCML WILD-TYPE  150   62
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  COLON              4             150
  RECTUM             6              62
D51V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      5    5
  OPCML WILD-TYPE  102  112
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D51V5, multiclass
                                clus
vv                               OPCML MUTATED OPCML WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D51V6, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             1              16
D51V7, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  N0             6             128
  N1             2              42
  N2             2              44
D51V8, multiclass
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D51V9, multiclass
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  I               3              45
  II              2              80
  III             3              57
  IV              1              28

Clustering(52) Variable = NCAM2 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  NCAM2 MUTATED    8  1
  NCAM2 WILD-TYPE 98 13
  NCAM2 MUTATED NCAM2 WILD-TYPE 
              9             111 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
              1              13 
$`NCAM2 MUTATED`
TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K 
        0.99         0.99         1.02         4.01        20.98        13.02 
TCGA-AG-3892 TCGA-AG-4008 TCGA-AG-A002 
        1.02         1.02        20.94 

$`NCAM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  NCAM2 MUTATED NCAM2 WILD-TYPE 
           0.99            0.92 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
          20.98           72.07 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
[1] "hr=" "1.5"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      7    5
  NCAM2 WILD-TYPE  147   63
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON              7             147
  RECTUM             5              63
D52V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      6    6
  NCAM2 WILD-TYPE  101  111
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D52V5, multiclass
                                clus
vv                               NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D52V6, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             5             145
  T4             2              15
D52V7, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             2              44
D52V8, multiclass
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D52V9, multiclass
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  I               4              44
  II              4              78
  III             2              58
  IV              1              28

Clustering(53) Variable = FLG MUTATION ANALYSIS
D53V1, survival
               sevent
clus2            0  1
  FLG MUTATED   16  4
  FLG WILD-TYPE 90 10
  FLG MUTATED FLG WILD-TYPE 
           20           100 
  FLG MUTATED FLG WILD-TYPE 
            4            10 
$`FLG MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3952 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V 
        1.02         4.01         0.99        20.98        35.01        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AY-4071 TCGA-AG-3582 TCGA-AG-A002 
       20.98        39.06        51.95         0.95         1.02        20.94 
TCGA-AG-A011 TCGA-AG-A01L 
       17.03        12.00 

$`FLG WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02        38.07         1.02         1.02        33.04        26.01 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       18.02        40.93        16.31        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FLG MUTATED FLG WILD-TYPE 
         0.95          0.92 
  FLG MUTATED FLG WILD-TYPE 
        51.95         72.07 
  FLG MUTATED FLG WILD-TYPE 
        6.575        11.490 
[1] "0.9 - 52.0 (6.6)"  "0.9 - 72.1 (11.5)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
[1] "hr=" "2"  
D53V2, continuous
D53V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     25    6
  FLG WILD-TYPE  129   62
        clus
vv       FLG MUTATED FLG WILD-TYPE
  COLON           25           129
  RECTUM           6            62
D53V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     15   17
  FLG WILD-TYPE   92  100
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          15            92
  MALE            17           100
D53V5, multiclass
                                clus
vv                               FLG MUTATED FLG WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            8            16
  RECTAL ADENOCARCINOMA                    5            52
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D53V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1           2             7
  T2           7            40
  T3          19           131
  T4           4            13
D53V7, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  N0          24           110
  N1           4            40
  N2           4            42
D53V8, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  M0           28           161
  M1            2            29
  M1A           0             1
D53V9, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  I             8            40
  II           15            67
  III           6            54
  IV            2            27

Clustering(54) Variable = OR2L13 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2                0   1
  OR2L13 MUTATED     3   1
  OR2L13 WILD-TYPE 103  13
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               4              116 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               1               13 
$`OR2L13 MUTATED`
TCGA-AA-3710 TCGA-AG-A002 TCGA-AG-A026 TCGA-AG-A02N 
        1.02        20.94         1.94        61.94 

$`OR2L13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98        49.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR2L13 MUTATED OR2L13 WILD-TYPE 
            1.02             0.92 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           61.94            72.07 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           11.44            10.95 
[1] "1.0 - 61.9 (11.4)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
[1] "hr=" "1.6"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      7    3
  OR2L13 WILD-TYPE  147   65
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D54V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      4    6
  OR2L13 WILD-TYPE  103  111
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  FEMALE              4              103
  MALE                6              111
D54V5, multiclass
                                clus
vv                               OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D54V6, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              7              143
  T4              1               16
D54V7, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              1               45
D54V8, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D54V9, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  I                2               46
  II               6               76
  III              1               59
  IV               1               28

Clustering(55) Variable = BAI3 MUTATION ANALYSIS
D55V1, survival
                sevent
clus2             0  1
  BAI3 MUTATED   10  1
  BAI3 WILD-TYPE 96 13
  BAI3 MUTATED BAI3 WILD-TYPE 
            11            109 
  BAI3 MUTATED BAI3 WILD-TYPE 
             1             13 
$`BAI3 MUTATED`
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         0.99         4.01        20.98 
TCGA-AA-A01G TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A02N 
       12.00         1.02        20.94        23.01        61.94 

$`BAI3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         1.02         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 
        1.02         1.02        13.91         6.02        25.94        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  BAI3 MUTATED BAI3 WILD-TYPE 
          0.99           0.92 
  BAI3 MUTATED BAI3 WILD-TYPE 
         61.94          72.07 
  BAI3 MUTATED BAI3 WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 61.9 (4.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     12    6
  BAI3 WILD-TYPE  142   62
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  COLON            12            142
  RECTUM            6             62
D55V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      9    9
  BAI3 WILD-TYPE   98  108
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  FEMALE            9             98
  MALE              9            108
D55V5, multiclass
                                clus
vv                               BAI3 MUTATED BAI3 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D55V6, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            9            141
  T4            4             13
D55V7, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  N0           15            119
  N1            1             43
  N2            2             44
D55V8, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  M0            16            173
  M1             2             29
  M1A            0              1
D55V9, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  I              5             43
  II            10             72
  III            1             59
  IV             2             27

Clustering(56) Variable = ATM MUTATION ANALYSIS
D56V1, survival
               sevent
clus2            0  1
  ATM MUTATED   13  1
  ATM WILD-TYPE 93 13
  ATM MUTATED ATM WILD-TYPE 
           14           106 
  ATM MUTATED ATM WILD-TYPE 
            1            13 
$`ATM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02Y TCGA-AG-3727 
        1.02         4.01        20.98        35.01        39.95         0.95 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`ATM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ATM MUTATED ATM WILD-TYPE 
         0.95          0.92 
  ATM MUTATED ATM WILD-TYPE 
        39.95         72.07 
  ATM MUTATED ATM WILD-TYPE 
         1.02         12.00 
[1] "0.9 - 40.0 (1.0)"  "0.9 - 72.1 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
[1] "hr=" "1.3"
D56V2, continuous
D56V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     21    4
  ATM WILD-TYPE  133   64
        clus
vv       ATM MUTATED ATM WILD-TYPE
  COLON           21           133
  RECTUM           4            64
D56V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     16    9
  ATM WILD-TYPE   91  108
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE          16            91
  MALE             9           108
D56V5, multiclass
                                clus
vv                               ATM MUTATED ATM WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            5            19
  RECTAL ADENOCARCINOMA                    4            53
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D56V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           1             8
  T2           5            42
  T3          16           134
  T4           3            14
D56V7, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  N0          17           117
  N1           3            41
  N2           5            41
D56V8, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  M0           23           166
  M1            1            30
  M1A           0             1
D56V9, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  I             4            44
  II           12            70
  III           7            53
  IV            1            28

Clustering(57) Variable = UBE2NL MUTATION ANALYSIS
D57V1, survival
                  sevent
clus2                0   1
  UBE2NL MUTATED     6   0
  UBE2NL WILD-TYPE 100  14
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               6              114 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               0               14 
$`UBE2NL MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A017 TCGA-AG-A002 TCGA-AG-A032 
        0.99         1.02        20.98        15.02        20.94        38.01 

$`UBE2NL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
       49.94         1.94        38.93        61.94        40.96        72.07 

  UBE2NL MUTATED UBE2NL WILD-TYPE 
            0.99             0.92 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
           38.01            72.07 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
           17.98            10.77 
[1] "1.0 - 38.0 (18.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
[1] "hr="     "2.7e+07"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      5    2
  UBE2NL WILD-TYPE  149   66
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D57V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      4    3
  UBE2NL WILD-TYPE  103  114
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D57V5, multiclass
                                clus
vv                               UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D57V6, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
D57V7, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
D57V8, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D57V9, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  I                1               47
  II               3               79
  III              2               58
  IV               0               29

Clustering(58) Variable = PTPRM MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  PTPRM MUTATED   12  3
  PTPRM WILD-TYPE 94 11
  PTPRM MUTATED PTPRM WILD-TYPE 
             15             105 
  PTPRM MUTATED PTPRM WILD-TYPE 
              3              11 
$`PTPRM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
       30.02         4.01        20.98         1.02         0.99         0.99 
TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A036 
       20.94        61.94        72.07 

$`PTPRM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       38.93        40.96        38.01 

  PTPRM MUTATED PTPRM WILD-TYPE 
           0.99            0.92 
  PTPRM MUTATED PTPRM WILD-TYPE 
          72.07           70.03 
  PTPRM MUTATED PTPRM WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 72.1 (1.0)"  "0.9 - 70.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
[1] "hr=" "2.1"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     14    6
  PTPRM WILD-TYPE  140   62
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D58V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED      8   12
  PTPRM WILD-TYPE   99  105
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  FEMALE             8              99
  MALE              12             105
D58V5, multiclass
                                clus
vv                               PTPRM MUTATED PTPRM WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D58V6, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  T1             1               8
  T2             2              45
  T3            14             136
  T4             3              14
D58V7, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  N0            14             120
  N1             3              41
  N2             3              43
D58V8, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
D58V9, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  I               2              46
  II             11              71
  III             5              55
  IV              1              28

Clustering(59) Variable = IL1RAPL2 MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  IL1RAPL2 MUTATED    7  0
  IL1RAPL2 WILD-TYPE 99 14
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 7                113 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 0                 14 
$`IL1RAPL2 MUTATED`
TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00O TCGA-AA-A01K TCGA-AG-3887 TCGA-AG-3894 
        0.99         0.99        27.02        13.02         0.92         0.99 
TCGA-AG-A002 
       20.94 

$`IL1RAPL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
              0.92               0.92 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
             27.02              72.07 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
              0.99              10.98 
[1] "0.9 - 27.0 (1.0)"  "0.9 - 72.1 (11.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      5    5
  IL1RAPL2 WILD-TYPE  149   63
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON                 5                149
  RECTUM                5                 63
D59V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      7    3
  IL1RAPL2 WILD-TYPE  100  114
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  FEMALE                7                100
  MALE                  3                114
D59V5, multiclass
                                clus
vv                               IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         3                 54
  RECTAL MUCINOUS ADENOCARCINOMA                2                  6
D59V6, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                8                142
  T4                1                 16
D59V7, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  N0                6                128
  N1                2                 42
  N2                2                 44
D59V8, multiclass
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  M0                10                179
  M1                 0                 31
  M1A                0                  1
D59V9, multiclass
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  I                  1                 47
  II                 5                 77
  III                4                 56
  IV                 0                 29

Clustering(60) Variable = TXNDC3 MUTATION ANALYSIS
D60V1, survival
                  sevent
clus2                0   1
  TXNDC3 MUTATED     6   0
  TXNDC3 WILD-TYPE 100  14
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               6              114 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               0               14 
$`TXNDC3 MUTATED`
TCGA-AA-3811 TCGA-AA-A00D TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01Z TCGA-AG-3892 
        0.99        19.00        21.99        20.98        20.98         1.02 

$`TXNDC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
            0.99             0.92 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           21.99            72.07 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           19.99            10.77 
[1] "1.0 - 22.0 (20.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED     10    1
  TXNDC3 WILD-TYPE  144   67
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON              10              144
  RECTUM              1               67
D60V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      7    4
  TXNDC3 WILD-TYPE  100  113
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
D60V5, multiclass
                                clus
vv                               TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D60V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              7              143
  T4              1               16
D60V7, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              2               44
D60V8, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D60V9, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  I                3               45
  II               5               77
  III              3               57
  IV               0               29

Clustering(61) Variable = MGC42105 MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  MGC42105 MUTATED    7  0
  MGC42105 WILD-TYPE 99 14
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 7                113 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 0                 14 
$`MGC42105 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3977 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-A002 
       20.94 

$`MGC42105 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MGC42105 MUTATED MGC42105 WILD-TYPE 
              0.99               0.92 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
             20.94              72.07 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
              1.02              12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     10    1
  MGC42105 WILD-TYPE  144   67
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON                10                144
  RECTUM                1                 67
D61V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      6    5
  MGC42105 WILD-TYPE  101  112
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                6                101
  MALE                  5                112
D61V5, multiclass
                                clus
vv                               MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                          8                120
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D61V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                1                  8
  T2                4                 43
  T3                6                144
  T4                0                 17
D61V7, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                9                125
  N1                1                 43
  N2                1                 45
D61V8, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                 9                180
  M1                 0                 31
  M1A                0                  1
D61V9, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  I                  2                 46
  II                 5                 77
  III                2                 58
  IV                 0                 29

Clustering(62) Variable = CDH9 MUTATION ANALYSIS
D62V1, survival
                sevent
clus2              0   1
  CDH9 MUTATED     6   3
  CDH9 WILD-TYPE 100  11
  CDH9 MUTATED CDH9 WILD-TYPE 
             9            111 
  CDH9 MUTATED CDH9 WILD-TYPE 
             3             11 
$`CDH9 MUTATED`
TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AY-4071 
        1.02        18.02        30.02         4.01        20.98         0.95 
TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-A002 
       10.39         1.02        20.94 

$`CDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       13.94        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 
       16.31        15.85        10.62        13.55        12.72         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CDH9 MUTATED CDH9 WILD-TYPE 
          0.95           0.92 
  CDH9 MUTATED CDH9 WILD-TYPE 
         30.02          72.07 
  CDH9 MUTATED CDH9 WILD-TYPE 
         10.39          10.98 
[1] "0.9 - 30.0 (10.4)" "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "4"  
D62V2, continuous
D62V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      9    5
  CDH9 WILD-TYPE  145   63
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  COLON             9            145
  RECTUM            5             63
D62V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      6    9
  CDH9 WILD-TYPE  101  108
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D62V5, multiclass
                                clus
vv                               CDH9 MUTATED CDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D62V6, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  T1            2              7
  T2            2             45
  T3            9            141
  T4            2             15
D62V7, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  N0           14            120
  N1            1             43
  N2            0             46
D62V8, multiclass
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
D62V9, multiclass
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  I              3             45
  II            10             72
  III            0             60
  IV             0             29

Clustering(63) Variable = CHRDL1 MUTATION ANALYSIS
D63V1, survival
                  sevent
clus2                0   1
  CHRDL1 MUTATED     5   1
  CHRDL1 WILD-TYPE 101  13
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               6              114 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               1               13 
$`CHRDL1 MUTATED`
TCGA-AA-3844 TCGA-AA-A00N TCGA-AA-A03J TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N 
        0.92         4.01        40.93         1.02        20.94        61.94 

$`CHRDL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
            0.92             0.92 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
           61.94            72.07 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
          12.475           10.950 
[1] "0.9 - 61.9 (12.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      7    4
  CHRDL1 WILD-TYPE  147   64
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D63V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      6    5
  CHRDL1 WILD-TYPE  101  112
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
D63V5, multiclass
                                clus
vv                               CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D63V6, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              6              144
  T4              2               15
D63V7, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  N0              7              127
  N1              2               42
  N2              2               44
D63V8, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D63V9, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  I                3               45
  II               4               78
  III              4               56
  IV               0               29

Clustering(64) Variable = PRIM2 MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2               0   1
  PRIM2 MUTATED     5   2
  PRIM2 WILD-TYPE 101  12
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              7             113 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              2              12 
$`PRIM2 MUTATED`
TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02J TCGA-AA-A02O TCGA-AG-A002 
        0.99         4.01        20.98         5.03         0.92        20.94 
TCGA-AG-A014 
       15.91 

$`PRIM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       39.95         2.01        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        17.03        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.92            0.92 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          20.98           72.07 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
           5.03           10.98 
[1] "0.9 - 21.0 (5.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
[1] "hr=" "3.6"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      5    3
  PRIM2 WILD-TYPE  149   65
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D64V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      3    5
  PRIM2 WILD-TYPE  104  112
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
D64V5, multiclass
                                clus
vv                               PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D64V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             2              15
D64V7, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D64V8, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D64V9, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  I               3              45
  II              3              79
  III             1              59
  IV              1              28

Clustering(65) Variable = FAM133A MUTATION ANALYSIS
D65V1, survival
                   sevent
clus2                 0   1
  FAM133A MUTATED     4   0
  FAM133A WILD-TYPE 102  14
  FAM133A MUTATED FAM133A WILD-TYPE 
                4               116 
  FAM133A MUTATED FAM133A WILD-TYPE 
                0                14 
$`FAM133A MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3583 TCGA-AG-A02X 
        1.02        20.98         2.01        40.96 

$`FAM133A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAM133A MUTATED FAM133A WILD-TYPE 
             1.02              0.92 
  FAM133A MUTATED FAM133A WILD-TYPE 
            40.96             72.07 
  FAM133A MUTATED FAM133A WILD-TYPE 
           11.495            10.950 
[1] "1.0 - 41.0 (11.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
[1] "hr="     "2.6e+07"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      5    2
  FAM133A WILD-TYPE  149   66
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D65V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      4    3
  FAM133A WILD-TYPE  103  114
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  FEMALE               4               103
  MALE                 3               114
D65V5, multiclass
                                clus
vv                               FAM133A MUTATED FAM133A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D65V6, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               1                16
D65V7, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  N0               5               129
  N1               1                43
  N2               1                45
D65V8, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  M0                5               184
  M1                1                30
  M1A               0                 1
D65V9, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  I                 1                47
  II                3                79
  III               1                59
  IV                1                28

Clustering(66) Variable = ANK2 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  ANK2 MUTATED   14  4
  ANK2 WILD-TYPE 92 10
  ANK2 MUTATED ANK2 WILD-TYPE 
            18            102 
  ANK2 MUTATED ANK2 WILD-TYPE 
             4             10 
$`ANK2 MUTATED`
TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3877 TCGA-AA-3977 TCGA-AA-A00N 
       14.70        10.92         1.02         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A02H TCGA-AA-A02O 
       20.98        38.07         1.02        33.04         2.01         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A032 
        1.02        20.94        23.01         1.94        61.94        38.01 

$`ANK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A036 
       63.98        10.98        49.94        38.93        40.96        72.07 

  ANK2 MUTATED ANK2 WILD-TYPE 
          0.92           0.92 
  ANK2 MUTATED ANK2 WILD-TYPE 
         61.94          72.07 
  ANK2 MUTATED ANK2 WILD-TYPE 
         7.465         11.490 
[1] "0.9 - 61.9 (7.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
[1] "hr=" "2.3"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     24    6
  ANK2 WILD-TYPE  130   62
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  COLON            24            130
  RECTUM            6             62
D66V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     17   13
  ANK2 WILD-TYPE   90  104
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  FEMALE           17             90
  MALE             13            104
D66V5, multiclass
                                clus
vv                               ANK2 MUTATED ANK2 WILD-TYPE
  COLON ADENOCARCINOMA                     18            110
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D66V6, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           19            131
  T4            5             12
D66V7, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  N0           19            115
  N1            6             38
  N2            5             41
D66V8, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  M0            26            163
  M1             3             28
  M1A            0              1
D66V9, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  I              4             44
  II            14             68
  III            8             52
  IV             3             26

Clustering(67) Variable = CASP14 MUTATION ANALYSIS
D67V1, survival
                  sevent
clus2                0   1
  CASP14 MUTATED     4   1
  CASP14 WILD-TYPE 102  13
  CASP14 MUTATED CASP14 WILD-TYPE 
               5              115 
  CASP14 MUTATED CASP14 WILD-TYPE 
               1               13 
$`CASP14 MUTATED`
TCGA-AA-3977 TCGA-AA-A01P TCGA-AG-3727 TCGA-AG-4007 TCGA-AG-A002 
        1.02        38.07         0.95         1.02        20.94 

$`CASP14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 
        2.01         1.02         0.99         1.02         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CASP14 MUTATED CASP14 WILD-TYPE 
            0.95             0.92 
  CASP14 MUTATED CASP14 WILD-TYPE 
           38.07            72.07 
  CASP14 MUTATED CASP14 WILD-TYPE 
            1.02            10.98 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
[1] "hr=" "2.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  150   64
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  COLON               4              150
  RECTUM              4               64
D67V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  103  113
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D67V5, multiclass
                                clus
vv                               CASP14 MUTATED CASP14 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D67V6, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
D67V7, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  N0              2              132
  N1              3               41
  N2              3               43
D67V8, multiclass
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  M0               5              184
  M1               2               29
  M1A              0                1
D67V9, multiclass
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  I                1               47
  II               0               82
  III              4               56
  IV               2               27

Clustering(68) Variable = AFF2 MUTATION ANALYSIS
D68V1, survival
                sevent
clus2             0  1
  AFF2 MUTATED    9  1
  AFF2 WILD-TYPE 97 13
  AFF2 MUTATED AFF2 WILD-TYPE 
            10            110 
  AFF2 MUTATED AFF2 WILD-TYPE 
             1             13 
$`AFF2 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3846 TCGA-AA-3949 TCGA-AA-A00N 
       14.70         9.14         8.09         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02Y TCGA-AG-3892 TCGA-AG-A002 
       20.98        39.95         1.02        20.94 

$`AFF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
       10.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  AFF2 MUTATED AFF2 WILD-TYPE 
          0.99           0.92 
  AFF2 MUTATED AFF2 WILD-TYPE 
         39.95          72.07 
  AFF2 MUTATED AFF2 WILD-TYPE 
         8.615         11.490 
[1] "1.0 - 40.0 (8.6)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     15    2
  AFF2 WILD-TYPE  139   66
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  COLON            15            139
  RECTUM            2             66
D68V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED      7   10
  AFF2 WILD-TYPE  100  107
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  FEMALE            7            100
  MALE             10            107
D68V5, multiclass
                                clus
vv                               AFF2 MUTATED AFF2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D68V6, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  T1            1              8
  T2            2             45
  T3           11            139
  T4            2             15
D68V7, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  N0           12            122
  N1            3             41
  N2            2             44
D68V8, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  M0            17            172
  M1             0             31
  M1A            0              1
D68V9, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  I              3             45
  II             9             73
  III            5             55
  IV             0             29

Clustering(69) Variable = MGC26647 MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  MGC26647 MUTATED     3   1
  MGC26647 WILD-TYPE 103  13
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 4                116 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 1                 13 
$`MGC26647 MUTATED`
TCGA-AA-3811 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02W 
        0.99         4.01        20.98        40.96 

$`MGC26647 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  MGC26647 MUTATED MGC26647 WILD-TYPE 
              0.99               0.92 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
             40.96              72.07 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
            12.495             10.950 
[1] "1.0 - 41.0 (12.5)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
[1] "hr=" "1.6"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      7    0
  MGC26647 WILD-TYPE  147   68
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON                 7                147
  RECTUM                0                 68
D69V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE  102  115
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                5                102
  MALE                  2                115
D69V5, multiclass
                                clus
vv                               MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         0                 57
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D69V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                3                147
  T4                2                 15
D69V7, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                128
  N1                0                 44
  N2                1                 45
D69V8, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
D69V9, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  I                  2                 46
  II                 4                 78
  III                1                 59
  IV                 0                 29

Clustering(70) Variable = GABRA5 MUTATION ANALYSIS
D70V1, survival
                  sevent
clus2                0   1
  GABRA5 MUTATED     4   2
  GABRA5 WILD-TYPE 102  12
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               6              114 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               2               12 
$`GABRA5 MUTATED`
TCGA-AA-3679 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01P TCGA-AG-A002 
        0.99         4.01        20.98        15.02        38.07        20.94 

$`GABRA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.92 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           38.07            72.07 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           17.98            10.77 
[1] "1.0 - 38.1 (18.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
[1] "hr=" "2.9"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      8    1
  GABRA5 WILD-TYPE  146   67
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D70V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    4
  GABRA5 WILD-TYPE  102  113
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
D70V5, multiclass
                                clus
vv                               GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D70V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              2               15
D70V7, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              1               45
D70V8, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D70V9, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               1               28

Clustering(71) Variable = ZC3H13 MUTATION ANALYSIS
D71V1, survival
                  sevent
clus2               0  1
  ZC3H13 MUTATED   14  1
  ZC3H13 WILD-TYPE 92 13
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              15              105 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               1               13 
$`ZC3H13 MUTATED`
TCGA-A6-2677 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
       17.79         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A01Q TCGA-AA-A01R TCGA-AF-2691 
        0.99        20.98        13.02         1.02        35.01        10.62 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N 
        1.02        20.94        61.94 

$`ZC3H13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G 
       17.00        14.99        21.99        15.02         0.99        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        38.07         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
       16.31         0.95        15.85        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            0.99             0.92 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           61.94            72.07 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           10.62            10.98 
[1] "1.0 - 61.9 (10.6)" "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr=" "1.8"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     17    4
  ZC3H13 WILD-TYPE  137   64
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON              17              137
  RECTUM              4               64
D71V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     10   11
  ZC3H13 WILD-TYPE   97  106
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE             10               97
  MALE               11              106
D71V5, multiclass
                                clus
vv                               ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D71V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              2                7
  T2              4               43
  T3             11              139
  T4              4               13
D71V7, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0             15              119
  N1              3               41
  N2              3               43
D71V8, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0              20              169
  M1               0               31
  M1A              0                1
D71V9, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  I                5               43
  II               9               73
  III              6               54
  IV               0               29

Clustering(72) Variable = OR51V1 MUTATION ANALYSIS
D72V1, survival
                  sevent
clus2               0  1
  OR51V1 MUTATED    7  0
  OR51V1 WILD-TYPE 99 14
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               7              113 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               0               14 
$`OR51V1 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         0.99        20.98 
TCGA-AA-A01R 
       35.01 

$`OR51V1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR51V1 MUTATED OR51V1 WILD-TYPE 
            0.99             0.92 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
           35.01            72.07 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      9    0
  OR51V1 WILD-TYPE  145   68
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON               9              145
  RECTUM              0               68
D72V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      6    3
  OR51V1 WILD-TYPE  101  114
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  FEMALE              6              101
  MALE                3              114
D72V5, multiclass
                                clus
vv                               OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D72V6, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              5              145
  T4              3               14
D72V7, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              1               45
D72V8, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D72V9, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  I                0               48
  II               8               74
  III              1               59
  IV               0               29

Clustering(73) Variable = EDNRB MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2               0   1
  EDNRB MUTATED     6   0
  EDNRB WILD-TYPE 100  14
  EDNRB MUTATED EDNRB WILD-TYPE 
              6             114 
  EDNRB MUTATED EDNRB WILD-TYPE 
              0              14 
$`EDNRB MUTATED`
TCGA-A6-3810 TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A00H 
        8.09         0.99        20.98         0.99        20.94        25.94 

$`EDNRB WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  EDNRB MUTATED EDNRB WILD-TYPE 
           0.99            0.92 
  EDNRB MUTATED EDNRB WILD-TYPE 
          25.94           72.07 
  EDNRB MUTATED EDNRB WILD-TYPE 
         14.515          10.950 
[1] "1.0 - 25.9 (14.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
[1] "hr="     "2.7e+07"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      6    4
  EDNRB WILD-TYPE  148   64
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  COLON              6             148
  RECTUM             4              64
D73V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      3    7
  EDNRB WILD-TYPE  104  110
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             3             104
  MALE               7             110
D73V5, multiclass
                                clus
vv                               EDNRB MUTATED EDNRB WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D73V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             3              14
D73V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             7             127
  N1             3              41
  N2             0              46
D73V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D73V9, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  I               1              47
  II              6              76
  III             3              57
  IV              0              29

Clustering(74) Variable = CHRM2 MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2               0   1
  CHRM2 MUTATED     4   1
  CHRM2 WILD-TYPE 102  13
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              5             115 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              1              13 
$`CHRM2 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        1.02         0.99         4.01        20.98        20.94 

$`CHRM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           0.99            0.92 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          20.98           72.07 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
[1] "hr=" "2.2"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      8    2
  CHRM2 WILD-TYPE  146   66
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D74V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      6    4
  CHRM2 WILD-TYPE  101  113
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D74V5, multiclass
                                clus
vv                               CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D74V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             4              13
D74V7, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D74V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  M0              7             182
  M1              3              28
  M1A             0               1
D74V9, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               1              47
  II              6              76
  III             0              60
  IV              3              26

Clustering(75) Variable = PCDH11X MUTATION ANALYSIS
D75V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED    7  4
  PCDH11X WILD-TYPE 99 10
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               109 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                4                10 
$`PCDH11X MUTATED`
TCGA-A6-3810 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3952 TCGA-AA-3977 
        8.09         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F TCGA-AG-3892 TCGA-AG-A026 
        4.01        20.98        18.02         1.02         1.94 

$`PCDH11X WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.99              0.92 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            20.98             72.07 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
[1] "hr=" "8.4"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     11    3
  PCDH11X WILD-TYPE  143   65
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON               11               143
  RECTUM               3                65
D75V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      6    8
  PCDH11X WILD-TYPE  101  109
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE               6               101
  MALE                 8               109
D75V5, multiclass
                                clus
vv                               PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D75V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               2                 7
  T2               2                45
  T3               7               143
  T4               3                14
D75V7, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0              12               122
  N1               0                44
  N2               2                44
D75V8, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
D75V9, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  I                 3                45
  II                8                74
  III               2                58
  IV                0                29

Clustering(76) Variable = FAM5C MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2               0   1
  FAM5C MUTATED     6   3
  FAM5C WILD-TYPE 100  11
  FAM5C MUTATED FAM5C WILD-TYPE 
              9             111 
  FAM5C MUTATED FAM5C WILD-TYPE 
              3              11 
$`FAM5C MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01P TCGA-AG-A002 TCGA-AG-A01W 
       38.07        20.94        70.03 

$`FAM5C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.99            0.92 
  FAM5C MUTATED FAM5C WILD-TYPE 
          70.03           72.07 
  FAM5C MUTATED FAM5C WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 70.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "3"  
D76V2, continuous
D76V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     10    3
  FAM5C WILD-TYPE  144   65
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D76V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      9    4
  FAM5C WILD-TYPE   98  113
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             9              98
  MALE               4             113
D76V5, multiclass
                                clus
vv                               FAM5C MUTATED FAM5C WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D76V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             0               9
  T2             4              43
  T3             6             144
  T4             3              14
D76V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
D76V8, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D76V9, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  I               3              45
  II              8              74
  III             1              59
  IV              0              29

Clustering(77) Variable = GPC6 MUTATION ANALYSIS
D77V1, survival
                sevent
clus2             0  1
  GPC6 MUTATED    7  0
  GPC6 WILD-TYPE 99 14
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            113 
  GPC6 MUTATED GPC6 WILD-TYPE 
             0             14 
$`GPC6 MUTATED`
TCGA-A6-3810 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A00U TCGA-AA-A01Q TCGA-AG-3599 
        8.09         0.99        18.02        17.00         1.02         0.99 
TCGA-AG-4007 
        1.02 

$`GPC6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  GPC6 MUTATED GPC6 WILD-TYPE 
          0.99           0.92 
  GPC6 MUTATED GPC6 WILD-TYPE 
         18.02          72.07 
  GPC6 MUTATED GPC6 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      7    3
  GPC6 WILD-TYPE  147   65
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  COLON             7            147
  RECTUM            3             65
D77V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      5    5
  GPC6 WILD-TYPE  102  112
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
D77V5, multiclass
                                clus
vv                               GPC6 MUTATED GPC6 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D77V6, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            5            145
  T4            3             14
D77V7, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  N0            6            128
  N1            2             42
  N2            2             44
D77V8, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  M0             8            181
  M1             2             29
  M1A            0              1
D77V9, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  I              2             46
  II             4             78
  III            2             58
  IV             2             27

Clustering(78) Variable = KCNA4 MUTATION ANALYSIS
D78V1, survival
                 sevent
clus2              0  1
  KCNA4 MUTATED    7  1
  KCNA4 WILD-TYPE 99 13
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              8             112 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              1              13 
$`KCNA4 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        0.99         0.99         1.02         4.01        35.01        40.96 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`KCNA4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  KCNA4 MUTATED KCNA4 WILD-TYPE 
           0.99            0.92 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          40.96           72.07 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED     10    2
  KCNA4 WILD-TYPE  144   66
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D78V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      7    5
  KCNA4 WILD-TYPE  100  112
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D78V5, multiclass
                                clus
vv                               KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D78V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             1              16
D78V7, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             1              45
D78V8, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D78V9, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  I               3              45
  II              6              76
  III             3              57
  IV              0              29

Clustering(79) Variable = SDK1 MUTATION ANALYSIS
D79V1, survival
                sevent
clus2             0  1
  SDK1 MUTATED   16  1
  SDK1 WILD-TYPE 90 13
  SDK1 MUTATED SDK1 WILD-TYPE 
            17            103 
  SDK1 MUTATED SDK1 WILD-TYPE 
             1             13 
$`SDK1 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3811 TCGA-AA-3842 
       16.54        17.19         1.02         1.02         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         1.02         0.99         1.02         4.01 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AA-A02W TCGA-AG-A002 
        1.02        35.01         0.92        40.96        20.94 

$`SDK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 
        9.14         8.09         0.99         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 
        0.99         1.02         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02Y TCGA-AA-A03F 
       51.95        39.95         2.01         5.03        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SDK1 MUTATED SDK1 WILD-TYPE 
          0.92           0.92 
  SDK1 MUTATED SDK1 WILD-TYPE 
         40.96          72.07 
  SDK1 MUTATED SDK1 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 41.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
[1] "hr=" "1.4"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     25    2
  SDK1 WILD-TYPE  129   66
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  COLON            25            129
  RECTUM            2             66
D79V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     14   13
  SDK1 WILD-TYPE   93  104
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE           14             93
  MALE             13            104
D79V5, multiclass
                                clus
vv                               SDK1 MUTATED SDK1 WILD-TYPE
  COLON ADENOCARCINOMA                     17            111
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D79V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            1              8
  T2            5             42
  T3           19            131
  T4            2             15
D79V7, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  N0           16            118
  N1            3             41
  N2            8             38
D79V8, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  M0            22            167
  M1             4             27
  M1A            0              1
D79V9, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  I              4             44
  II            11             71
  III            7             53
  IV             3             26

Clustering(80) Variable = EVC2 MUTATION ANALYSIS
D80V1, survival
                sevent
clus2             0  1
  EVC2 MUTATED    8  2
  EVC2 WILD-TYPE 98 12
  EVC2 MUTATED EVC2 WILD-TYPE 
            10            110 
  EVC2 MUTATED EVC2 WILD-TYPE 
             2             12 
$`EVC2 MUTATED`
TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3977 TCGA-AA-A00A 
       15.52         0.99         0.99         0.92         1.02        18.02 
TCGA-AA-A00N TCGA-AA-A01Q TCGA-AA-A024 TCGA-AG-A002 
        4.01         1.02        39.06        20.94 

$`EVC2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         0.99        13.94        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
       13.02        12.00        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 
        1.02        33.04        35.01        26.01        20.98        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  EVC2 MUTATED EVC2 WILD-TYPE 
          0.92           0.92 
  EVC2 MUTATED EVC2 WILD-TYPE 
         39.06          72.07 
  EVC2 MUTATED EVC2 WILD-TYPE 
         2.515         11.490 
[1] "0.9 - 39.1 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
[1] "hr=" "2.1"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     13    4
  EVC2 WILD-TYPE  141   64
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  COLON            13            141
  RECTUM            4             64
D80V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      8    9
  EVC2 WILD-TYPE   99  108
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  FEMALE            8             99
  MALE              9            108
D80V5, multiclass
                                clus
vv                               EVC2 MUTATED EVC2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D80V6, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           13            137
  T4            2             15
D80V7, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  N0           12            122
  N1            2             42
  N2            3             43
D80V8, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  M0            15            174
  M1             1             30
  M1A            0              1
D80V9, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  I              1             47
  II             9             73
  III            5             55
  IV             1             28

Clustering(81) Variable = CDH8 MUTATION ANALYSIS
D81V1, survival
                sevent
clus2              0   1
  CDH8 MUTATED     6   1
  CDH8 WILD-TYPE 100  13
  CDH8 MUTATED CDH8 WILD-TYPE 
             7            113 
  CDH8 MUTATED CDH8 WILD-TYPE 
             1             13 
$`CDH8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01Q TCGA-AF-2689 TCGA-AG-A002 
        1.02         4.01         0.99         1.02        15.85        20.94 
TCGA-AG-A016 
        1.02 

$`CDH8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31         0.95        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  CDH8 MUTATED CDH8 WILD-TYPE 
          0.99           0.92 
  CDH8 MUTATED CDH8 WILD-TYPE 
         20.94          72.07 
  CDH8 MUTATED CDH8 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
[1] "hr=" "2.1"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED     10    4
  CDH8 WILD-TYPE  144   64
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  COLON            10            144
  RECTUM            4             64
D81V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      7    7
  CDH8 WILD-TYPE  100  110
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  FEMALE            7            100
  MALE              7            110
D81V5, multiclass
                                clus
vv                               CDH8 MUTATED CDH8 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D81V6, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  T1            0              9
  T2            4             43
  T3            9            141
  T4            1             16
D81V7, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            3             43
D81V8, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  M0            10            179
  M1             3             28
  M1A            0              1
D81V9, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  I              3             45
  II             5             77
  III            2             58
  IV             2             27

Clustering(82) Variable = OR2M4 MUTATION ANALYSIS
D82V1, survival
                 sevent
clus2               0   1
  OR2M4 MUTATED     5   0
  OR2M4 WILD-TYPE 101  14
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              5             115 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              0              14 
$`OR2M4 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3986 TCGA-AA-A010 TCGA-AA-A02O 
        0.99         0.99         0.99        20.98         0.92 

$`OR2M4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.92            0.92 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.98           72.07 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.99           12.00 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
[1] "hr="     "9200000"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  146   68
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON              8             146
  RECTUM             0              68
D82V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      5    3
  OR2M4 WILD-TYPE  102  114
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             5             102
  MALE               3             114
D82V5, multiclass
                                clus
vv                               OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D82V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             1              16
D82V7, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
D82V8, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D82V9, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               1              47
  II              4              78
  III             2              58
  IV              1              28

Clustering(83) Variable = NXF5 MUTATION ANALYSIS
D83V1, survival
                sevent
clus2              0   1
  NXF5 MUTATED     4   0
  NXF5 WILD-TYPE 102  14
  NXF5 MUTATED NXF5 WILD-TYPE 
             4            116 
  NXF5 MUTATED NXF5 WILD-TYPE 
             0             14 
$`NXF5 MUTATED`
TCGA-AA-A010 TCGA-AG-A00Y TCGA-AG-A025 TCGA-AG-A02N 
       20.98        23.01        49.94        61.94 

$`NXF5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NXF5 MUTATED NXF5 WILD-TYPE 
         20.98           0.92 
  NXF5 MUTATED NXF5 WILD-TYPE 
         61.94          72.07 
  NXF5 MUTATED NXF5 WILD-TYPE 
        36.475         10.505 
[1] "21.0 - 61.9 (36.5)" "0.9 - 72.1 (10.5)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      4    3
  NXF5 WILD-TYPE  150   65
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D83V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      5    2
  NXF5 WILD-TYPE  102  115
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  FEMALE            5            102
  MALE              2            115
D83V5, multiclass
                                clus
vv                               NXF5 MUTATED NXF5 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D83V6, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            1             16
D83V7, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  N0            7            127
  N1            0             44
  N2            0             46
D83V8, multiclass
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D83V9, multiclass
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  I              2             46
  II             5             77
  III            0             60
  IV             0             29

Clustering(84) Variable = LRRIQ3 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2                0   1
  LRRIQ3 MUTATED     5   0
  LRRIQ3 WILD-TYPE 101  14
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               5              115 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               0               14 
$`LRRIQ3 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02        20.98         1.02        20.94 

$`LRRIQ3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.99             0.92 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           20.98            72.07 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      7    3
  LRRIQ3 WILD-TYPE  147   65
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D84V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      8    2
  LRRIQ3 WILD-TYPE   99  115
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              8               99
  MALE                2              115
D84V5, multiclass
                                clus
vv                               LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D84V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              2               15
D84V7, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              2               44
D84V8, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D84V9, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                3               45
  II               3               79
  III              3               57
  IV               1               28

Clustering(85) Variable = CDH11 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  CDH11 MUTATED    9  2
  CDH11 WILD-TYPE 97 12
  CDH11 MUTATED CDH11 WILD-TYPE 
             11             109 
  CDH11 MUTATED CDH11 WILD-TYPE 
              2              12 
$`CDH11 MUTATED`
TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A00U TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02Y TCGA-AG-A002 
       17.00        38.07         1.02        39.95        20.94 

$`CDH11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
        0.99        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        40.96        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CDH11 MUTATED CDH11 WILD-TYPE 
           0.99            0.92 
  CDH11 MUTATED CDH11 WILD-TYPE 
          39.95           72.07 
  CDH11 MUTATED CDH11 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
[1] "hr=" "1.8"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     13    1
  CDH11 WILD-TYPE  141   67
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  COLON             13             141
  RECTUM             1              67
D85V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      5    9
  CDH11 WILD-TYPE  102  108
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D85V5, multiclass
                                clus
vv                               CDH11 MUTATED CDH11 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D85V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             1              16
D85V7, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  N0             7             127
  N1             4              40
  N2             3              43
D85V8, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D85V9, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  I               2              46
  II              4              78
  III             5              55
  IV              2              27

Clustering(86) Variable = LPPR4 MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    7  0
  LPPR4 WILD-TYPE 99 14
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              7             113 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              0              14 
$`LPPR4 MUTATED`
TCGA-AA-3710 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01Q TCGA-AG-3599 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-3892 
        1.02 

$`LPPR4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           0.99            0.92 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           72.07 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr="     "9800000"
D86V2, continuous
D86V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     11    2
  LPPR4 WILD-TYPE  143   66
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D86V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      7    6
  LPPR4 WILD-TYPE  100  111
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D86V5, multiclass
                                clus
vv                               LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D86V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             7             143
  T4             1              16
D86V7, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  N0             8             126
  N1             5              39
  N2             0              46
D86V8, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D86V9, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  I               3              45
  II              4              78
  III             4              56
  IV              1              28

Clustering(87) Variable = RIMS1 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2              0  1
  RIMS1 MUTATED    8  1
  RIMS1 WILD-TYPE 98 13
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              9             111 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              1              13 
$`RIMS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01R 
        0.99         1.02         1.02        20.98        38.07        35.01 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A02N 
        1.02        20.94        61.94 

$`RIMS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       13.02         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  RIMS1 MUTATED RIMS1 WILD-TYPE 
           0.99            0.92 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
          61.94           72.07 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
          20.94           10.92 
[1] "1.0 - 61.9 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
[1] "hr=" "1.3"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED     12    3
  RIMS1 WILD-TYPE  142   65
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D87V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED      6    9
  RIMS1 WILD-TYPE  101  108
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  FEMALE             6             101
  MALE               9             108
D87V5, multiclass
                                clus
vv                               RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D87V6, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             2              15
D87V7, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  N0            13             121
  N1             1              43
  N2             1              45
D87V8, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  M0             14             175
  M1              0              31
  M1A             0               1
D87V9, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  I               3              45
  II              9              73
  III             2              58
  IV              0              29

Clustering(88) Variable = SPATA17 MUTATION ANALYSIS
D88V1, survival
                   sevent
clus2                 0   1
  SPATA17 MUTATED     4   1
  SPATA17 WILD-TYPE 102  13
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                5               115 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                1                13 
$`SPATA17 MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-A00J TCGA-AA-A00N TCGA-AG-A002 
       14.70         0.99        18.02         4.01        20.94 

$`SPATA17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SPATA17 MUTATED SPATA17 WILD-TYPE 
             0.99              0.92 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            20.94             72.07 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            14.70             10.92 
[1] "1.0 - 20.9 (14.7)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
[1] "hr=" "1.9"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      7    2
  SPATA17 WILD-TYPE  147   66
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON                7               147
  RECTUM               2                66
D88V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      5    4
  SPATA17 WILD-TYPE  102  113
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D88V5, multiclass
                                clus
vv                               SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D88V6, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               2               148
  T4               3                14
D88V7, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  N0               8               126
  N1               1                43
  N2               0                46
D88V8, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D88V9, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  I                 3                45
  II                5                77
  III               1                59
  IV                0                29

Clustering(89) Variable = GRIA1 MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  GRIA1 MUTATED   12  1
  GRIA1 WILD-TYPE 94 13
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             13             107 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
              1              13 
$`GRIA1 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3844 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         1.02         0.92         1.02         1.02        30.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02Y 
        0.99        20.98        13.02        39.95         2.01        39.95 
TCGA-AG-A02N 
       61.94 

$`GRIA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  GRIA1 MUTATED GRIA1 WILD-TYPE 
           0.92            0.92 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          61.94           72.07 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          13.02           10.92 
[1] "0.9 - 61.9 (13.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
[1] "hr=" "2.1"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     14    1
  GRIA1 WILD-TYPE  140   67
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON             14             140
  RECTUM             1              67
D89V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     10    5
  GRIA1 WILD-TYPE   97  112
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  FEMALE            10              97
  MALE               5             112
D89V5, multiclass
                                clus
vv                               GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D89V6, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
D89V7, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             3              43
D89V8, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             1               0
D89V9, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  I               3              45
  II              6              76
  III             2              58
  IV              3              26

Clustering(90) Variable = DPP10 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  DPP10 MUTATED    7  1
  DPP10 WILD-TYPE 99 13
  DPP10 MUTATED DPP10 WILD-TYPE 
              8             112 
  DPP10 MUTATED DPP10 WILD-TYPE 
              1              13 
$`DPP10 MUTATED`
TCGA-AA-3848 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3892 
        0.99         4.01        27.02        20.98        35.01         1.02 
TCGA-AG-A002 TCGA-AG-A01W 
       20.94        70.03 

$`DPP10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  DPP10 MUTATED DPP10 WILD-TYPE 
           0.99            0.92 
  DPP10 MUTATED DPP10 WILD-TYPE 
          70.03           72.07 
  DPP10 MUTATED DPP10 WILD-TYPE 
          20.96           10.77 
[1] "1.0 - 70.0 (21.0)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
[1] "hr=" "1.2"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      9    4
  DPP10 WILD-TYPE  145   64
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D90V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      7    6
  DPP10 WILD-TYPE  100  111
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D90V5, multiclass
                                clus
vv                               DPP10 MUTATED DPP10 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D90V6, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             7             143
  T4             2              15
D90V7, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             4              42
D90V8, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
D90V9, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  I               3              45
  II              5              77
  III             5              55
  IV              0              29

Clustering(91) Variable = SCN7A MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    9  1
  SCN7A WILD-TYPE 97 13
  SCN7A MUTATED SCN7A WILD-TYPE 
             10             110 
  SCN7A MUTATED SCN7A WILD-TYPE 
              1              13 
$`SCN7A MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
        8.09         0.99         0.99         1.02         1.02         4.01 
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
       20.98         1.02         1.02        20.94 

$`SCN7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.99            0.92 
  SCN7A MUTATED SCN7A WILD-TYPE 
          20.98           72.07 
  SCN7A MUTATED SCN7A WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.5"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     12    3
  SCN7A WILD-TYPE  142   65
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D91V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      8    7
  SCN7A WILD-TYPE   99  110
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             8              99
  MALE               7             110
D91V5, multiclass
                                clus
vv                               SCN7A MUTATED SCN7A WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D91V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             1               8
  T2             2              45
  T3             7             143
  T4             5              12
D91V7, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            12             122
  N1             0              44
  N2             3              43
D91V8, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D91V9, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  I               2              46
  II              9              73
  III             1              59
  IV              2              27

Clustering(92) Variable = CDH10 MUTATION ANALYSIS
D92V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED    7  1
  CDH10 WILD-TYPE 99 13
  CDH10 MUTATED CDH10 WILD-TYPE 
              8             112 
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              13 
$`CDH10 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         1.02         1.02         4.01        20.98        12.00 
TCGA-AA-A01Z TCGA-AG-A002 
       20.98        20.94 

$`CDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.99            0.92 
  CDH10 MUTATED CDH10 WILD-TYPE 
          20.98           72.07 
  CDH10 MUTATED CDH10 WILD-TYPE 
          8.005          10.950 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
[1] "hr=" "1.3"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     12    2
  CDH10 WILD-TYPE  142   66
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  COLON             12             142
  RECTUM             2              66
D92V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      5    9
  CDH10 WILD-TYPE  102  108
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D92V5, multiclass
                                clus
vv                               CDH10 MUTATED CDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D92V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
D92V7, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             1              45
D92V8, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D92V9, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I               3              45
  II              7              75
  III             2              58
  IV              1              28

Clustering(93) Variable = ODZ1 MUTATION ANALYSIS
D93V1, survival
                sevent
clus2             0  1
  ODZ1 MUTATED    9  4
  ODZ1 WILD-TYPE 97 10
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            13            107 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
             4             10 
$`ODZ1 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-A00Q TCGA-AA-A01P TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2689 TCGA-AG-A002 
       27.02        38.07        18.02         0.95        15.85        20.94 
TCGA-AG-A020 
       10.98 

$`ODZ1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3842 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00R 
       18.02        18.02        17.00         4.01        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       39.95        40.93        16.31        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        70.03        63.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ODZ1 MUTATED ODZ1 WILD-TYPE 
          0.95           0.92 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
         38.07          72.07 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
[1] "hr=" "5"  
D93V2, continuous
D93V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     16    5
  ODZ1 WILD-TYPE  138   63
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON            16            138
  RECTUM            5             63
D93V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     19    3
  ODZ1 WILD-TYPE   88  114
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  FEMALE           19             88
  MALE              3            114
D93V5, multiclass
                                clus
vv                               ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D93V6, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  T1            1              8
  T2            4             43
  T3           15            135
  T4            2             15
D93V7, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  N0           13            121
  N1            4             40
  N2            5             41
D93V8, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  M0            19            170
  M1             2             29
  M1A            0              1
D93V9, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  I              5             43
  II             8             74
  III            7             53
  IV             1             28

Clustering(94) Variable = SYNE1 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  SYNE1 MUTATED   26  2
  SYNE1 WILD-TYPE 80 12
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             28              92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
              2              12 
$`SYNE1 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3518 
       16.54        14.70        17.79        15.52         9.14         1.02 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3854 
        0.99         1.02         1.02         1.02         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        30.02         4.01        17.00        20.98 
TCGA-AA-A01Q TCGA-AA-A02W TCGA-AF-2691 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        1.02        40.96        10.62         1.02         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A036 
       13.02        49.94        61.94        72.07 

$`SYNE1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3526 
       13.91        17.19        14.37        10.92         8.09         0.99 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 
        6.02        25.94        23.01        17.03        15.91         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  SYNE1 MUTATED SYNE1 WILD-TYPE 
           0.99            0.92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          72.07           70.03 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
           9.88           11.49 
[1] "1.0 - 72.1 (9.9)"  "0.9 - 70.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
[1] "hr=" "2"  
D94V2, continuous
D94V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     37   10
  SYNE1 WILD-TYPE  117   58
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON             37             117
  RECTUM            10              58
D94V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     24   23
  SYNE1 WILD-TYPE   83   94
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            24              83
  MALE              23              94
D94V5, multiclass
                                clus
vv                               SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                      26             102
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D94V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             5               4
  T2             6              41
  T3            30             120
  T4             5              12
D94V7, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            32             102
  N1            10              34
  N2             5              41
D94V8, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  M0             42             147
  M1              3              28
  M1A             0               1
D94V9, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  I               9              39
  II             20              62
  III            13              47
  IV              3              26

Clustering(95) Variable = TNFRSF10C MUTATION ANALYSIS
D95V1, survival
                     sevent
clus2                   0   1
  TNFRSF10C MUTATED     1   0
  TNFRSF10C WILD-TYPE 105  14
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                 119 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  0                  14 
$`TNFRSF10C MUTATED`
TCGA-AA-3844 
        0.92 

$`TNFRSF10C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92                0.92 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               72.07 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               10.98 
[1] "0.9 - 0.9 (0.9)"   "0.9 - 72.1 (11.0)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
[1] "Remove cluster labels:" "TNFRSF10C MUTATED"     
clus
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                 119 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3846 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3848          TCGA-AA-3854          TCGA-AA-3877 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3939          TCGA-AA-3941          TCGA-AA-3947 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3949          TCGA-AA-3952          TCGA-AA-3966 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3977          TCGA-AA-3986 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01P          TCGA-AA-A01Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01R          TCGA-AA-A01S          TCGA-AA-A01T 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01V          TCGA-AA-A01X          TCGA-AA-A01Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02O 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AY-4070          TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3581 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3587 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3726          TCGA-AG-3727 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3887          TCGA-AG-3892 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3999 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4001          TCGA-AG-4007          TCGA-AG-4008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A01W          TCGA-AG-A01Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A025          TCGA-AG-A026 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02N          TCGA-AG-A02X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
D95V2, continuous
D95V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  148   68
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON                  6                 148
  RECTUM                 0                  68
D95V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      2    4
  TNFRSF10C WILD-TYPE  105  113
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  FEMALE                 2                 105
  MALE                   4                 113
D95V5, multiclass
                                clus
vv                               TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON ADENOCARCINOMA                           6                 122
  COLON MUCINOUS ADENOCARCINOMA                  0                  24
  RECTAL ADENOCARCINOMA                          0                  57
  RECTAL MUCINOUS ADENOCARCINOMA                 0                   8
D95V6, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  T1                 0                   9
  T2                 2                  45
  T3                 2                 148
  T4                 2                  15
D95V7, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  N0                 2                 132
  N1                 1                  43
  N2                 3                  43
D95V8, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  M0                  3                 186
  M1                  3                  28
  M1A                 0                   1
D95V9, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  I                   2                  46
  II                  0                  82
  III                 1                  59
  IV                  3                  26

Clustering(96) Variable = GUCY1A3 MUTATION ANALYSIS
D96V1, survival
                   sevent
clus2                0  1
  GUCY1A3 MUTATED    8  2
  GUCY1A3 WILD-TYPE 98 12
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               110 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                2                12 
$`GUCY1A3 MUTATED`
TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01R TCGA-AG-A002 TCGA-AG-A032 
        0.99        35.01        20.94        38.01 

$`GUCY1A3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             0.99              0.92 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            38.01             72.07 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 38.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
[1] "hr=" "2.6"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED     10    2
  GUCY1A3 WILD-TYPE  144   66
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON               10               144
  RECTUM               2                66
D96V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      5    7
  GUCY1A3 WILD-TYPE  102  110
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  FEMALE               5               102
  MALE                 7               110
D96V5, multiclass
                                clus
vv                               GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D96V6, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               7               143
  T4               3                14
D96V7, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               3                43
D96V8, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D96V9, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  I                 1                47
  II                5                77
  III               5                55
  IV                0                29

Clustering(97) Variable = DACH2 MUTATION ANALYSIS
D97V1, survival
                 sevent
clus2              0  1
  DACH2 MUTATED    7  0
  DACH2 WILD-TYPE 99 14
  DACH2 MUTATED DACH2 WILD-TYPE 
              7             113 
  DACH2 MUTATED DACH2 WILD-TYPE 
              0              14 
$`DACH2 MUTATED`
TCGA-AA-3518 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00R TCGA-AA-A010 TCGA-AG-A002 
        1.02         1.02        18.02         0.99        20.98        20.94 
TCGA-AG-A032 
       38.01 

$`DACH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
        1.94        38.93        61.94        40.96        72.07 

  DACH2 MUTATED DACH2 WILD-TYPE 
           0.99            0.92 
  DACH2 MUTATED DACH2 WILD-TYPE 
          38.01           72.07 
  DACH2 MUTATED DACH2 WILD-TYPE 
          18.02           10.92 
[1] "1.0 - 38.0 (18.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      8    4
  DACH2 WILD-TYPE  146   64
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D97V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      7    5
  DACH2 WILD-TYPE  100  112
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D97V5, multiclass
                                clus
vv                               DACH2 MUTATED DACH2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D97V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             3              14
D97V7, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             0              46
D97V8, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D97V9, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  I               3              45
  II              5              77
  III             2              58
  IV              1              28

Clustering(98) Variable = ATP10A MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2               0  1
  ATP10A MUTATED   12  1
  ATP10A WILD-TYPE 94 13
  ATP10A MUTATED ATP10A WILD-TYPE 
              13              107 
  ATP10A MUTATED ATP10A WILD-TYPE 
               1               13 
$`ATP10A MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-3986 TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N 
        1.02         0.99         0.99        18.02        18.02         4.01 
TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AG-3887 TCGA-AG-4001 TCGA-AG-A002 
       20.98         1.02        35.01         0.92         1.02        20.94 
TCGA-AG-A01W 
       70.03 

$`ATP10A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       19.00        30.02        34.03        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 
        1.02         0.99         1.02         0.95         0.99         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ATP10A MUTATED ATP10A WILD-TYPE 
            0.92             0.92 
  ATP10A MUTATED ATP10A WILD-TYPE 
           70.03            72.07 
  ATP10A MUTATED ATP10A WILD-TYPE 
            4.01            10.98 
[1] "0.9 - 70.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
[1] "hr=" "1.5"
D98V2, continuous
D98V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     13    6
  ATP10A WILD-TYPE  141   62
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  COLON              13              141
  RECTUM              6               62
D98V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     10    9
  ATP10A WILD-TYPE   97  108
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  FEMALE             10               97
  MALE                9              108
D98V5, multiclass
                                clus
vv                               ATP10A MUTATED ATP10A WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D98V6, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  T1              0                9
  T2              2               45
  T3             12              138
  T4              5               12
D98V7, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  N0             15              119
  N1              2               42
  N2              2               44
D98V8, multiclass
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  M0              18              171
  M1               1               30
  M1A              0                1
D98V9, multiclass
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  I                2               46
  II              13               69
  III              3               57
  IV               1               28

Clustering(99) Variable = UNC13C MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  UNC13C MUTATED    9  1
  UNC13C WILD-TYPE 97 13
  UNC13C MUTATED UNC13C WILD-TYPE 
              10              110 
  UNC13C MUTATED UNC13C WILD-TYPE 
               1               13 
$`UNC13C MUTATED`
TCGA-A6-3810 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        8.09         0.99         1.02         0.99         4.01        20.98 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A036 
        1.02        20.94        61.94        72.07 

$`UNC13C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  UNC13C MUTATED UNC13C WILD-TYPE 
            0.99             0.92 
  UNC13C MUTATED UNC13C WILD-TYPE 
           72.07            70.03 
  UNC13C MUTATED UNC13C WILD-TYPE 
            6.05            11.49 
[1] "1.0 - 72.1 (6.0)"  "0.9 - 70.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
[1] "hr=" "1.5"
D99V2, continuous
D99V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     12    5
  UNC13C WILD-TYPE  142   63
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  COLON              12              142
  RECTUM              5               63
D99V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     11    6
  UNC13C WILD-TYPE   96  111
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  FEMALE             11               96
  MALE                6              111
D99V5, multiclass
                                clus
vv                               UNC13C MUTATED UNC13C WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D99V6, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  T1              2                7
  T2              3               44
  T3              9              141
  T4              3               14
D99V7, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  N0             14              120
  N1              1               43
  N2              2               44
D99V8, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
D99V9, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  I                5               43
  II               9               73
  III              2               58
  IV               1               28

Clustering(100) Variable = ZCWPW2 MUTATION ANALYSIS
D100V1, survival
                  sevent
clus2                0   1
  ZCWPW2 MUTATED     6   0
  ZCWPW2 WILD-TYPE 100  14
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               6              114 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               0               14 
$`ZCWPW2 MUTATED`
TCGA-A6-2683 TCGA-AA-3966 TCGA-AA-A010 TCGA-AG-3587 TCGA-AG-4001 TCGA-AG-A002 
       15.52         1.02        20.98         1.02         1.02        20.94 

$`ZCWPW2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
            1.02             0.92 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
           20.98            72.07 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
            8.27            10.95 
[1] "1.0 - 21.0 (8.3)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    3
  ZCWPW2 WILD-TYPE  150   65
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D100V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    3
  ZCWPW2 WILD-TYPE  103  114
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D100V5, multiclass
                                clus
vv                               ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D100V6, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              2               15
D100V7, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D100V8, multiclass
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  M0               5              184
  M1               1               30
  M1A              0                1
D100V9, multiclass
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  I                2               46
  II               3               79
  III              0               60
  IV               1               28

Clustering(101) Variable = CNTN1 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  CNTN1 MUTATED    8  1
  CNTN1 WILD-TYPE 98 13
  CNTN1 MUTATED CNTN1 WILD-TYPE 
              9             111 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
              1              13 
$`CNTN1 MUTATED`
TCGA-A6-2672 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99        18.02         4.01        20.98 
TCGA-AG-3599 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02        20.94 

$`CNTN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CNTN1 MUTATED CNTN1 WILD-TYPE 
           0.99            0.92 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
          20.98           72.07 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
[1] "hr=" "1.3"
D101V2, continuous
D101V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED     10    4
  CNTN1 WILD-TYPE  144   64
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D101V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED      5    9
  CNTN1 WILD-TYPE  102  108
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
D101V5, multiclass
                                clus
vv                               CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D101V6, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             4              13
D101V7, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             3              43
D101V8, multiclass
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
D101V9, multiclass
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  I               5              43
  II              4              78
  III             3              57
  IV              2              27

Clustering(102) Variable = CDH18 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED    9  2
  CDH18 WILD-TYPE 97 12
  CDH18 MUTATED CDH18 WILD-TYPE 
             11             109 
  CDH18 MUTATED CDH18 WILD-TYPE 
              2              12 
$`CDH18 MUTATED`
TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00N 
       16.54        10.92         1.02         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02J TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A032 
       20.98         5.03        20.94        61.94        38.01 

$`CDH18 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A036 
       72.07 

  CDH18 MUTATED CDH18 WILD-TYPE 
           0.99            0.92 
  CDH18 MUTATED CDH18 WILD-TYPE 
          61.94           72.07 
  CDH18 MUTATED CDH18 WILD-TYPE 
          10.92           10.98 
[1] "1.0 - 61.9 (10.9)" "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
[1] "hr=" "1.5"
D102V2, continuous
D102V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     10    3
  CDH18 WILD-TYPE  144   65
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D102V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    5
  CDH18 WILD-TYPE   99  112
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
D102V5, multiclass
                                clus
vv                               CDH18 MUTATED CDH18 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D102V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             3              14
D102V7, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             1              45
D102V8, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D102V9, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I               2              46
  II              7              75
  III             3              57
  IV              1              28

Clustering(103) Variable = PCDHB5 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2                0   1
  PCDHB5 MUTATED     5   2
  PCDHB5 WILD-TYPE 101  12
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               7              113 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               2               12 
$`PCDHB5 MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3582 
        0.99         0.99        18.02         4.01        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`PCDHB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            0.99             0.92 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
           20.98            72.07 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
[1] "hr=" "3.5"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     12    2
  PCDHB5 WILD-TYPE  142   66
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON              12              142
  RECTUM              2               66
D103V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED      9    5
  PCDHB5 WILD-TYPE   98  112
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  FEMALE              9               98
  MALE                5              112
D103V5, multiclass
                                clus
vv                               PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D103V6, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              9              141
  T4              3               14
D103V7, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  N0             10              124
  N1              3               41
  N2              1               45
D103V8, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
D103V9, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  I                1               47
  II               9               73
  III              2               58
  IV               2               27

Clustering(104) Variable = C8B MUTATION ANALYSIS
D104V1, survival
               sevent
clus2            0  1
  C8B MUTATED    8  2
  C8B WILD-TYPE 98 12
  C8B MUTATED C8B WILD-TYPE 
           10           110 
  C8B MUTATED C8B WILD-TYPE 
            2            12 
$`C8B MUTATED`
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A01D 
       17.79        15.52         1.02         0.99         1.02         0.99 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A02J TCGA-AG-A002 
       33.04        35.01         5.03        20.94 

$`C8B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        17.19        14.70        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        35.01         1.02        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  C8B MUTATED C8B WILD-TYPE 
         0.99          0.92 
  C8B MUTATED C8B WILD-TYPE 
        35.01         72.07 
  C8B MUTATED C8B WILD-TYPE 
       10.275        10.950 
[1] "1.0 - 35.0 (10.3)" "0.9 - 72.1 (10.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
[1] "hr=" "2.3"
D104V2, continuous
D104V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      9    1
  C8B WILD-TYPE  145   67
        clus
vv       C8B MUTATED C8B WILD-TYPE
  COLON            9           145
  RECTUM           1            67
D104V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      7    3
  C8B WILD-TYPE  100  114
        clus
vv       C8B MUTATED C8B WILD-TYPE
  FEMALE           7           100
  MALE             3           114
D104V5, multiclass
                                clus
vv                               C8B MUTATED C8B WILD-TYPE
  COLON ADENOCARCINOMA                     6           122
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D104V6, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  T1           0             9
  T2           2            45
  T3           6           144
  T4           2            15
D104V7, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  N0           6           128
  N1           2            42
  N2           2            44
D104V8, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  M0            8           181
  M1            2            29
  M1A           0             1
D104V9, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  I             2            46
  II            2            80
  III           4            56
  IV            2            27

Clustering(105) Variable = CDH12 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  CDH12 MUTATED    9  0
  CDH12 WILD-TYPE 97 14
  CDH12 MUTATED CDH12 WILD-TYPE 
              9             111 
  CDH12 MUTATED CDH12 WILD-TYPE 
              0              14 
$`CDH12 MUTATED`
TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00R TCGA-AA-A010 
        0.99         1.02         1.02        19.00         0.99        20.98 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        1.02         0.99        20.94 

$`CDH12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CDH12 MUTATED CDH12 WILD-TYPE 
           0.99            0.92 
  CDH12 MUTATED CDH12 WILD-TYPE 
          20.98           72.07 
  CDH12 MUTATED CDH12 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D105V2, continuous
D105V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      8    5
  CDH12 WILD-TYPE  146   63
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  COLON              8             146
  RECTUM             5              63
D105V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      7    6
  CDH12 WILD-TYPE  100  111
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D105V5, multiclass
                                clus
vv                               CDH12 MUTATED CDH12 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D105V6, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             6             144
  T4             1              16
D105V7, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
D105V8, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D105V9, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  I               4              44
  II              7              75
  III             1              59
  IV              0              29

Clustering(106) Variable = COL12A1 MUTATION ANALYSIS
D106V1, survival
                   sevent
clus2                0  1
  COL12A1 MUTATED   12  2
  COL12A1 WILD-TYPE 94 12
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               14               106 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
                2                12 
$`COL12A1 MUTATED`
TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01I TCGA-AA-A02O TCGA-AA-A03F TCGA-AG-3726 TCGA-AG-3892 TCGA-AG-3999 
       12.00         0.92        18.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A00H 
       20.94        25.94 

$`COL12A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        1.02         0.99         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  COL12A1 MUTATED COL12A1 WILD-TYPE 
             0.92              0.92 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
            25.94             72.07 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
             1.02             12.00 
[1] "0.9 - 25.9 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
[1] "hr=" "2.1"
D106V2, continuous
D106V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     15    6
  COL12A1 WILD-TYPE  139   62
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON               15               139
  RECTUM               6                62
D106V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     10   11
  COL12A1 WILD-TYPE   97  106
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  FEMALE              10                97
  MALE                11               106
D106V5, multiclass
                                clus
vv                               COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                5                19
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D106V6, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              11               139
  T4               3                14
D106V7, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  N0              17               117
  N1               1                43
  N2               3                43
D106V8, multiclass
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  M0               20               169
  M1                0                31
  M1A               0                 1
D106V9, multiclass
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  I                 6                42
  II               10                72
  III               4                56
  IV                0                29

Clustering(107) Variable = ISL1 MUTATION ANALYSIS
D107V1, survival
                sevent
clus2              0   1
  ISL1 MUTATED     5   0
  ISL1 WILD-TYPE 101  14
  ISL1 MUTATED ISL1 WILD-TYPE 
             5            115 
  ISL1 MUTATED ISL1 WILD-TYPE 
             0             14 
$`ISL1 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-A010 
        0.99         0.99         1.02         0.99        20.98 

$`ISL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99           0.92 
  ISL1 MUTATED ISL1 WILD-TYPE 
         20.98          72.07 
  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99          12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
[1] "hr="     "9300000"
D107V2, continuous
D107V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  146   68
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D107V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      3    5
  ISL1 WILD-TYPE  104  112
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  FEMALE            3            104
  MALE              5            112
D107V5, multiclass
                                clus
vv                               ISL1 MUTATED ISL1 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D107V6, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            6            144
  T4            1             16
D107V7, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  N0            3            131
  N1            4             40
  N2            1             45
D107V8, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D107V9, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  I              0             48
  II             3             79
  III            4             56
  IV             1             28

Clustering(108) Variable = PCDHB2 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  PCDHB2 MUTATED   10  0
  PCDHB2 WILD-TYPE 96 14
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              10              110 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               0               14 
$`PCDHB2 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3977 
       16.54        17.19         0.99         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01Q TCGA-AG-A002 
       30.02        20.98         1.02        20.94 

$`PCDHB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            0.99             0.92 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           30.02            72.07 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            8.78            10.95 
[1] "1.0 - 30.0 (8.8)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D108V2, continuous
D108V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     13    1
  PCDHB2 WILD-TYPE  141   67
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D108V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      8    6
  PCDHB2 WILD-TYPE   99  111
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              8               99
  MALE                6              111
D108V5, multiclass
                                clus
vv                               PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D108V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              9              141
  T4              2               15
D108V7, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              2               44
D108V8, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              11              178
  M1               2               29
  M1A              0                1
D108V9, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  I                2               46
  II               5               77
  III              4               56
  IV               1               28

Clustering(109) Variable = TMTC1 MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   10  1
  TMTC1 WILD-TYPE 96 13
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             11             109 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              13 
$`TMTC1 MUTATED`
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00R 
        0.99         0.99         1.02         1.02        18.02         0.99 
TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 TCGA-AG-A011 
       35.01         1.02         1.02        20.94        17.03 

$`TMTC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       30.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
       27.02        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02        13.91         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.99            0.92 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          35.01           72.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
[1] "hr=" "1.2"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      9    4
  TMTC1 WILD-TYPE  145   64
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D109V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      6    7
  TMTC1 WILD-TYPE  101  110
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D109V5, multiclass
                                clus
vv                               TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D109V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
D109V7, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D109V8, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D109V9, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  I               3              45
  II              5              77
  III             4              56
  IV              0              29

Clustering(110) Variable = DCAF4L2 MUTATION ANALYSIS
D110V1, survival
                   sevent
clus2                 0   1
  DCAF4L2 MUTATED     6   1
  DCAF4L2 WILD-TYPE 100  13
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                7               113 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                1                13 
$`DCAF4L2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W TCGA-AG-3892 
        1.02         1.02         4.01        35.01        40.96         1.02 
TCGA-AG-A002 
       20.94 

$`DCAF4L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             1.02              0.92 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
            40.96             72.07 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             4.01             10.98 
[1] "1.0 - 41.0 (4.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
[1] "hr=" "1.1"
D110V2, continuous
D110V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      9    2
  DCAF4L2 WILD-TYPE  145   66
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D110V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      5    6
  DCAF4L2 WILD-TYPE  102  111
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  FEMALE               5               102
  MALE                 6               111
D110V5, multiclass
                                clus
vv                               DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D110V6, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  T1               1                 8
  T2               5                42
  T3               3               147
  T4               2                15
D110V7, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  N0               8               126
  N1               2                42
  N2               1                45
D110V8, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D110V9, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  I                 4                44
  II                3                79
  III               3                57
  IV                0                29

Clustering(111) Variable = CSMD3 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  CSMD3 MUTATED   17  1
  CSMD3 WILD-TYPE 89 13
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             18             102 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
              1              13 
$`CSMD3 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         0.99         0.99         1.02         1.02        30.02 
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01Z TCGA-AG-3892 
       18.02         4.01        20.98         1.02        20.98         1.02 
TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02N 
        1.02        20.94        17.03        12.00        70.03        61.94 

$`CSMD3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01Y TCGA-AG-A020 
       23.01        15.91        13.02         1.02        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CSMD3 MUTATED CSMD3 WILD-TYPE 
           0.99            0.92 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          70.03           72.07 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          13.35           10.77 
[1] "1.0 - 70.0 (13.3)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
[1] "hr=" "2.6"
D111V2, continuous
D111V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     19    9
  CSMD3 WILD-TYPE  135   59
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON             19             135
  RECTUM             9              59
D111V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     14   14
  CSMD3 WILD-TYPE   93  103
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            14              93
  MALE              14             103
D111V5, multiclass
                                clus
vv                               CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              8              16
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D111V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            17             133
  T4             6              11
D111V7, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  N0            21             113
  N1             4              40
  N2             3              43
D111V8, multiclass
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  M0             24             165
  M1              3              28
  M1A             0               1
D111V9, multiclass
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  I               3              45
  II             17              65
  III             4              56
  IV              3              26

Clustering(112) Variable = LRRN3 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  LRRN3 MUTATED    7  1
  LRRN3 WILD-TYPE 99 13
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              8             112 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              1              13 
$`LRRN3 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-A00E TCGA-AA-A00R TCGA-AA-A01P 
       10.92         0.99         1.02        30.02         0.99        38.07 
TCGA-AA-A01R TCGA-AG-A00C 
       35.01         6.02 

$`LRRN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02         1.02        20.94        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  LRRN3 MUTATED LRRN3 WILD-TYPE 
           0.99            0.92 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          38.07           72.07 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
           8.47           11.49 
[1] "1.0 - 38.1 (8.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
[1] "hr=" "1.2"
D112V2, continuous
D112V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      9    1
  LRRN3 WILD-TYPE  145   67
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D112V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      6    4
  LRRN3 WILD-TYPE  101  113
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D112V5, multiclass
                                clus
vv                               LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D112V6, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             7             143
  T4             2              15
D112V7, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  N0             3             131
  N1             4              40
  N2             3              43
D112V8, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             1               0
D112V9, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  I               1              47
  II              2              80
  III             5              55
  IV              2              27

Clustering(113) Variable = DKK4 MUTATION ANALYSIS
D113V1, survival
                sevent
clus2              0   1
  DKK4 MUTATED     5   1
  DKK4 WILD-TYPE 101  13
  DKK4 MUTATED DKK4 WILD-TYPE 
             6            114 
  DKK4 MUTATED DKK4 WILD-TYPE 
             1             13 
$`DKK4 MUTATED`
TCGA-AA-3715 TCGA-AA-3854 TCGA-AA-A00N TCGA-AG-3582 TCGA-AG-3727 TCGA-AG-A02N 
        0.99         1.02         4.01         1.02         0.95        61.94 

$`DKK4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  DKK4 MUTATED DKK4 WILD-TYPE 
          0.95           0.92 
  DKK4 MUTATED DKK4 WILD-TYPE 
         61.94          72.07 
  DKK4 MUTATED DKK4 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
[1] "hr=" "1.8"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      4    3
  DKK4 WILD-TYPE  150   65
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D113V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      3    4
  DKK4 WILD-TYPE  104  113
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D113V5, multiclass
                                clus
vv                               DKK4 MUTATED DKK4 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D113V6, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            1             16
D113V7, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            0             46
D113V8, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D113V9, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  I              1             47
  II             4             78
  III            1             59
  IV             1             28

Clustering(114) Variable = GRIN2A MUTATION ANALYSIS
D114V1, survival
                  sevent
clus2               0  1
  GRIN2A MUTATED    9  2
  GRIN2A WILD-TYPE 97 12
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              11              109 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
               2               12 
$`GRIN2A MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A010 
        0.99         1.02        30.02        17.00         4.01        20.98 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AG-3727 TCGA-AG-A002 
       38.07         1.02        35.01         0.95        20.94 

$`GRIN2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        18.02        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         1.02         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GRIN2A MUTATED GRIN2A WILD-TYPE 
            0.95             0.92 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           38.07            72.07 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           17.00            10.92 
[1] "0.9 - 38.1 (17.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
[1] "hr=" "1.8"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     15    4
  GRIN2A WILD-TYPE  139   64
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON              15              139
  RECTUM              4               64
D114V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED      7   12
  GRIN2A WILD-TYPE  100  105
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  FEMALE              7              100
  MALE               12              105
D114V5, multiclass
                                clus
vv                               GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D114V6, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  T1              0                9
  T2              3               44
  T3             13              137
  T4              3               14
D114V7, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  N0             11              123
  N1              7               37
  N2              1               45
D114V8, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  M0              16              173
  M1               2               29
  M1A              0                1
D114V9, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  I                2               46
  II               8               74
  III              6               54
  IV               2               27

Clustering(115) Variable = TPTE MUTATION ANALYSIS
D115V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    7  1
  TPTE WILD-TYPE 99 13
  TPTE MUTATED TPTE WILD-TYPE 
             8            112 
  TPTE MUTATED TPTE WILD-TYPE 
             1             13 
$`TPTE MUTATED`
TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.92         0.99         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AG-A002 
       35.01        20.94 

$`TPTE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TPTE MUTATED TPTE WILD-TYPE 
          0.92           0.92 
  TPTE MUTATED TPTE WILD-TYPE 
         35.01          72.07 
  TPTE MUTATED TPTE WILD-TYPE 
         2.515         11.490 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1.6"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     11    1
  TPTE WILD-TYPE  143   67
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  COLON            11            143
  RECTUM            1             67
D115V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    5
  TPTE WILD-TYPE  100  112
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D115V5, multiclass
                                clus
vv                               TPTE MUTATED TPTE WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D115V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              9
  T2            3             44
  T3            7            143
  T4            2             15
D115V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            7            127
  N1            1             43
  N2            4             42
D115V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
D115V9, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              2             46
  II             4             78
  III            4             56
  IV             1             28

Clustering(116) Variable = CNBD1 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2               0   1
  CNBD1 MUTATED     4   0
  CNBD1 WILD-TYPE 102  14
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              4             116 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              14 
$`CNBD1 MUTATED`
TCGA-AA-3710 TCGA-AA-3939 TCGA-AA-A010 TCGA-AG-A032 
        1.02         0.99        20.98        38.01 

$`CNBD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           0.99            0.92 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          38.01           72.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          11.00           10.95 
[1] "1.0 - 38.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D116V2, continuous
D116V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      6    1
  CNBD1 WILD-TYPE  148   67
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D116V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      4    3
  CNBD1 WILD-TYPE  103  114
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             4             103
  MALE               3             114
D116V5, multiclass
                                clus
vv                               CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D116V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             1              16
D116V7, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
D116V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D116V9, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               1              47
  II              5              77
  III             1              59
  IV              0              29

Clustering(117) Variable = POTEB MUTATION ANALYSIS
D117V1, survival
                 sevent
clus2               0   1
  POTEB MUTATED     4   0
  POTEB WILD-TYPE 102  14
  POTEB MUTATED POTEB WILD-TYPE 
              4             116 
  POTEB MUTATED POTEB WILD-TYPE 
              0              14 
$`POTEB MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AG-3887 TCGA-AG-A002 
        0.99         1.02         0.92        20.94 

$`POTEB WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  POTEB MUTATED POTEB WILD-TYPE 
           0.92            0.92 
  POTEB MUTATED POTEB WILD-TYPE 
          20.94           72.07 
  POTEB MUTATED POTEB WILD-TYPE 
          1.005          11.490 
[1] "0.9 - 20.9 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
[1] "hr="     "9200000"
D117V2, continuous
D117V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      5    3
  POTEB WILD-TYPE  149   65
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D117V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      4    4
  POTEB WILD-TYPE  103  113
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D117V5, multiclass
                                clus
vv                               POTEB MUTATED POTEB WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D117V6, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
D117V7, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D117V8, multiclass
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D117V9, multiclass
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  I               1              47
  II              5              77
  III             1              59
  IV              0              29

Clustering(118) Variable = RWDD2B MUTATION ANALYSIS
D118V1, survival
                  sevent
clus2                0   1
  RWDD2B MUTATED     6   1
  RWDD2B WILD-TYPE 100  13
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               7              113 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               1               13 
$`RWDD2B MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-3892 
        0.99         1.02        18.02        20.98         1.02         1.02 
TCGA-AG-A02G 
       38.93 

$`RWDD2B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        61.94        40.96        38.01        72.07 

  RWDD2B MUTATED RWDD2B WILD-TYPE 
            0.99             0.92 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
           38.93            72.07 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 38.9 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
[1] "hr=" "1.3"
D118V2, continuous
D118V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      5    3
  RWDD2B WILD-TYPE  149   65
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D118V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      4    4
  RWDD2B WILD-TYPE  103  113
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D118V5, multiclass
                                clus
vv                               RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D118V6, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  T1              1                8
  T2              3               44
  T3              3              147
  T4              1               16
D118V7, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  N0              7              127
  N1              1               43
  N2              0               46
D118V8, multiclass
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D118V9, multiclass
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  I                2               46
  II               4               78
  III              0               60
  IV               1               28

Clustering(119) Variable = B2M MUTATION ANALYSIS
D119V1, survival
               sevent
clus2             0   1
  B2M MUTATED     4   0
  B2M WILD-TYPE 102  14
  B2M MUTATED B2M WILD-TYPE 
            4           116 
  B2M MUTATED B2M WILD-TYPE 
            0            14 
$`B2M MUTATED`
TCGA-A6-2672 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A02N 
       16.54        20.98         1.02        61.94 

$`B2M WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  B2M MUTATED B2M WILD-TYPE 
         1.02          0.92 
  B2M MUTATED B2M WILD-TYPE 
        61.94         72.07 
  B2M MUTATED B2M WILD-TYPE 
        18.76         10.77 
[1] "1.0 - 61.9 (18.8)" "0.9 - 72.1 (10.8)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
[1] "hr="     "2.7e+07"
D119V2, continuous
D119V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      3    2
  B2M WILD-TYPE  151   66
        clus
vv       B2M MUTATED B2M WILD-TYPE
  COLON            3           151
  RECTUM           2            66
D119V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      4    1
  B2M WILD-TYPE  103  116
        clus
vv       B2M MUTATED B2M WILD-TYPE
  FEMALE           4           103
  MALE             1           116
D119V5, multiclass
                                clus
vv                               B2M MUTATED B2M WILD-TYPE
  COLON ADENOCARCINOMA                     2           126
  COLON MUCINOUS ADENOCARCINOMA            0            24
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D119V6, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  T1           1             8
  T2           0            47
  T3           3           147
  T4           1            16
D119V7, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  N0           4           130
  N1           1            43
  N2           0            46
D119V8, multiclass
     clus
vv    B2M MUTATED B2M WILD-TYPE
  M0            5           184
  M1            0            31
  M1A           0             1
D119V9, multiclass
     clus
vv    B2M MUTATED B2M WILD-TYPE
  I             1            47
  II            3            79
  III           1            59
  IV            0            29

Clustering(120) Variable = DOCK2 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  DOCK2 MUTATED   12  1
  DOCK2 WILD-TYPE 94 13
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             13             107 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              1              13 
$`DOCK2 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        19.00        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A020 
        4.01        20.98        35.01         1.02        20.94        10.98 
TCGA-AG-A02N 
       61.94 

$`DOCK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        18.02        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  DOCK2 MUTATED DOCK2 WILD-TYPE 
           0.99            0.92 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          61.94           72.07 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          10.98           10.92 
[1] "1.0 - 61.9 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr=" "1.7"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     16    5
  DOCK2 WILD-TYPE  138   63
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON             16             138
  RECTUM             5              63
D120V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     10   11
  DOCK2 WILD-TYPE   97  106
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE            10              97
  MALE              11             106
D120V5, multiclass
                                clus
vv                               DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D120V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            12             138
  T4             4              13
D120V7, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             3              43
D120V8, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  M0             20             169
  M1              0              31
  M1A             0               1
D120V9, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  I               4              44
  II             11              71
  III             5              55
  IV              0              29

Clustering(121) Variable = FLRT2 MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2               0   1
  FLRT2 MUTATED     5   1
  FLRT2 WILD-TYPE 101  13
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              6             114 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              1              13 
$`FLRT2 MUTATED`
TCGA-A6-2676 TCGA-AA-A00N TCGA-AA-A00Z TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       14.70         4.01        21.99        20.98         1.02        20.94 

$`FLRT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  FLRT2 MUTATED FLRT2 WILD-TYPE 
           1.02            0.92 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          21.99           72.07 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          17.82           10.77 
[1] "1.0 - 22.0 (17.8)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr=" "1.4"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED     11    2
  FLRT2 WILD-TYPE  143   66
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D121V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      8    5
  FLRT2 WILD-TYPE   99  112
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
D121V5, multiclass
                                clus
vv                               FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D121V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             2               7
  T2             1              46
  T3             7             143
  T4             2              15
D121V7, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D121V8, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
D121V9, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  I               3              45
  II              7              75
  III             3              57
  IV              0              29

Clustering(122) Variable = FAM22F MUTATION ANALYSIS
D122V1, survival
                  sevent
clus2                0   1
  FAM22F MUTATED     3   1
  FAM22F WILD-TYPE 103  13
  FAM22F MUTATED FAM22F WILD-TYPE 
               4              116 
  FAM22F MUTATED FAM22F WILD-TYPE 
               1               13 
$`FAM22F MUTATED`
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N TCGA-AG-A002 
        0.99         1.02         4.01        20.94 

$`FAM22F WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAM22F MUTATED FAM22F WILD-TYPE 
            0.99             0.92 
  FAM22F MUTATED FAM22F WILD-TYPE 
           20.94            72.07 
  FAM22F MUTATED FAM22F WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 20.9 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
[1] "hr=" "3.5"
D122V2, continuous
D122V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      8    1
  FAM22F WILD-TYPE  146   67
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D122V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      0    9
  FAM22F WILD-TYPE  107  108
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  FEMALE              0              107
  MALE                9              108
D122V5, multiclass
                                clus
vv                               FAM22F MUTATED FAM22F WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D122V6, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  T1              0                9
  T2              4               43
  T3              2              148
  T4              3               14
D122V7, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  N0              5              129
  N1              2               42
  N2              2               44
D122V8, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  M0               5              184
  M1               3               28
  M1A              0                1
D122V9, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  I                3               45
  II               1               81
  III              1               59
  IV               3               26

Clustering(123) Variable = GABRG1 MUTATION ANALYSIS
D123V1, survival
                  sevent
clus2                0   1
  GABRG1 MUTATED     5   0
  GABRG1 WILD-TYPE 101  14
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               5              115 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               0               14 
$`GABRG1 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-A00C 
       10.92         0.99         0.99        20.98         6.02 

$`GABRG1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GABRG1 MUTATED GABRG1 WILD-TYPE 
            0.99             0.92 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
           20.98            72.07 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
            6.02            12.00 
[1] "1.0 - 21.0 (6.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      6    2
  GABRG1 WILD-TYPE  148   66
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D123V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      7    1
  GABRG1 WILD-TYPE  100  116
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  FEMALE              7              100
  MALE                1              116
D123V5, multiclass
                                clus
vv                               GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D123V6, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              2               15
D123V7, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              2               44
D123V8, multiclass
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D123V9, multiclass
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  I                1               47
  II               4               78
  III              3               57
  IV               0               29

Clustering(124) Variable = CHST9 MUTATION ANALYSIS
D124V1, survival
                 sevent
clus2               0   1
  CHST9 MUTATED     4   2
  CHST9 WILD-TYPE 102  12
  CHST9 MUTATED CHST9 WILD-TYPE 
              6             114 
  CHST9 MUTATED CHST9 WILD-TYPE 
              2              12 
$`CHST9 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A024 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02         4.01        39.06         1.02        20.94 

$`CHST9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        26.01        20.98        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CHST9 MUTATED CHST9 WILD-TYPE 
           0.99            0.92 
  CHST9 MUTATED CHST9 WILD-TYPE 
          39.06           72.07 
  CHST9 MUTATED CHST9 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 39.1 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
[1] "hr=" "3"  
D124V2, continuous
D124V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      5    3
  CHST9 WILD-TYPE  149   65
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D124V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      3    5
  CHST9 WILD-TYPE  104  112
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
D124V5, multiclass
                                clus
vv                               CHST9 MUTATED CHST9 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D124V6, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             4             146
  T4             1              16
D124V7, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             1              45
D124V8, multiclass
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D124V9, multiclass
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  I               2              46
  II              3              79
  III             1              59
  IV              1              28

Clustering(125) Variable = PCDH10 MUTATION ANALYSIS
D125V1, survival
                  sevent
clus2               0  1
  PCDH10 MUTATED   14  0
  PCDH10 WILD-TYPE 92 14
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              106 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
               0               14 
$`PCDH10 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3949 
       16.54        14.70         1.02         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01K TCGA-AA-A01V TCGA-AG-3892 
       18.02        20.98        15.02        13.02        35.01         1.02 
TCGA-AG-A002 TCGA-AG-A01L 
       20.94        12.00 

$`PCDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  PCDH10 MUTATED PCDH10 WILD-TYPE 
            0.99             0.92 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           35.01            72.07 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
          13.860           10.505 
[1] "1.0 - 35.0 (13.9)" "0.9 - 72.1 (10.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     14    3
  PCDH10 WILD-TYPE  140   65
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON              14              140
  RECTUM              3               65
D125V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     11    6
  PCDH10 WILD-TYPE   96  111
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  FEMALE             11               96
  MALE                6              111
D125V5, multiclass
                                clus
vv                               PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D125V6, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  T1              1                8
  T2              2               45
  T3             11              139
  T4              2               15
D125V7, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  N0              9              125
  N1              5               39
  N2              3               43
D125V8, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
D125V9, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  I                3               45
  II               6               76
  III              7               53
  IV               1               28

Clustering(126) Variable = SFMBT2 MUTATION ANALYSIS
D126V1, survival
                  sevent
clus2               0  1
  SFMBT2 MUTATED    8  0
  SFMBT2 WILD-TYPE 98 14
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               8              112 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               0               14 
$`SFMBT2 MUTATED`
TCGA-A6-2676 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         1.02        20.98 
TCGA-AA-A01R TCGA-AG-A01L 
       35.01        12.00 

$`SFMBT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            0.99             0.92 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
           35.01            72.07 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            6.51            10.95 
[1] "1.0 - 35.0 (6.5)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D126V2, continuous
D126V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     12    1
  SFMBT2 WILD-TYPE  142   67
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON              12              142
  RECTUM              1               67
D126V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      5    8
  SFMBT2 WILD-TYPE  102  109
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  FEMALE              5              102
  MALE                8              109
D126V5, multiclass
                                clus
vv                               SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D126V6, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              6              144
  T4              2               15
D126V7, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  N0              7              127
  N1              4               40
  N2              2               44
D126V8, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  M0              10              179
  M1               2               29
  M1A              0                1
D126V9, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  I                2               46
  II               4               78
  III              4               56
  IV               2               27

Clustering(127) Variable = EPHA5 MUTATION ANALYSIS
D127V1, survival
                 sevent
clus2               0   1
  EPHA5 MUTATED     6   1
  EPHA5 WILD-TYPE 100  13
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              7             113 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              1              13 
$`EPHA5 MUTATED`
TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00Z TCGA-AA-A010 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02        21.99        20.98        20.94        13.91 
TCGA-AG-A02X 
       40.96 

$`EPHA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        38.01        72.07 

  EPHA5 MUTATED EPHA5 WILD-TYPE 
           1.02            0.92 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
          40.96           72.07 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
          20.94           10.62 
[1] "1.0 - 41.0 (20.9)" "0.9 - 72.1 (10.6)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
[1] "hr=" "1.1"
D127V2, continuous
D127V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      9    4
  EPHA5 WILD-TYPE  145   64
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D127V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      6    7
  EPHA5 WILD-TYPE  101  110
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D127V5, multiclass
                                clus
vv                               EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D127V6, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             1              16
D127V7, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D127V8, multiclass
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D127V9, multiclass
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  I               3              45
  II              5              77
  III             4              56
  IV              0              29

Clustering(128) Variable = FAM135B MUTATION ANALYSIS
D128V1, survival
                   sevent
clus2                0  1
  FAM135B MUTATED    7  1
  FAM135B WILD-TYPE 99 13
  FAM135B MUTATED FAM135B WILD-TYPE 
                8               112 
  FAM135B MUTATED FAM135B WILD-TYPE 
                1                13 
$`FAM135B MUTATED`
TCGA-A6-3810 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A02Y 
        8.09         0.99         1.02        38.07        35.01        39.95 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`FAM135B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FAM135B MUTATED FAM135B WILD-TYPE 
             0.99              0.92 
  FAM135B MUTATED FAM135B WILD-TYPE 
            39.95             72.07 
  FAM135B MUTATED FAM135B WILD-TYPE 
           14.515            10.950 
[1] "1.0 - 40.0 (14.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
[1] "hr=" "1.2"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED     12    3
  FAM135B WILD-TYPE  142   65
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  COLON               12               142
  RECTUM               3                65
D128V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED      7    8
  FAM135B WILD-TYPE  100  109
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  FEMALE               7               100
  MALE                 8               109
D128V5, multiclass
                                clus
vv                               FAM135B MUTATED FAM135B WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D128V6, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  T1               1                 8
  T2               4                43
  T3              10               140
  T4               0                17
D128V7, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  N0               8               126
  N1               4                40
  N2               3                43
D128V8, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  M0               12               177
  M1                2                29
  M1A               0                 1
D128V9, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  I                 4                44
  II                3                79
  III               5                55
  IV                2                27

Clustering(129) Variable = GML MUTATION ANALYSIS
D129V1, survival
               sevent
clus2             0   1
  GML MUTATED     4   1
  GML WILD-TYPE 102  13
  GML MUTATED GML WILD-TYPE 
            5           115 
  GML MUTATED GML WILD-TYPE 
            1            13 
$`GML MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AG-A002 
        1.02         0.99         0.99         1.02        20.94 

$`GML WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GML MUTATED GML WILD-TYPE 
         0.99          0.92 
  GML MUTATED GML WILD-TYPE 
        20.94         72.07 
  GML MUTATED GML WILD-TYPE 
         1.02         12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "hr=" "4"  
D129V2, continuous
D129V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      5    1
  GML WILD-TYPE  149   67
        clus
vv       GML MUTATED GML WILD-TYPE
  COLON            5           149
  RECTUM           1            67
D129V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      1    5
  GML WILD-TYPE  106  112
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1           106
  MALE             5           112
D129V5, multiclass
                                clus
vv                               GML MUTATED GML WILD-TYPE
  COLON ADENOCARCINOMA                     4           124
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D129V6, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  T1           0             9
  T2           2            45
  T3           4           146
  T4           0            17
D129V7, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  N0           3           131
  N1           2            42
  N2           1            45
D129V8, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  M0            4           185
  M1            1            30
  M1A           0             1
D129V9, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  I             1            47
  II            1            81
  III           2            58
  IV            1            28

Clustering(130) Variable = PSG8 MUTATION ANALYSIS
D130V1, survival
                sevent
clus2              0   1
  PSG8 MUTATED     2   1
  PSG8 WILD-TYPE 104  13
  PSG8 MUTATED PSG8 WILD-TYPE 
             3            117 
  PSG8 MUTATED PSG8 WILD-TYPE 
             1             13 
$`PSG8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01X 
        1.02         4.01        26.01 

$`PSG8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  PSG8 MUTATED PSG8 WILD-TYPE 
          1.02           0.92 
  PSG8 MUTATED PSG8 WILD-TYPE 
         26.01          72.07 
  PSG8 MUTATED PSG8 WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 26.0 (4.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
[1] "hr=" "3.7"
D130V2, continuous
D130V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      8    0
  PSG8 WILD-TYPE  146   68
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D130V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      4    4
  PSG8 WILD-TYPE  103  113
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  FEMALE            4            103
  MALE              4            113
D130V5, multiclass
                                clus
vv                               PSG8 MUTATED PSG8 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D130V6, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            2             15
D130V7, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            1             45
D130V8, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D130V9, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  I              0             48
  II             4             78
  III            2             58
  IV             1             28

Clustering(131) Variable = ACVR2A MUTATION ANALYSIS
D131V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    7  0
  ACVR2A WILD-TYPE 99 14
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               7              113 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               0               14 
$`ACVR2A MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A01V TCGA-AA-A02F 
       16.54         1.02         1.02        20.98        35.01        39.95 
TCGA-AG-A002 
       20.94 

$`ACVR2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        39.06        51.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             0.92 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           39.95            72.07 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           20.94            10.62 
[1] "1.0 - 40.0 (20.9)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
[1] "hr="     "7.5e+07"
D131V2, continuous
D131V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    1
  ACVR2A WILD-TYPE  146   67
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D131V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    2
  ACVR2A WILD-TYPE  100  115
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D131V5, multiclass
                                clus
vv                               ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D131V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              0                9
  T2              2               45
  T3              6              144
  T4              1               16
D131V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              7              127
  N1              2               42
  N2              0               46
D131V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D131V9, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                2               46
  II               5               77
  III              1               59
  IV               1               28

Clustering(132) Variable = IFT80 MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2              0  1
  IFT80 MUTATED    8  1
  IFT80 WILD-TYPE 98 13
  IFT80 MUTATED IFT80 WILD-TYPE 
              9             111 
  IFT80 MUTATED IFT80 WILD-TYPE 
              1              13 
$`IFT80 MUTATED`
TCGA-A6-2670 TCGA-AA-3966 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02O TCGA-AA-A02Y 
       13.91         1.02        38.07         1.02         0.92        39.95 
TCGA-AG-3892 TCGA-AG-4001 TCGA-AG-A002 
        1.02         1.02        20.94 

$`IFT80 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        2.01         5.03        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  IFT80 MUTATED IFT80 WILD-TYPE 
           0.92            0.92 
  IFT80 MUTATED IFT80 WILD-TYPE 
          39.95           72.07 
  IFT80 MUTATED IFT80 WILD-TYPE 
           1.02           10.98 
[1] "0.9 - 40.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
[1] "hr=" "1.1"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      7    3
  IFT80 WILD-TYPE  147   65
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  COLON              7             147
  RECTUM             3              65
D132V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      5    5
  IFT80 WILD-TYPE  102  112
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D132V5, multiclass
                                clus
vv                               IFT80 MUTATED IFT80 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D132V6, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             0              17
D132V7, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             0              46
D132V8, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D132V9, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  I               4              44
  II              5              77
  III             1              59
  IV              0              29

Clustering(133) Variable = SOHLH2 MUTATION ANALYSIS
D133V1, survival
                  sevent
clus2                0   1
  SOHLH2 MUTATED     3   2
  SOHLH2 WILD-TYPE 103  12
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               5              115 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               2               12 
$`SOHLH2 MUTATED`
TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A02N 
        1.02         1.02         4.01        20.98        61.94 

$`SOHLH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
            1.02             0.92 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
           61.94            72.07 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 61.9 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
[1] "hr=" "3.1"
D133V2, continuous
D133V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      8    1
  SOHLH2 WILD-TYPE  146   67
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D133V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      4    5
  SOHLH2 WILD-TYPE  103  112
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D133V5, multiclass
                                clus
vv                               SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D133V6, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              3               14
D133V7, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              1               45
D133V8, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  M0               7              182
  M1               1               30
  M1A              0                1
D133V9, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  I                1               47
  II               3               79
  III              3               57
  IV               1               28

Clustering(134) Variable = JAKMIP2 MUTATION ANALYSIS
D134V1, survival
                   sevent
clus2                0  1
  JAKMIP2 MUTATED    9  0
  JAKMIP2 WILD-TYPE 97 14
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                9               111 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                0                14 
$`JAKMIP2 MUTATED`
TCGA-A6-2672 TCGA-A6-3808 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A02Y 
       16.54         9.14         0.99         1.02        20.98        39.95 
TCGA-AG-3726 TCGA-AG-A002 TCGA-AG-A014 
        1.02        20.94        15.91 

$`JAKMIP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         0.99         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
             0.99              0.92 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            39.95             72.07 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            15.91             10.92 
[1] "1.0 - 40.0 (15.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D134V2, continuous
D134V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED     10    3
  JAKMIP2 WILD-TYPE  144   65
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON               10               144
  RECTUM               3                65
D134V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED      8    5
  JAKMIP2 WILD-TYPE   99  112
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  FEMALE               8                99
  MALE                 5               112
D134V5, multiclass
                                clus
vv                               JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D134V6, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  T1               0                 9
  T2               5                42
  T3               6               144
  T4               2                15
D134V7, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  N0              11               123
  N1               1                43
  N2               1                45
D134V8, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
D134V9, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  I                 4                44
  II                7                75
  III               2                58
  IV                0                29

Clustering(135) Variable = NRXN3 MUTATION ANALYSIS
D135V1, survival
                 sevent
clus2              0  1
  NRXN3 MUTATED    7  1
  NRXN3 WILD-TYPE 99 13
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              8             112 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              1              13 
$`NRXN3 MUTATED`
TCGA-A6-2672 TCGA-A6-2678 TCGA-AA-3949 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
       16.54        14.37         0.99        18.02         4.01        20.98 
TCGA-AG-3599 TCGA-AG-A002 
        0.99        20.94 

$`NRXN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  NRXN3 MUTATED NRXN3 WILD-TYPE 
           0.99            0.92 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
          20.98           72.07 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
         15.455          10.770 
[1] "1.0 - 21.0 (15.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr=" "1.2"
D135V2, continuous
D135V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     15    2
  NRXN3 WILD-TYPE  139   66
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D135V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      7   10
  NRXN3 WILD-TYPE  100  107
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
D135V5, multiclass
                                clus
vv                               NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D135V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            10             140
  T4             2              15
D135V7, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0            12             122
  N1             4              40
  N2             1              45
D135V8, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
D135V9, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  I               4              44
  II              7              75
  III             5              55
  IV              0              29

Clustering(136) Variable = GRIA4 MUTATION ANALYSIS
D136V1, survival
                 sevent
clus2               0   1
  GRIA4 MUTATED     6   0
  GRIA4 WILD-TYPE 100  14
  GRIA4 MUTATED GRIA4 WILD-TYPE 
              6             114 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
              0              14 
$`GRIA4 MUTATED`
TCGA-A6-2676 TCGA-AA-3877 TCGA-AA-A010 TCGA-AA-A01Z TCGA-AG-A002 TCGA-AG-A036 
       14.70         0.99        20.98        20.98        20.94        72.07 

$`GRIA4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        26.01        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 

  GRIA4 MUTATED GRIA4 WILD-TYPE 
           0.99            0.92 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
          72.07           70.03 
  GRIA4 MUTATED GRIA4 WILD-TYPE 
         20.960          10.505 
[1] "1.0 - 72.1 (21.0)" "0.9 - 70.0 (10.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" "GRIA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIA4 MUTATED" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE" "GRIA4 WILD-TYPE"   "GRIA4 MUTATED" 
[1] "hr="     "7.5e+07"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA4 MUTATED      8    4
  GRIA4 WILD-TYPE  146   64
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D136V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA4 MUTATED      5    7
  GRIA4 WILD-TYPE  102  110
        clus
vv       GRIA4 MUTATED GRIA4 WILD-TYPE
  FEMALE             5             102
  MALE               7             110
D136V5, multiclass
                                clus
vv                               GRIA4 MUTATED GRIA4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D136V6, multiclass
    clus
vv   GRIA4 MUTATED GRIA4 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             1              16
D136V7, multiclass
    clus
vv   GRIA4 MUTATED GRIA4 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             2              44
D136V8, multiclass
     clus
vv    GRIA4 MUTATED GRIA4 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D136V9, multiclass
     clus
vv    GRIA4 MUTATED GRIA4 WILD-TYPE
  I               3              45
  II              6              76
  III             2              58
  IV              1              28

Clustering(137) Variable = SYT16 MUTATION ANALYSIS
D137V1, survival
                 sevent
clus2               0   1
  SYT16 MUTATED     6   0
  SYT16 WILD-TYPE 100  14
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             114 
  SYT16 MUTATED SYT16 WILD-TYPE 
              0              14 
$`SYT16 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-A002 
        9.14         1.02         0.99        35.01         1.02        20.94 

$`SYT16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SYT16 MUTATED SYT16 WILD-TYPE 
           0.99            0.92 
  SYT16 MUTATED SYT16 WILD-TYPE 
          35.01           72.07 
  SYT16 MUTATED SYT16 WILD-TYPE 
           5.08           11.49 
[1] "1.0 - 35.0 (5.1)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      6    3
  SYT16 WILD-TYPE  148   65
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D137V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      4    5
  SYT16 WILD-TYPE  103  112
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  FEMALE             4             103
  MALE               5             112
D137V5, multiclass
                                clus
vv                               SYT16 MUTATED SYT16 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D137V6, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             5             145
  T4             0              17
D137V7, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             1              45
D137V8, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
D137V9, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  I               4              44
  II              4              78
  III             1              59
  IV              0              29

Clustering(138) Variable = ZNF208 MUTATION ANALYSIS
D138V1, survival
                  sevent
clus2                0   1
  ZNF208 MUTATED     5   1
  ZNF208 WILD-TYPE 101  13
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               6              114 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               1               13 
$`ZNF208 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 
        1.02         4.01        20.98         1.02         1.02        20.94 

$`ZNF208 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF208 MUTATED ZNF208 WILD-TYPE 
            1.02             0.92 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
           20.98            72.07 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
[1] "hr=" "2"  
D138V2, continuous
D138V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      8    3
  ZNF208 WILD-TYPE  146   65
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON               8              146
  RECTUM              3               65
D138V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      5    6
  ZNF208 WILD-TYPE  102  111
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  FEMALE              5              102
  MALE                6              111
D138V5, multiclass
                                clus
vv                               ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D138V6, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              3               14
D138V7, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  N0              6              128
  N1              3               41
  N2              2               44
D138V8, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  M0               7              182
  M1               3               28
  M1A              0                1
D138V9, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  I                2               46
  II               3               79
  III              2               58
  IV               3               26

Clustering(139) Variable = DLC1 MUTATION ANALYSIS
D139V1, survival
                sevent
clus2             0  1
  DLC1 MUTATED   14  2
  DLC1 WILD-TYPE 92 12
  DLC1 MUTATED DLC1 WILD-TYPE 
            16            104 
  DLC1 MUTATED DLC1 WILD-TYPE 
             2             12 
$`DLC1 MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 
        1.02         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A03F 
        4.01        27.02        20.98        35.01        35.01        18.02 
TCGA-AG-3583 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N 
        2.01         1.02        20.94        61.94 

$`DLC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02        17.00        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DLC1 MUTATED DLC1 WILD-TYPE 
          0.99           0.92 
  DLC1 MUTATED DLC1 WILD-TYPE 
         61.94          72.07 
  DLC1 MUTATED DLC1 WILD-TYPE 
          3.01          11.49 
[1] "1.0 - 61.9 (3.0)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
[1] "hr=" "1.2"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     16    4
  DLC1 WILD-TYPE  138   64
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  COLON            16            138
  RECTUM            4             64
D139V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     10   10
  DLC1 WILD-TYPE   97  107
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  FEMALE           10             97
  MALE             10            107
D139V5, multiclass
                                clus
vv                               DLC1 MUTATED DLC1 WILD-TYPE
  COLON ADENOCARCINOMA                     12            116
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D139V6, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  T1            1              8
  T2            4             43
  T3           13            137
  T4            2             15
D139V7, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  N0           12            122
  N1            2             42
  N2            6             40
D139V8, multiclass
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  M0            18            171
  M1             1             30
  M1A            0              1
D139V9, multiclass
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  I              4             44
  II             7             75
  III            7             53
  IV             1             28

Clustering(140) Variable = MIER3 MUTATION ANALYSIS
D140V1, survival
                 sevent
clus2              0  1
  MIER3 MUTATED    7  0
  MIER3 WILD-TYPE 99 14
  MIER3 MUTATED MIER3 WILD-TYPE 
              7             113 
  MIER3 MUTATED MIER3 WILD-TYPE 
              0              14 
$`MIER3 MUTATED`
TCGA-A6-2672 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A010 
       16.54         0.99         0.99         0.99         1.02        20.98 
TCGA-AG-A002 
       20.94 

$`MIER3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         8.09         1.02         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MIER3 MUTATED MIER3 WILD-TYPE 
           0.99            0.92 
  MIER3 MUTATED MIER3 WILD-TYPE 
          20.98           72.07 
  MIER3 MUTATED MIER3 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D140V2, continuous
D140V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     10    1
  MIER3 WILD-TYPE  144   67
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  COLON             10             144
  RECTUM             1              67
D140V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      6    5
  MIER3 WILD-TYPE  101  112
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  FEMALE             6             101
  MALE               5             112
D140V5, multiclass
                                clus
vv                               MIER3 MUTATED MIER3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D140V6, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             2              15
D140V7, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             0              46
D140V8, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D140V9, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              0              29

Clustering(141) Variable = BCHE MUTATION ANALYSIS
D141V1, survival
                sevent
clus2              0   1
  BCHE MUTATED     6   0
  BCHE WILD-TYPE 100  14
  BCHE MUTATED BCHE WILD-TYPE 
             6            114 
  BCHE MUTATED BCHE WILD-TYPE 
             0             14 
$`BCHE MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01V TCGA-AG-4007 TCGA-AG-A002 
        0.99         1.02        30.02        35.01         1.02        20.94 

$`BCHE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  BCHE MUTATED BCHE WILD-TYPE 
          0.99           0.92 
  BCHE MUTATED BCHE WILD-TYPE 
         35.01          72.07 
  BCHE MUTATED BCHE WILD-TYPE 
         10.98          10.95 
[1] "1.0 - 35.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
[1] "hr="     "2.7e+07"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      7    2
  BCHE WILD-TYPE  147   66
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  COLON             7            147
  RECTUM            2             66
D141V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      2    7
  BCHE WILD-TYPE  105  110
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            2            105
  MALE              7            110
D141V5, multiclass
                                clus
vv                               BCHE MUTATED BCHE WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D141V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            0              9
  T2            4             43
  T3            4            146
  T4            1             16
D141V7, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  N0            6            128
  N1            0             44
  N2            3             43
D141V8, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D141V9, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              3             45
  II             2             80
  III            2             58
  IV             1             28

Clustering(142) Variable = FSTL5 MUTATION ANALYSIS
D142V1, survival
                 sevent
clus2              0  1
  FSTL5 MUTATED    7  0
  FSTL5 WILD-TYPE 99 14
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              7             113 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              0              14 
$`FSTL5 MUTATED`
TCGA-A6-2672 TCGA-AA-3846 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A010 TCGA-AG-4001 
       16.54         0.99         0.99        30.02        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`FSTL5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  FSTL5 MUTATED FSTL5 WILD-TYPE 
           0.99            0.92 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          30.02           72.07 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          16.54           10.92 
[1] "1.0 - 30.0 (16.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D142V2, continuous
D142V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      8    3
  FSTL5 WILD-TYPE  146   65
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D142V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      8    3
  FSTL5 WILD-TYPE   99  114
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  FEMALE             8              99
  MALE               3             114
D142V5, multiclass
                                clus
vv                               FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D142V6, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             6             144
  T4             3              14
D142V7, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
D142V8, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D142V9, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              1              28

Clustering(143) Variable = PCDH17 MUTATION ANALYSIS
D143V1, survival
                  sevent
clus2               0  1
  PCDH17 MUTATED   11  0
  PCDH17 WILD-TYPE 95 14
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              11              109 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
               0               14 
$`PCDH17 MUTATED`
TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00U 
        0.99         0.99         1.02        13.94        18.02        17.00 
TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A03J TCGA-AG-4007 TCGA-AG-A002 
       20.98        35.01        40.93         1.02        20.94 

$`PCDH17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
       27.02         0.99        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PCDH17 MUTATED PCDH17 WILD-TYPE 
            0.99             0.92 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           40.93            72.07 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           17.00            10.62 
[1] "1.0 - 40.9 (17.0)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D143V2, continuous
D143V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED     14    2
  PCDH17 WILD-TYPE  140   66
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  COLON              14              140
  RECTUM              2               66
D143V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED      7    9
  PCDH17 WILD-TYPE  100  108
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  FEMALE              7              100
  MALE                9              108
D143V5, multiclass
                                clus
vv                               PCDH17 MUTATED PCDH17 WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D143V6, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              9              141
  T4              3               14
D143V7, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  N0             13              121
  N1              1               43
  N2              2               44
D143V8, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  M0              14              175
  M1               1               30
  M1A              0                1
D143V9, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  I                3               45
  II               9               73
  III              2               58
  IV               1               28

Clustering(144) Variable = SORCS1 MUTATION ANALYSIS
D144V1, survival
                  sevent
clus2                0   1
  SORCS1 MUTATED     6   2
  SORCS1 WILD-TYPE 100  12
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8              112 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               2               12 
$`SORCS1 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02J 
        1.02         0.99         1.02         4.01        20.98         5.03 
TCGA-AG-3599 TCGA-AG-4007 
        0.99         1.02 

$`SORCS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SORCS1 MUTATED SORCS1 WILD-TYPE 
            0.99             0.92 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
           20.98            72.07 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
[1] "hr=" "4.8"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     11    4
  SORCS1 WILD-TYPE  143   64
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON              11              143
  RECTUM              4               64
D144V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      7    8
  SORCS1 WILD-TYPE  100  109
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
D144V5, multiclass
                                clus
vv                               SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D144V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              8              142
  T4              5               12
D144V7, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  N0             11              123
  N1              3               41
  N2              1               45
D144V8, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
D144V9, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  I                1               47
  II               8               74
  III              3               57
  IV               2               27

Clustering(145) Variable = LPHN3 MUTATION ANALYSIS
D145V1, survival
                 sevent
clus2              0  1
  LPHN3 MUTATED    8  2
  LPHN3 WILD-TYPE 98 12
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             10             110 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
              2              12 
$`LPHN3 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         1.02         4.01        20.98         1.02 
TCGA-AG-A002 TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A032 
       20.94        70.03         1.94        38.01 

$`LPHN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       12.00        63.98        10.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  LPHN3 MUTATED LPHN3 WILD-TYPE 
           0.99            0.92 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
          70.03           72.07 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
          2.975          11.490 
[1] "1.0 - 70.0 (3.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
[1] "hr=" "1.9"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPHN3 MUTATED      7    6
  LPHN3 WILD-TYPE  147   62
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  COLON              7             147
  RECTUM             6              62
D145V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPHN3 MUTATED      6    7
  LPHN3 WILD-TYPE  101  110
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D145V5, multiclass
                                clus
vv                               LPHN3 MUTATED LPHN3 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D145V6, multiclass
    clus
vv   LPHN3 MUTATED LPHN3 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             5             145
  T4             5              12
D145V7, multiclass
    clus
vv   LPHN3 MUTATED LPHN3 WILD-TYPE
  N0            11             123
  N1             1              43
  N2             1              45
D145V8, multiclass
     clus
vv    LPHN3 MUTATED LPHN3 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D145V9, multiclass
     clus
vv    LPHN3 MUTATED LPHN3 WILD-TYPE
  I               2              46
  II              8              74
  III             1              59
  IV              1              28

Clustering(146) Variable = ABCA12 MUTATION ANALYSIS
D146V1, survival
                  sevent
clus2               0  1
  ABCA12 MUTATED   14  1
  ABCA12 WILD-TYPE 92 13
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              15              105 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
               1               13 
$`ABCA12 MUTATED`
TCGA-AA-3555 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00J 
        0.99         1.02         1.02        13.94        18.02        18.02 
TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01X TCGA-AA-A02O TCGA-AA-A02Y 
        4.01        17.00        20.98        26.01         0.92        39.95 
TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 
        1.02         1.02        20.94 

$`ABCA12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99         0.99        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        2.01         5.03        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ABCA12 MUTATED ABCA12 WILD-TYPE 
            0.92             0.92 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
           39.95            72.07 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
           13.94            10.92 
[1] "0.9 - 40.0 (13.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
[1] "hr=" "1.8"
D146V2, continuous
D146V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     18    4
  ABCA12 WILD-TYPE  136   64
        clus
vv       ABCA12 MUTATED ABCA12 WILD-TYPE
  COLON              18              136
  RECTUM              4               64
D146V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     10   12
  ABCA12 WILD-TYPE   97  105
        clus
vv       ABCA12 MUTATED ABCA12 WILD-TYPE
  FEMALE             10               97
  MALE               12              105
D146V5, multiclass
                                clus
vv                               ABCA12 MUTATED ABCA12 WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D146V6, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  T1              1                8
  T2              6               41
  T3             12              138
  T4              3               14
D146V7, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  N0             16              118
  N1              4               40
  N2              2               44
D146V8, multiclass
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  M0              21              168
  M1               0               31
  M1A              0                1
D146V9, multiclass
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  I                5               43
  II              10               72
  III              6               54
  IV               0               29

Clustering(147) Variable = GPHN MUTATION ANALYSIS
D147V1, survival
                sevent
clus2             0  1
  GPHN MUTATED    8  1
  GPHN WILD-TYPE 98 13
  GPHN MUTATED GPHN WILD-TYPE 
             9            111 
  GPHN MUTATED GPHN WILD-TYPE 
             1             13 
$`GPHN MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01I 
       14.70         1.02         0.99         1.02         1.02        12.00 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AY-4071 
        1.02        35.01         0.95 

$`GPHN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        40.93        16.31        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  GPHN MUTATED GPHN WILD-TYPE 
          0.95           0.92 
  GPHN MUTATED GPHN WILD-TYPE 
         35.01          72.07 
  GPHN MUTATED GPHN WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
[1] "hr=" "1.8"
D147V2, continuous
D147V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED     10    1
  GPHN WILD-TYPE  144   67
        clus
vv       GPHN MUTATED GPHN WILD-TYPE
  COLON            10            144
  RECTUM            1             67
D147V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED      7    5
  GPHN WILD-TYPE  100  112
        clus
vv       GPHN MUTATED GPHN WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D147V5, multiclass
                                clus
vv                               GPHN MUTATED GPHN WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D147V6, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  T1            2              7
  T2            2             45
  T3            7            143
  T4            0             17
D147V7, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  N0           11            123
  N1            0             44
  N2            1             45
D147V8, multiclass
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D147V9, multiclass
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  I              3             45
  II             7             75
  III            1             59
  IV             0             29

Clustering(148) Variable = DSEL MUTATION ANALYSIS
D148V1, survival
                sevent
clus2             0  1
  DSEL MUTATED    8  1
  DSEL WILD-TYPE 98 13
  DSEL MUTATED DSEL WILD-TYPE 
             9            111 
  DSEL MUTATED DSEL WILD-TYPE 
             1             13 
$`DSEL MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01I TCGA-AG-A002 TCGA-AG-A025 
       12.00        20.94        49.94 

$`DSEL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DSEL MUTATED DSEL WILD-TYPE 
          0.99           0.92 
  DSEL MUTATED DSEL WILD-TYPE 
         49.94          72.07 
  DSEL MUTATED DSEL WILD-TYPE 
         12.00          10.92 
[1] "1.0 - 49.9 (12.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
[1] "hr=" "1.1"
D148V2, continuous
D148V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED     12    2
  DSEL WILD-TYPE  142   66
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  COLON            12            142
  RECTUM            2             66
D148V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED      9    5
  DSEL WILD-TYPE   98  112
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  FEMALE            9             98
  MALE              5            112
D148V5, multiclass
                                clus
vv                               DSEL MUTATED DSEL WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D148V6, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  T1            1              8
  T2            3             44
  T3            6            144
  T4            3             14
D148V7, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  N0           11            123
  N1            3             41
  N2            0             46
D148V8, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
D148V9, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  I              3             45
  II             7             75
  III            2             58
  IV             1             28

Clustering(149) Variable = ATP7A MUTATION ANALYSIS
D149V1, survival
                 sevent
clus2               0   1
  ATP7A MUTATED     1   1
  ATP7A WILD-TYPE 105  13
  ATP7A MUTATED ATP7A WILD-TYPE 
              2             118 
  ATP7A MUTATED ATP7A WILD-TYPE 
              1              13 
$`ATP7A MUTATED`
TCGA-A6-2683 TCGA-AA-A03F 
       15.52        18.02 

$`ATP7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ATP7A MUTATED ATP7A WILD-TYPE 
          15.52            0.92 
  ATP7A MUTATED ATP7A WILD-TYPE 
          18.02           72.07 
  ATP7A MUTATED ATP7A WILD-TYPE 
          16.77           10.77 
[1] "15.5 - 18.0 (16.8)" "0.9 - 72.1 (10.8)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
[1] "Remove cluster labels:" "ATP7A MUTATED"         
clus
  ATP7A MUTATED ATP7A WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-3807      TCGA-A6-3808 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03J      TCGA-AY-4070 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
D149V2, continuous
D149V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      5    1
  ATP7A WILD-TYPE  149   67
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D149V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      4    2
  ATP7A WILD-TYPE  103  115
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D149V5, multiclass
                                clus
vv                               ATP7A MUTATED ATP7A WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D149V6, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             3              14
D149V7, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  N0             2             132
  N1             2              42
  N2             2              44
D149V8, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  M0              4             185
  M1              2              29
  M1A             0               1
D149V9, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  I               0              48
  II              1              81
  III             3              57
  IV              2              27

Clustering(150) Variable = ANGPTL5 MUTATION ANALYSIS
D150V1, survival
                   sevent
clus2                 0   1
  ANGPTL5 MUTATED     6   1
  ANGPTL5 WILD-TYPE 100  13
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                7               113 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                1                13 
$`ANGPTL5 MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A01P 
        8.09         0.99         0.99         1.02        18.02        38.07 
TCGA-AG-A002 
       20.94 

$`ANGPTL5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       30.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
             0.99              0.92 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
            38.07             72.07 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
             8.09             10.98 
[1] "1.0 - 38.1 (8.1)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
[1] "hr=" "1.4"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      7    1
  ANGPTL5 WILD-TYPE  147   67
        clus
vv       ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  COLON                7               147
  RECTUM               1                67
D150V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      4    4
  ANGPTL5 WILD-TYPE  103  113
        clus
vv       ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  FEMALE               4               103
  MALE                 4               113
D150V5, multiclass
                                clus
vv                               ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D150V6, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               2                15
D150V7, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               1                45
D150V8, multiclass
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  M0                7               182
  M1                0                31
  M1A               0                 1
D150V9, multiclass
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  I                 1                47
  II                3                79
  III               3                57
  IV                0                29

Clustering(151) Variable = SH3GL3 MUTATION ANALYSIS
D151V1, survival
                  sevent
clus2                0   1
  SH3GL3 MUTATED     5   1
  SH3GL3 WILD-TYPE 101  13
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               6              114 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               1               13 
$`SH3GL3 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01S TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A026 
        1.02        20.98         1.02         1.02        20.94         1.94 

$`SH3GL3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
            1.02             0.92 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
           20.98            72.07 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
            1.48            11.49 
[1] "1.0 - 21.0 (1.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
[1] "hr=" "2.1"
D151V2, continuous
D151V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      5    3
  SH3GL3 WILD-TYPE  149   65
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D151V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      5    3
  SH3GL3 WILD-TYPE  102  114
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D151V5, multiclass
                                clus
vv                               SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D151V6, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              2               15
D151V7, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              0               46
D151V8, multiclass
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D151V9, multiclass
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  I                1               47
  II               4               78
  III              2               58
  IV               0               29

Clustering(152) Variable = LRP2 MUTATION ANALYSIS
D152V1, survival
                sevent
clus2             0  1
  LRP2 MUTATED   19  3
  LRP2 WILD-TYPE 87 11
  LRP2 MUTATED LRP2 WILD-TYPE 
            22             98 
  LRP2 MUTATED LRP2 WILD-TYPE 
             3             11 
$`LRP2 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         0.99         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
        1.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A02O 
       20.98        38.07         1.02        35.01        33.04         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A014 TCGA-AG-A02G 
        1.02        20.94        15.91        38.93 

$`LRP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00Q 
       13.94        18.02        19.00        30.02        18.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01V 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  LRP2 MUTATED LRP2 WILD-TYPE 
          0.92           0.92 
  LRP2 MUTATED LRP2 WILD-TYPE 
         38.93          72.07 
  LRP2 MUTATED LRP2 WILD-TYPE 
          9.96          10.95 
[1] "0.9 - 38.9 (10.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
[1] "hr=" "1.4"
D152V2, continuous
D152V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     28    7
  LRP2 WILD-TYPE  126   61
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  COLON            28            126
  RECTUM            7             61
D152V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     19   16
  LRP2 WILD-TYPE   88  101
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  FEMALE           19             88
  MALE             16            101
D152V5, multiclass
                                clus
vv                               LRP2 MUTATED LRP2 WILD-TYPE
  COLON ADENOCARCINOMA                     19            109
  COLON MUCINOUS ADENOCARCINOMA             8             16
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D152V6, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  T1            2              7
  T2            7             40
  T3           21            129
  T4            5             12
D152V7, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  N0           22            112
  N1            7             37
  N2            6             40
D152V8, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  M0            32            157
  M1             2             29
  M1A            0              1
D152V9, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  I              7             41
  II            14             68
  III           11             49
  IV             2             27

Clustering(153) Variable = LUZP2 MUTATION ANALYSIS
D153V1, survival
                 sevent
clus2               0   1
  LUZP2 MUTATED     1   1
  LUZP2 WILD-TYPE 105  13
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              2             118 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              13 
$`LUZP2 MUTATED`
TCGA-AA-A00N TCGA-AG-A002 
        4.01        20.94 

$`LUZP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  LUZP2 MUTATED LUZP2 WILD-TYPE 
           4.01            0.92 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
          20.94           72.07 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
         12.475          10.950 
[1] "4.0 - 20.9 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "Remove cluster labels:" "LUZP2 MUTATED"         
clus
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
D153V2, continuous
D153V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      4    2
  LUZP2 WILD-TYPE  150   66
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D153V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      1    5
  LUZP2 WILD-TYPE  106  112
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             1             106
  MALE               5             112
D153V5, multiclass
                                clus
vv                               LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D153V6, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D153V7, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  N0             4             130
  N1             2              42
  N2             0              46
D153V8, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D153V9, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  I               1              47
  II              3              79
  III             2              58
  IV              0              29

Clustering(154) Variable = EIF4A2 MUTATION ANALYSIS
D154V1, survival
                  sevent
clus2                0   1
  EIF4A2 MUTATED     2   0
  EIF4A2 WILD-TYPE 104  14
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               2              118 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               0               14 
$`EIF4A2 MUTATED`
TCGA-AA-A017 TCGA-AG-A01Y 
       15.02        63.98 

$`EIF4A2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        20.98         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           15.02             0.92 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           63.98            72.07 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           39.50            10.77 
[1] "15.0 - 64.0 (39.5)" "0.9 - 72.1 (10.8)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
[1] "Remove cluster labels:" "EIF4A2 MUTATED"        
clus
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A020       TCGA-AG-A025 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
D154V2, continuous
D154V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      4    1
  EIF4A2 WILD-TYPE  150   67
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D154V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      3    2
  EIF4A2 WILD-TYPE  104  115
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  FEMALE              3              104
  MALE                2              115
D154V5, multiclass
                                clus
vv                               EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D154V6, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              3              147
  T4              1               16
D154V7, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              0               46
D154V8, multiclass
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
D154V9, multiclass
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  I                1               47
  II               3               79
  III              0               60
  IV               1               28

Clustering(155) Variable = CASP8 MUTATION ANALYSIS
D155V1, survival
                 sevent
clus2              0  1
  CASP8 MUTATED    7  0
  CASP8 WILD-TYPE 99 14
  CASP8 MUTATED CASP8 WILD-TYPE 
              7             113 
  CASP8 MUTATED CASP8 WILD-TYPE 
              0              14 
$`CASP8 MUTATED`
TCGA-AA-3518 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00J 
        1.02         1.02         0.99         0.99        18.02        18.02 
TCGA-AA-A00R 
        0.99 

$`CASP8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  CASP8 MUTATED CASP8 WILD-TYPE 
           0.99            0.92 
  CASP8 MUTATED CASP8 WILD-TYPE 
          18.02           72.07 
  CASP8 MUTATED CASP8 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED     10    0
  CASP8 WILD-TYPE  144   68
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  COLON             10             144
  RECTUM             0              68
D155V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      5    5
  CASP8 WILD-TYPE  102  112
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D155V5, multiclass
                                clus
vv                               CASP8 MUTATED CASP8 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D155V6, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             5             145
  T4             3              14
D155V7, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             0              46
D155V8, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D155V9, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  I               2              46
  II              7              75
  III             1              59
  IV              0              29

Clustering(156) Variable = KCNH5 MUTATION ANALYSIS
D156V1, survival
                 sevent
clus2              0  1
  KCNH5 MUTATED    9  0
  KCNH5 WILD-TYPE 97 14
  KCNH5 MUTATED KCNH5 WILD-TYPE 
              9             111 
  KCNH5 MUTATED KCNH5 WILD-TYPE 
              0              14 
$`KCNH5 MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01X TCGA-AG-3878 
        0.99         1.02        20.98        35.01        26.01         0.99 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A015 
        1.02        20.94        13.02 

$`KCNH5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.95         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        15.91         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  KCNH5 MUTATED KCNH5 WILD-TYPE 
           0.99            0.92 
  KCNH5 MUTATED KCNH5 WILD-TYPE 
          35.01           72.07 
  KCNH5 MUTATED KCNH5 WILD-TYPE 
          13.02           10.92 
[1] "1.0 - 35.0 (13.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH5 WILD-TYPE"   "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH5 MUTATED" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE"   "KCNH5 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" "KCNH5 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D156V2, continuous
D156V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH5 MUTATED      9    4
  KCNH5 WILD-TYPE  145   64
        clus
vv       KCNH5 MUTATED KCNH5 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D156V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH5 MUTATED      6    7
  KCNH5 WILD-TYPE  101  110
        clus
vv       KCNH5 MUTATED KCNH5 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
D156V5, multiclass
                                clus
vv                               KCNH5 MUTATED KCNH5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D156V6, multiclass
    clus
vv   KCNH5 MUTATED KCNH5 WILD-TYPE
  T1             2               7
  T2             5              42
  T3             5             145
  T4             1              16
D156V7, multiclass
    clus
vv   KCNH5 MUTATED KCNH5 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D156V8, multiclass
     clus
vv    KCNH5 MUTATED KCNH5 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
D156V9, multiclass
     clus
vv    KCNH5 MUTATED KCNH5 WILD-TYPE
  I               5              43
  II              4              78
  III             2              58
  IV              1              28

Clustering(157) Variable = RNASE11 MUTATION ANALYSIS
D157V1, survival
                   sevent
clus2                 0   1
  RNASE11 MUTATED     4   0
  RNASE11 WILD-TYPE 102  14
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                4               116 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                0                14 
$`RNASE11 MUTATED`
TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A010 TCGA-AA-A02W 
        1.02        19.00        20.98        40.96 

$`RNASE11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  RNASE11 MUTATED RNASE11 WILD-TYPE 
             1.02              0.92 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            40.96             72.07 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            19.99             10.77 
[1] "1.0 - 41.0 (20.0)" "0.9 - 72.1 (10.8)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D157V2, continuous
D157V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      5    0
  RNASE11 WILD-TYPE  149   68
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON                5               149
  RECTUM               0                68
D157V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      3    2
  RNASE11 WILD-TYPE  104  115
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
D157V5, multiclass
                                clus
vv                               RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D157V6, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               1               149
  T4               1                16
D157V7, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  N0               5               129
  N1               0                44
  N2               0                46
D157V8, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
D157V9, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  I                 2                46
  II                2                80
  III               0                60
  IV                0                29

Clustering(158) Variable = ESR1 MUTATION ANALYSIS
D158V1, survival
                sevent
clus2              0   1
  ESR1 MUTATED     5   1
  ESR1 WILD-TYPE 101  13
  ESR1 MUTATED ESR1 WILD-TYPE 
             6            114 
  ESR1 MUTATED ESR1 WILD-TYPE 
             1             13 
$`ESR1 MUTATED`
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q 
        0.99         0.99         1.02         4.01        20.98         1.02 

$`ESR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ESR1 MUTATED ESR1 WILD-TYPE 
          0.99           0.92 
  ESR1 MUTATED ESR1 WILD-TYPE 
         20.98          72.07 
  ESR1 MUTATED ESR1 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
[1] "hr=" "3"  
D158V2, continuous
D158V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED     11    0
  ESR1 WILD-TYPE  143   68
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  COLON            11            143
  RECTUM            0             68
D158V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      5    6
  ESR1 WILD-TYPE  102  111
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  FEMALE            5            102
  MALE              6            111
D158V5, multiclass
                                clus
vv                               ESR1 MUTATED ESR1 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D158V6, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            5            145
  T4            4             13
D158V7, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  N0            7            127
  N1            3             41
  N2            1             45
D158V8, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D158V9, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  I              1             47
  II             5             77
  III            4             56
  IV             0             29

Clustering(159) Variable = PCBP1 MUTATION ANALYSIS
D159V1, survival
                 sevent
clus2               0   1
  PCBP1 MUTATED     4   0
  PCBP1 WILD-TYPE 102  14
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             116 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              0              14 
$`PCBP1 MUTATED`
TCGA-AA-3941 TCGA-AA-A01I TCGA-AG-3894 TCGA-AG-A002 
        1.02        12.00         0.99        20.94 

$`PCBP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCBP1 MUTATED PCBP1 WILD-TYPE 
           0.99            0.92 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
          20.94           72.07 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
           6.51           10.95 
[1] "1.0 - 20.9 (6.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D159V2, continuous
D159V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    2
  PCBP1 WILD-TYPE  150   66
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D159V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      2    4
  PCBP1 WILD-TYPE  105  113
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D159V5, multiclass
                                clus
vv                               PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D159V6, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D159V7, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D159V8, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             1               0
D159V9, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  I               2              46
  II              3              79
  III             0              60
  IV              1              28

Clustering(160) Variable = POSTN MUTATION ANALYSIS
D160V1, survival
                 sevent
clus2               0   1
  POSTN MUTATED     4   2
  POSTN WILD-TYPE 102  12
  POSTN MUTATED POSTN WILD-TYPE 
              6             114 
  POSTN MUTATED POSTN WILD-TYPE 
              2              12 
$`POSTN MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01G TCGA-AA-A01R 
        1.02         1.02         1.02         4.01        12.00        35.01 

$`POSTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  POSTN MUTATED POSTN WILD-TYPE 
           1.02            0.92 
  POSTN MUTATED POSTN WILD-TYPE 
          35.01           72.07 
  POSTN MUTATED POSTN WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
[1] "hr=" "5"  
D160V2, continuous
D160V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     11    0
  POSTN WILD-TYPE  143   68
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  COLON             11             143
  RECTUM             0              68
D160V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      5    6
  POSTN WILD-TYPE  102  111
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D160V5, multiclass
                                clus
vv                               POSTN MUTATED POSTN WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D160V6, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             1              16
D160V7, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  N0             9             125
  N1             0              44
  N2             2              44
D160V8, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D160V9, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  I               1              47
  II              7              75
  III             2              58
  IV              0              29

Clustering(161) Variable = ZNF99 MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2              0  1
  ZNF99 MUTATED    7  2
  ZNF99 WILD-TYPE 99 12
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              9             111 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              2              12 
$`ZNF99 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        0.99         0.99         1.02         4.01        20.98        18.02 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-A002 
        1.02         0.99        20.94 

$`ZNF99 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZNF99 MUTATED ZNF99 WILD-TYPE 
           0.99            0.92 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
          20.98           72.07 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
[1] "hr=" "3.2"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      8    3
  ZNF99 WILD-TYPE  146   65
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D161V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      5    6
  ZNF99 WILD-TYPE  102  111
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D161V5, multiclass
                                clus
vv                               ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D161V6, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             6             144
  T4             2              15
D161V7, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
D161V8, multiclass
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D161V9, multiclass
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  I               2              46
  II              5              77
  III             3              57
  IV              0              29

Clustering(162) Variable = CD1E MUTATION ANALYSIS
D162V1, survival
                sevent
clus2              0   1
  CD1E MUTATED     1   0
  CD1E WILD-TYPE 105  14
  CD1E MUTATED CD1E WILD-TYPE 
             1            119 
  CD1E MUTATED CD1E WILD-TYPE 
             0             14 
$`CD1E MUTATED`
TCGA-AA-A01I 
          12 

$`CD1E WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  CD1E MUTATED CD1E WILD-TYPE 
         12.00           0.92 
  CD1E MUTATED CD1E WILD-TYPE 
         12.00          72.07 
  CD1E MUTATED CD1E WILD-TYPE 
         12.00          10.92 
[1] "12.0 - 12.0 (12.0)" "0.9 - 72.1 (10.9)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
[1] "Remove cluster labels:" "CD1E MUTATED"          
clus
  CD1E MUTATED CD1E WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
D162V2, continuous
D162V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      5    1
  CD1E WILD-TYPE  149   67
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D162V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      3    3
  CD1E WILD-TYPE  104  114
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  FEMALE            3            104
  MALE              3            114
D162V5, multiclass
                                clus
vv                               CD1E MUTATED CD1E WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D162V6, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            0             17
D162V7, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  N0            4            130
  N1            0             44
  N2            2             44
D162V8, multiclass
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  M0             4            185
  M1             2             29
  M1A            0              1
D162V9, multiclass
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  I              2             46
  II             2             80
  III            0             60
  IV             2             27

Clustering(163) Variable = CTSO MUTATION ANALYSIS
D163V1, survival
                sevent
clus2              0   1
  CTSO MUTATED     4   0
  CTSO WILD-TYPE 102  14
  CTSO MUTATED CTSO WILD-TYPE 
             4            116 
  CTSO MUTATED CTSO WILD-TYPE 
             0             14 
$`CTSO MUTATED`
TCGA-AA-A00E TCGA-AA-A00U TCGA-AA-A01Q TCGA-AG-A002 
       30.02        17.00         1.02        20.94 

$`CTSO WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CTSO MUTATED CTSO WILD-TYPE 
          1.02           0.92 
  CTSO MUTATED CTSO WILD-TYPE 
         30.02          72.07 
  CTSO MUTATED CTSO WILD-TYPE 
         18.97          10.77 
[1] "1.0 - 30.0 (19.0)" "0.9 - 72.1 (10.8)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CTSO WILD-TYPE"   "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CTSO MUTATED" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" "CTSO WILD-TYPE" 
[1] "hr="     "2.6e+07"
D163V2, continuous
D163V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      4    2
  CTSO WILD-TYPE  150   66
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  COLON             4            150
  RECTUM            2             66
D163V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTSO MUTATED      1    5
  CTSO WILD-TYPE  106  112
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  FEMALE            1            106
  MALE              5            112
D163V5, multiclass
                                clus
vv                               CTSO MUTATED CTSO WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D163V6, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            0             17
D163V7, multiclass
    clus
vv   CTSO MUTATED CTSO WILD-TYPE
  N0            4            130
  N1            1             43
  N2            1             45
D163V8, multiclass
     clus
vv    CTSO MUTATED CTSO WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D163V9, multiclass
     clus
vv    CTSO MUTATED CTSO WILD-TYPE
  I              1             47
  II             3             79
  III            1             59
  IV             1             28

Clustering(164) Variable = ME1 MUTATION ANALYSIS
D164V1, survival
               sevent
clus2             0   1
  ME1 MUTATED     5   0
  ME1 WILD-TYPE 101  14
  ME1 MUTATED ME1 WILD-TYPE 
            5           115 
  ME1 MUTATED ME1 WILD-TYPE 
            0            14 
$`ME1 MUTATED`
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3947 TCGA-AA-A01I TCGA-AG-A002 
        0.99         1.02         0.99        12.00        20.94 

$`ME1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ME1 MUTATED ME1 WILD-TYPE 
         0.99          0.92 
  ME1 MUTATED ME1 WILD-TYPE 
        20.94         72.07 
  ME1 MUTATED ME1 WILD-TYPE 
         1.02         10.98 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D164V2, continuous
D164V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      7    2
  ME1 WILD-TYPE  147   66
        clus
vv       ME1 MUTATED ME1 WILD-TYPE
  COLON            7           147
  RECTUM           2            66
D164V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      4    5
  ME1 WILD-TYPE  103  112
        clus
vv       ME1 MUTATED ME1 WILD-TYPE
  FEMALE           4           103
  MALE             5           112
D164V5, multiclass
                                clus
vv                               ME1 MUTATED ME1 WILD-TYPE
  COLON ADENOCARCINOMA                     5           123
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D164V6, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  T1           0             9
  T2           3            44
  T3           4           146
  T4           2            15
D164V7, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  N0           5           129
  N1           2            42
  N2           2            44
D164V8, multiclass
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  M0            8           181
  M1            1            30
  M1A           0             1
D164V9, multiclass
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  I             2            46
  II            3            79
  III           3            57
  IV            1            28

Clustering(165) Variable = ZNF593 MUTATION ANALYSIS
D165V1, survival
                  sevent
clus2                0   1
  ZNF593 MUTATED     4   0
  ZNF593 WILD-TYPE 102  14
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               4              116 
  ZNF593 MUTATED ZNF593 WILD-TYPE 
               0               14 
$`ZNF593 MUTATED`
TCGA-AA-3710 TCGA-AA-3966 TCGA-AA-3977 TCGA-AG-A025 
        1.02         1.02         1.02        49.94 

$`ZNF593 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ZNF593 MUTATED ZNF593 WILD-TYPE 
            1.02             0.92 
  ZNF593 MUTATED ZNF593 WILD-TYPE 
           49.94            72.07 
  ZNF593 MUTATED ZNF593 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 49.9 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE"   "ZNF593 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF593 WILD-TYPE"   "ZNF593 MUTATED" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" "ZNF593 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF593 MUTATED      3    1
  ZNF593 WILD-TYPE  151   67
        clus
vv       ZNF593 MUTATED ZNF593 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D165V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF593 MUTATED      3    1
  ZNF593 WILD-TYPE  104  116
        clus
vv       ZNF593 MUTATED ZNF593 WILD-TYPE
  FEMALE              3              104
  MALE                1              116
D165V5, multiclass
                                clus
vv                               ZNF593 MUTATED ZNF593 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D165V6, multiclass
    clus
vv   ZNF593 MUTATED ZNF593 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              2              148
  T4              0               17
D165V7, multiclass
    clus
vv   ZNF593 MUTATED ZNF593 WILD-TYPE
  N0              4              130
  N1              0               44
  N2              0               46
D165V8, multiclass
     clus
vv    ZNF593 MUTATED ZNF593 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D165V9, multiclass
     clus
vv    ZNF593 MUTATED ZNF593 WILD-TYPE
  I                1               47
  II               2               80
  III              0               60
  IV               0               29

Clustering(166) Variable = LASS3 MUTATION ANALYSIS
D166V1, survival
                 sevent
clus2               0   1
  LASS3 MUTATED     6   1
  LASS3 WILD-TYPE 100  13
  LASS3 MUTATED LASS3 WILD-TYPE 
              7             113 
  LASS3 MUTATED LASS3 WILD-TYPE 
              1              13 
$`LASS3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01I TCGA-AG-3892 TCGA-AG-A002 
        1.02         1.02        20.98        12.00         1.02        20.94 
TCGA-AG-A026 
        1.94 

$`LASS3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  LASS3 MUTATED LASS3 WILD-TYPE 
           1.02            0.92 
  LASS3 MUTATED LASS3 WILD-TYPE 
          20.98           72.07 
  LASS3 MUTATED LASS3 WILD-TYPE 
           1.94           10.98 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
[1] "hr=" "1.7"
D166V2, continuous
D166V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      6    3
  LASS3 WILD-TYPE  148   65
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D166V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      5    4
  LASS3 WILD-TYPE  102  113
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  FEMALE             5             102
  MALE               4             113
D166V5, multiclass
                                clus
vv                               LASS3 MUTATED LASS3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D166V6, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             3             147
  T4             2              15
D166V7, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             0              46
D166V8, multiclass
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D166V9, multiclass
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  I               3              45
  II              4              78
  III             1              59
  IV              0              29

Clustering(167) Variable = IL18R1 MUTATION ANALYSIS
D167V1, survival
                  sevent
clus2                0   1
  IL18R1 MUTATED     6   0
  IL18R1 WILD-TYPE 100  14
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               6              114 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               0               14 
$`IL18R1 MUTATED`
TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-3892 TCGA-AG-A002 
        0.99        18.02        20.98         0.92         1.02        20.94 

$`IL18R1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  IL18R1 MUTATED IL18R1 WILD-TYPE 
            0.92             0.92 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           20.98            72.07 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
            9.52            10.95 
[1] "0.9 - 21.0 (9.5)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      8    2
  IL18R1 WILD-TYPE  146   66
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D167V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      5    5
  IL18R1 WILD-TYPE  102  112
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
D167V5, multiclass
                                clus
vv                               IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D167V6, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  T1              2                7
  T2              2               45
  T3              4              146
  T4              2               15
D167V7, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              2               44
D167V8, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
D167V9, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  I                3               45
  II               2               80
  III              5               55
  IV               0               29

Clustering(168) Variable = PTEN MUTATION ANALYSIS
D168V1, survival
                sevent
clus2              0   1
  PTEN MUTATED     4   0
  PTEN WILD-TYPE 102  14
  PTEN MUTATED PTEN WILD-TYPE 
             4            116 
  PTEN MUTATED PTEN WILD-TYPE 
             0             14 
$`PTEN MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.98         1.02        20.94 

$`PTEN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PTEN MUTATED PTEN WILD-TYPE 
          1.02           0.92 
  PTEN MUTATED PTEN WILD-TYPE 
         20.98          72.07 
  PTEN MUTATED PTEN WILD-TYPE 
         10.98          10.95 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D168V2, continuous
D168V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    3
  PTEN WILD-TYPE  150   65
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D168V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    3
  PTEN WILD-TYPE  103  114
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D168V5, multiclass
                                clus
vv                               PTEN MUTATED PTEN WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D168V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            1              8
  T2            2             45
  T3            3            147
  T4            1             16
D168V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0            5            129
  N1            1             43
  N2            1             45
D168V8, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D168V9, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  I              2             46
  II             2             80
  III            1             59
  IV             1             28

Clustering(169) Variable = COL6A6 MUTATION ANALYSIS
D169V1, survival
                  sevent
clus2               0  1
  COL6A6 MUTATED    9  2
  COL6A6 WILD-TYPE 97 12
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              11              109 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               2               12 
$`COL6A6 MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00N 
        9.14         0.99         0.99         1.02         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A02Y TCGA-AF-3913 TCGA-AG-A002 
       20.98        51.95        39.95        10.39        20.94 

$`COL6A6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  COL6A6 MUTATED COL6A6 WILD-TYPE 
            0.99             0.92 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
           51.95            72.07 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
            9.14            12.00 
[1] "1.0 - 52.0 (9.1)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
[1] "hr=" "1.4"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED     14    2
  COL6A6 WILD-TYPE  140   66
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  COLON              14              140
  RECTUM              2               66
D169V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      5   11
  COL6A6 WILD-TYPE  102  106
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  FEMALE              5              102
  MALE               11              106
D169V5, multiclass
                                clus
vv                               COL6A6 MUTATED COL6A6 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D169V6, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  T1              0                9
  T2              5               42
  T3              8              142
  T4              3               14
D169V7, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  N0             14              120
  N1              2               42
  N2              0               46
D169V8, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  M0              14              175
  M1               1               30
  M1A              0                1
D169V9, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  I                4               44
  II               9               73
  III              1               59
  IV               0               29

Clustering(170) Variable = NCKAP5 MUTATION ANALYSIS
D170V1, survival
                  sevent
clus2               0  1
  NCKAP5 MUTATED    9  1
  NCKAP5 WILD-TYPE 97 13
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              10              110 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               1               13 
$`NCKAP5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02F TCGA-AG-A002 
       35.01        35.01        39.95        20.94 

$`NCKAP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            0.99             0.92 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
           39.95            72.07 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
          12.475           10.950 
[1] "1.0 - 40.0 (12.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
[1] "hr=" "1.3"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     13    2
  NCKAP5 WILD-TYPE  141   66
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON              13              141
  RECTUM              2               66
D170V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED      7    8
  NCKAP5 WILD-TYPE  100  109
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
D170V5, multiclass
                                clus
vv                               NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D170V6, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              8              142
  T4              3               14
D170V7, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              3               43
D170V8, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  M0              11              178
  M1               3               28
  M1A              0                1
D170V9, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  I                2               46
  II               5               77
  III              4               56
  IV               3               26

Clustering(171) Variable = NALCN MUTATION ANALYSIS
D171V1, survival
                 sevent
clus2              0  1
  NALCN MUTATED   11  1
  NALCN WILD-TYPE 95 13
  NALCN MUTATED NALCN WILD-TYPE 
             12             108 
  NALCN MUTATED NALCN WILD-TYPE 
              1              13 
$`NALCN MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 
       16.54         0.99         0.99         1.02        30.02        20.98 
TCGA-AA-A01Q TCGA-AA-A01Z TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A036 
        1.02        20.98         1.02        20.94        38.93        72.07 

$`NALCN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        61.94        40.96        38.01 

  NALCN MUTATED NALCN WILD-TYPE 
           0.99            0.92 
  NALCN MUTATED NALCN WILD-TYPE 
          72.07           70.03 
  NALCN MUTATED NALCN WILD-TYPE 
          18.74           10.77 
[1] "1.0 - 72.1 (18.7)" "0.9 - 70.0 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
[1] "hr=" "1.8"
D171V2, continuous
D171V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     14    6
  NALCN WILD-TYPE  140   62
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D171V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      9   11
  NALCN WILD-TYPE   98  106
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE             9              98
  MALE              11             106
D171V5, multiclass
                                clus
vv                               NALCN MUTATED NALCN WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D171V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             1               8
  T2             4              43
  T3            13             137
  T4             2              15
D171V7, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  N0            16             118
  N1             2              42
  N2             2              44
D171V8, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  M0             17             172
  M1              1              30
  M1A             0               1
D171V9, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  I               2              46
  II             12              70
  III             3              57
  IV              1              28

Clustering(172) Variable = TRIM55 MUTATION ANALYSIS
D172V1, survival
                  sevent
clus2                0   1
  TRIM55 MUTATED     5   1
  TRIM55 WILD-TYPE 101  13
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               6              114 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
               1               13 
$`TRIM55 MUTATED`
TCGA-A6-2676 TCGA-A6-2677 TCGA-AA-A00N TCGA-AG-3583 TCGA-AG-3892 TCGA-AG-A002 
       14.70        17.79         4.01         2.01         1.02        20.94 

$`TRIM55 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TRIM55 MUTATED TRIM55 WILD-TYPE 
            1.02             0.92 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
           20.94            72.07 
  TRIM55 MUTATED TRIM55 WILD-TYPE 
           9.355           10.950 
[1] "1.0 - 20.9 (9.4)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM55 WILD-TYPE"   "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TRIM55 MUTATED" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" "TRIM55 WILD-TYPE" 
[1] "hr=" "1.7"
D172V2, continuous
D172V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM55 MUTATED      6    3
  TRIM55 WILD-TYPE  148   65
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D172V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM55 MUTATED      5    4
  TRIM55 WILD-TYPE  102  113
        clus
vv       TRIM55 MUTATED TRIM55 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
D172V5, multiclass
                                clus
vv                               TRIM55 MUTATED TRIM55 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D172V6, multiclass
    clus
vv   TRIM55 MUTATED TRIM55 WILD-TYPE
  T1              2                7
  T2              1               46
  T3              4              146
  T4              1               16
D172V7, multiclass
    clus
vv   TRIM55 MUTATED TRIM55 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              2               44
D172V8, multiclass
     clus
vv    TRIM55 MUTATED TRIM55 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D172V9, multiclass
     clus
vv    TRIM55 MUTATED TRIM55 WILD-TYPE
  I                3               45
  II               4               78
  III              1               59
  IV               1               28

Clustering(173) Variable = POLI MUTATION ANALYSIS
D173V1, survival
                sevent
clus2              0   1
  POLI MUTATED     6   1
  POLI WILD-TYPE 100  13
  POLI MUTATED POLI WILD-TYPE 
             7            113 
  POLI MUTATED POLI WILD-TYPE 
             1             13 
$`POLI MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-3878 
        0.99         1.02         4.01        20.98         0.92         0.99 
TCGA-AG-A002 
       20.94 

$`POLI WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  POLI MUTATED POLI WILD-TYPE 
          0.92           0.92 
  POLI MUTATED POLI WILD-TYPE 
         20.98          72.07 
  POLI MUTATED POLI WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"POLI WILD-TYPE"   "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE"   "POLI MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "POLI MUTATED" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" "POLI WILD-TYPE" 
[1] "hr=" "2.2"
D173V2, continuous
D173V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POLI MUTATED      6    2
  POLI WILD-TYPE  148   66
        clus
vv       POLI MUTATED POLI WILD-TYPE
  COLON             6            148
  RECTUM            2             66
D173V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POLI MUTATED      2    6
  POLI WILD-TYPE  105  111
        clus
vv       POLI MUTATED POLI WILD-TYPE
  FEMALE            2            105
  MALE              6            111
D173V5, multiclass
                                clus
vv                               POLI MUTATED POLI WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D173V6, multiclass
    clus
vv   POLI MUTATED POLI WILD-TYPE
  T1            0              9
  T2            3             44
  T3            2            148
  T4            3             14
D173V7, multiclass
    clus
vv   POLI MUTATED POLI WILD-TYPE
  N0            7            127
  N1            1             43
  N2            0             46
D173V8, multiclass
     clus
vv    POLI MUTATED POLI WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D173V9, multiclass
     clus
vv    POLI MUTATED POLI WILD-TYPE
  I              2             46
  II             4             78
  III            1             59
  IV             0             29

Clustering(174) Variable = PCDHA13 MUTATION ANALYSIS
D174V1, survival
                   sevent
clus2                0  1
  PCDHA13 MUTATED    8  2
  PCDHA13 WILD-TYPE 98 12
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
               10               110 
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
                2                12 
$`PCDHA13 MUTATED`
TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A024 TCGA-AG-3583 
        1.02         0.99         1.02         4.01        39.06         2.01 
TCGA-AG-3893 TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A00C 
        0.99         1.02        20.94         6.02 

$`PCDHA13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         1.02         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02        13.91        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
             0.99              0.92 
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
            39.06             72.07 
  PCDHA13 MUTATED PCDHA13 WILD-TYPE 
            1.515            12.000 
[1] "1.0 - 39.1 (1.5)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE"   "PCDHA13 MUTATED" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" "PCDHA13 WILD-TYPE" 
[1] "hr=" "2.3"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA13 MUTATED      8    6
  PCDHA13 WILD-TYPE  146   62
        clus
vv       PCDHA13 MUTATED PCDHA13 WILD-TYPE
  COLON                8               146
  RECTUM               6                62
D174V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA13 MUTATED      7    7
  PCDHA13 WILD-TYPE  100  110
        clus
vv       PCDHA13 MUTATED PCDHA13 WILD-TYPE
  FEMALE               7               100
  MALE                 7               110
D174V5, multiclass
                                clus
vv                               PCDHA13 MUTATED PCDHA13 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        5                52
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D174V6, multiclass
    clus
vv   PCDHA13 MUTATED PCDHA13 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3              12               138
  T4               1                16
D174V7, multiclass
    clus
vv   PCDHA13 MUTATED PCDHA13 WILD-TYPE
  N0               9               125
  N1               3                41
  N2               2                44
D174V8, multiclass
     clus
vv    PCDHA13 MUTATED PCDHA13 WILD-TYPE
  M0               12               177
  M1                2                29
  M1A               0                 1
D174V9, multiclass
     clus
vv    PCDHA13 MUTATED PCDHA13 WILD-TYPE
  I                 1                47
  II                8                74
  III               3                57
  IV                2                27

Clustering(175) Variable = OR4A15 MUTATION ANALYSIS
D175V1, survival
                  sevent
clus2                0   1
  OR4A15 MUTATED     3   1
  OR4A15 WILD-TYPE 103  13
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               4              116 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               1               13 
$`OR4A15 MUTATED`
TCGA-A6-3808 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        9.14         4.01        20.98        12.00 

$`OR4A15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR4A15 MUTATED OR4A15 WILD-TYPE 
            4.01             0.92 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           20.98            72.07 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           10.57            10.95 
[1] "4.0 - 21.0 (10.6)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
[1] "hr=" "2.3"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      6    0
  OR4A15 WILD-TYPE  148   68
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  COLON               6              148
  RECTUM              0               68
D175V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      1    5
  OR4A15 WILD-TYPE  106  112
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              1              106
  MALE                5              112
D175V5, multiclass
                                clus
vv                               OR4A15 MUTATED OR4A15 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D175V6, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              1              149
  T4              2               15
D175V7, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D175V8, multiclass
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D175V9, multiclass
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  I                2               46
  II               3               79
  III              1               59
  IV               0               29

Clustering(176) Variable = NDUFAF4 MUTATION ANALYSIS
D176V1, survival
                   sevent
clus2                 0   1
  NDUFAF4 MUTATED     1   1
  NDUFAF4 WILD-TYPE 105  13
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                2               118 
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                1                13 
$`NDUFAF4 MUTATED`
TCGA-AA-A00N TCGA-AG-3599 
        4.01         0.99 

$`NDUFAF4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
             0.99              0.92 
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
             4.01             72.07 
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
             2.50             11.49 
[1] "1.0 - 4.0 (2.5)"   "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NDUFAF4 WILD-TYPE"   "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "NDUFAF4 MUTATED" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
[1] "Remove cluster labels:" "NDUFAF4 MUTATED"       
clus
  NDUFAF4 MUTATED NDUFAF4 WILD-TYPE 
                2               118 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689        TCGA-AF-2691 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3726 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887        TCGA-AG-3892 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"NDUFAF4 WILD-TYPE" "NDUFAF4 WILD-TYPE" 
D176V2, continuous
D176V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF4 MUTATED      4    1
  NDUFAF4 WILD-TYPE  150   67
        clus
vv       NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  COLON                4               150
  RECTUM               1                67
D176V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NDUFAF4 MUTATED      2    3
  NDUFAF4 WILD-TYPE  105  114
        clus
vv       NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  FEMALE               2               105
  MALE                 3               114
D176V5, multiclass
                                clus
vv                               NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D176V6, multiclass
    clus
vv   NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               1               149
  T4               2                15
D176V7, multiclass
    clus
vv   NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  N0               4               130
  N1               0                44
  N2               1                45
D176V8, multiclass
     clus
vv    NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
D176V9, multiclass
     clus
vv    NDUFAF4 MUTATED NDUFAF4 WILD-TYPE
  I                 1                47
  II                3                79
  III               1                59
  IV                0                29

Clustering(177) Variable = SGCG MUTATION ANALYSIS
D177V1, survival
                sevent
clus2              0   1
  SGCG MUTATED     3   1
  SGCG WILD-TYPE 103  13
  SGCG MUTATED SGCG WILD-TYPE 
             4            116 
  SGCG MUTATED SGCG WILD-TYPE 
             1             13 
$`SGCG MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AF-2689 TCGA-AG-A002 
        1.02         4.01        15.85        20.94 

$`SGCG WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2691 
       39.95        18.02        40.93        16.31         0.95        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  SGCG MUTATED SGCG WILD-TYPE 
          1.02           0.92 
  SGCG MUTATED SGCG WILD-TYPE 
         20.94          72.07 
  SGCG MUTATED SGCG WILD-TYPE 
          9.93          10.95 
[1] "1.0 - 20.9 (9.9)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCG WILD-TYPE"   "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE"   "SGCG MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SGCG MUTATED" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" "SGCG WILD-TYPE" 
[1] "hr=" "2.7"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCG MUTATED      5    2
  SGCG WILD-TYPE  149   66
        clus
vv       SGCG MUTATED SGCG WILD-TYPE
  COLON             5            149
  RECTUM            2             66
D177V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCG MUTATED      4    3
  SGCG WILD-TYPE  103  114
        clus
vv       SGCG MUTATED SGCG WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D177V5, multiclass
                                clus
vv                               SGCG MUTATED SGCG WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D177V6, multiclass
    clus
vv   SGCG MUTATED SGCG WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            1             16
D177V7, multiclass
    clus
vv   SGCG MUTATED SGCG WILD-TYPE
  N0            4            130
  N1            0             44
  N2            3             43
D177V8, multiclass
     clus
vv    SGCG MUTATED SGCG WILD-TYPE
  M0             5            184
  M1             2             29
  M1A            0              1
D177V9, multiclass
     clus
vv    SGCG MUTATED SGCG WILD-TYPE
  I              2             46
  II             2             80
  III            1             59
  IV             1             28

Clustering(178) Variable = USP17L2 MUTATION ANALYSIS
D178V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    7  0
  USP17L2 WILD-TYPE 99 14
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               113 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                0                14 
$`USP17L2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3975 TCGA-AA-A010 TCGA-AA-A02W 
        9.14         1.02         0.99         0.99        20.98        40.96 
TCGA-AG-A002 
       20.94 

$`USP17L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
             0.99              0.92 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            40.96             72.07 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
             9.14             10.98 
[1] "1.0 - 41.0 (9.1)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D178V2, continuous
D178V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      7    1
  USP17L2 WILD-TYPE  147   67
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  COLON                7               147
  RECTUM               1                67
D178V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      3    5
  USP17L2 WILD-TYPE  104  112
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               3               104
  MALE                 5               112
D178V5, multiclass
                                clus
vv                               USP17L2 MUTATED USP17L2 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D178V6, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               1                16
D178V7, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  N0               8               126
  N1               0                44
  N2               0                46
D178V8, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D178V9, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  I                 3                45
  II                5                77
  III               0                60
  IV                0                29

Clustering(179) Variable = ZNF568 MUTATION ANALYSIS
D179V1, survival
                  sevent
clus2                0   1
  ZNF568 MUTATED     5   2
  ZNF568 WILD-TYPE 101  12
  ZNF568 MUTATED ZNF568 WILD-TYPE 
               7              113 
  ZNF568 MUTATED ZNF568 WILD-TYPE 
               2               12 
$`ZNF568 MUTATED`
TCGA-AA-3811 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01D TCGA-AG-3892 TCGA-AG-A002 
        0.99         4.01        20.98         0.99         1.02        20.94 
TCGA-AG-A026 
        1.94 

$`ZNF568 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ZNF568 MUTATED ZNF568 WILD-TYPE 
            0.99             0.92 
  ZNF568 MUTATED ZNF568 WILD-TYPE 
           20.98            72.07 
  ZNF568 MUTATED ZNF568 WILD-TYPE 
            1.94            12.00 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF568 MUTATED" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE"   "ZNF568 MUTATED" "ZNF568 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" "ZNF568 WILD-TYPE" 
[1] "hr=" "4.3"
D179V2, continuous
D179V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF568 MUTATED      6    3
  ZNF568 WILD-TYPE  148   65
        clus
vv       ZNF568 MUTATED ZNF568 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D179V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF568 MUTATED      5    4
  ZNF568 WILD-TYPE  102  113
        clus
vv       ZNF568 MUTATED ZNF568 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
D179V5, multiclass
                                clus
vv                               ZNF568 MUTATED ZNF568 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D179V6, multiclass
    clus
vv   ZNF568 MUTATED ZNF568 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              3               14
D179V7, multiclass
    clus
vv   ZNF568 MUTATED ZNF568 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              3               43
D179V8, multiclass
     clus
vv    ZNF568 MUTATED ZNF568 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D179V9, multiclass
     clus
vv    ZNF568 MUTATED ZNF568 WILD-TYPE
  I                2               46
  II               4               78
  III              3               57
  IV               0               29

Clustering(180) Variable = ELF3 MUTATION ANALYSIS
D180V1, survival
                sevent
clus2              0   1
  ELF3 MUTATED     3   0
  ELF3 WILD-TYPE 103  14
  ELF3 MUTATED ELF3 WILD-TYPE 
             3            117 
  ELF3 MUTATED ELF3 WILD-TYPE 
             0             14 
$`ELF3 MUTATED`
TCGA-A6-2678 TCGA-AG-3599 TCGA-AG-3892 
       14.37         0.99         1.02 

$`ELF3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ELF3 MUTATED ELF3 WILD-TYPE 
          0.99           0.92 
  ELF3 MUTATED ELF3 WILD-TYPE 
         14.37          72.07 
  ELF3 MUTATED ELF3 WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 14.4 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
[1] "hr="     "9200000"
D180V2, continuous
D180V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      3    3
  ELF3 WILD-TYPE  151   65
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  COLON             3            151
  RECTUM            3             65
D180V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      2    4
  ELF3 WILD-TYPE  105  113
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            2            105
  MALE              4            113
D180V5, multiclass
                                clus
vv                               ELF3 MUTATED ELF3 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D180V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            3            147
  T4            1             16
D180V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            4            130
  N1            1             43
  N2            1             45
D180V8, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D180V9, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  I              2             46
  II             2             80
  III            1             59
  IV             1             28

Clustering(181) Variable = MCF2 MUTATION ANALYSIS
D181V1, survival
                sevent
clus2              0   1
  MCF2 MUTATED     5   1
  MCF2 WILD-TYPE 101  13
  MCF2 MUTATED MCF2 WILD-TYPE 
             6            114 
  MCF2 MUTATED MCF2 WILD-TYPE 
             1             13 
$`MCF2 MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         1.02        18.02         4.01        20.98         1.02 

$`MCF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  MCF2 MUTATED MCF2 WILD-TYPE 
          0.99           0.92 
  MCF2 MUTATED MCF2 WILD-TYPE 
         20.98          72.07 
  MCF2 MUTATED MCF2 WILD-TYPE 
         2.515         11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
[1] "hr=" "2.1"
D181V2, continuous
D181V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      8    4
  MCF2 WILD-TYPE  146   64
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  COLON             8            146
  RECTUM            4             64
D181V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      7    5
  MCF2 WILD-TYPE  100  112
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  FEMALE            7            100
  MALE              5            112
D181V5, multiclass
                                clus
vv                               MCF2 MUTATED MCF2 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D181V6, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            4            146
  T4            3             14
D181V7, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  N0            8            126
  N1            3             41
  N2            1             45
D181V8, multiclass
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
D181V9, multiclass
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  I              4             44
  II             3             79
  III            3             57
  IV             1             28

Clustering(182) Variable = PRKD1 MUTATION ANALYSIS
D182V1, survival
                 sevent
clus2              0  1
  PRKD1 MUTATED    7  1
  PRKD1 WILD-TYPE 99 13
  PRKD1 MUTATED PRKD1 WILD-TYPE 
              8             112 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
              1              13 
$`PRKD1 MUTATED`
TCGA-AA-3710 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A02J TCGA-AG-3581 
        1.02         0.99         1.02        20.98         5.03         1.02 
TCGA-AG-A002 TCGA-AG-A036 
       20.94        72.07 

$`PRKD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       38.93        61.94        40.96        38.01 

  PRKD1 MUTATED PRKD1 WILD-TYPE 
           0.99            0.92 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
          72.07           70.03 
  PRKD1 MUTATED PRKD1 WILD-TYPE 
          3.025          11.490 
[1] "1.0 - 72.1 (3.0)"  "0.9 - 70.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRKD1 WILD-TYPE"   "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED"   "PRKD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRKD1 MUTATED" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE" "PRKD1 WILD-TYPE"   "PRKD1 MUTATED" 
[1] "hr=" "1"  
D182V2, continuous
D182V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKD1 MUTATED      8    4
  PRKD1 WILD-TYPE  146   64
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D182V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRKD1 MUTATED      6    6
  PRKD1 WILD-TYPE  101  111
        clus
vv       PRKD1 MUTATED PRKD1 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D182V5, multiclass
                                clus
vv                               PRKD1 MUTATED PRKD1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D182V6, multiclass
    clus
vv   PRKD1 MUTATED PRKD1 WILD-TYPE
  T1             0               9
  T2             5              42
  T3             6             144
  T4             1              16
D182V7, multiclass
    clus
vv   PRKD1 MUTATED PRKD1 WILD-TYPE
  N0            10             124
  N1             0              44
  N2             2              44
D182V8, multiclass
     clus
vv    PRKD1 MUTATED PRKD1 WILD-TYPE
  M0              9             180
  M1              2              29
  M1A             0               1
D182V9, multiclass
     clus
vv    PRKD1 MUTATED PRKD1 WILD-TYPE
  I               4              44
  II              4              78
  III             1              59
  IV              2              27

Clustering(183) Variable = MACC1 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  MACC1 MUTATED    7  0
  MACC1 WILD-TYPE 99 14
  MACC1 MUTATED MACC1 WILD-TYPE 
              7             113 
  MACC1 MUTATED MACC1 WILD-TYPE 
              0              14 
$`MACC1 MUTATED`
TCGA-AA-3837 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01Q TCGA-AG-3892 TCGA-AG-A002 
        1.02         1.02        20.98         1.02         1.02        20.94 
TCGA-AG-A00H 
       25.94 

$`MACC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MACC1 MUTATED MACC1 WILD-TYPE 
           1.02            0.92 
  MACC1 MUTATED MACC1 WILD-TYPE 
          25.94           72.07 
  MACC1 MUTATED MACC1 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 25.9 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MACC1 WILD-TYPE"   "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MACC1 MUTATED" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE"   "MACC1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" "MACC1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D183V2, continuous
D183V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      8    3
  MACC1 WILD-TYPE  146   65
        clus
vv       MACC1 MUTATED MACC1 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D183V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MACC1 MUTATED      7    4
  MACC1 WILD-TYPE  100  113
        clus
vv       MACC1 MUTATED MACC1 WILD-TYPE
  FEMALE             7             100
  MALE               4             113
D183V5, multiclass
                                clus
vv                               MACC1 MUTATED MACC1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D183V6, multiclass
    clus
vv   MACC1 MUTATED MACC1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             5             145
  T4             2              15
D183V7, multiclass
    clus
vv   MACC1 MUTATED MACC1 WILD-TYPE
  N0            10             124
  N1             0              44
  N2             1              45
D183V8, multiclass
     clus
vv    MACC1 MUTATED MACC1 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D183V9, multiclass
     clus
vv    MACC1 MUTATED MACC1 WILD-TYPE
  I               3              45
  II              6              76
  III             1              59
  IV              0              29

Clustering(184) Variable = OR5W2 MUTATION ANALYSIS
D184V1, survival
                 sevent
clus2               0   1
  OR5W2 MUTATED     6   1
  OR5W2 WILD-TYPE 100  13
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              7             113 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              1              13 
$`OR5W2 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01P TCGA-AG-3583 
        0.99         0.99        30.02        20.98        38.07         2.01 
TCGA-AG-A002 
       20.94 

$`OR5W2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         1.02         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR5W2 MUTATED OR5W2 WILD-TYPE 
           0.99            0.92 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          38.07           72.07 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          20.94           10.92 
[1] "1.0 - 38.1 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
[1] "hr=" "1.2"
D184V2, continuous
D184V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      5    2
  OR5W2 WILD-TYPE  149   66
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D184V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      3    4
  OR5W2 WILD-TYPE  104  113
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D184V5, multiclass
                                clus
vv                               OR5W2 MUTATED OR5W2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D184V6, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             2              15
D184V7, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D184V8, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D184V9, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  I               1              47
  II              4              78
  III             1              59
  IV              1              28

Clustering(185) Variable = NLRP5 MUTATION ANALYSIS
D185V1, survival
                 sevent
clus2               0   1
  NLRP5 MUTATED     5   1
  NLRP5 WILD-TYPE 101  13
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              6             114 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              1              13 
$`NLRP5 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R TCGA-AA-A02O TCGA-AG-A002 
        4.01        20.98        12.00        35.01         0.92        20.94 

$`NLRP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  NLRP5 MUTATED NLRP5 WILD-TYPE 
           0.92            0.92 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          35.01           72.07 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          16.47           10.77 
[1] "0.9 - 35.0 (16.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
[1] "hr=" "1.5"
D185V2, continuous
D185V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED     10    2
  NLRP5 WILD-TYPE  144   66
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D185V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      4    8
  NLRP5 WILD-TYPE  103  109
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  FEMALE             4             103
  MALE               8             109
D185V5, multiclass
                                clus
vv                               NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D185V6, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             7             143
  T4             2              15
D185V7, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  N0             9             125
  N1             0              44
  N2             3              43
D185V8, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  M0             10             179
  M1              2              29
  M1A             0               1
D185V9, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  I               3              45
  II              6              76
  III             1              59
  IV              2              27

Clustering(186) Variable = ARHGAP15 MUTATION ANALYSIS
D186V1, survival
                    sevent
clus2                  0   1
  ARHGAP15 MUTATED     4   1
  ARHGAP15 WILD-TYPE 102  13
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 5                115 
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
                 1                 13 
$`ARHGAP15 MUTATED`
TCGA-A6-2677 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-A02H TCGA-AG-3887 
       17.79         0.99         1.02         2.01         0.92 

$`ARHGAP15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
              0.92               0.92 
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
             17.79              72.07 
  ARHGAP15 MUTATED ARHGAP15 WILD-TYPE 
              1.02              12.00 
[1] "0.9 - 17.8 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE"   "ARHGAP15 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" "ARHGAP15 WILD-TYPE" 
[1] "hr=" "4.2"
D186V2, continuous
D186V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP15 MUTATED      5    2
  ARHGAP15 WILD-TYPE  149   66
        clus
vv       ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  COLON                 5                149
  RECTUM                2                 66
D186V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP15 MUTATED      4    3
  ARHGAP15 WILD-TYPE  103  114
        clus
vv       ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  FEMALE                4                103
  MALE                  3                114
D186V5, multiclass
                                clus
vv                               ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
D186V6, multiclass
    clus
vv   ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                6                144
  T4                1                 16
D186V7, multiclass
    clus
vv   ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  N0                2                132
  N1                2                 42
  N2                3                 43
D186V8, multiclass
     clus
vv    ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  M0                 5                184
  M1                 1                 30
  M1A                1                  0
D186V9, multiclass
     clus
vv    ARHGAP15 MUTATED ARHGAP15 WILD-TYPE
  I                  0                 48
  II                 2                 80
  III                3                 57
  IV                 2                 27

Clustering(187) Variable = MDGA2 MUTATION ANALYSIS
D187V1, survival
                 sevent
clus2               0   1
  MDGA2 MUTATED     5   1
  MDGA2 WILD-TYPE 101  13
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              6             114 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              1              13 
$`MDGA2 MUTATED`
TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AG-A002 TCGA-AG-A01W 
        0.99         0.99         1.02         4.01        20.94        70.03 

$`MDGA2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        12.00        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  MDGA2 MUTATED MDGA2 WILD-TYPE 
           0.99            0.92 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
          70.03           72.07 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 70.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
[1] "hr=" "1.4"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      8    2
  MDGA2 WILD-TYPE  146   66
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D187V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      5    5
  MDGA2 WILD-TYPE  102  112
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D187V5, multiclass
                                clus
vv                               MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D187V6, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             6             144
  T4             2              15
D187V7, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D187V8, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D187V9, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  I               1              47
  II              5              77
  III             2              58
  IV              1              28

Clustering(188) Variable = NAALAD2 MUTATION ANALYSIS
D188V1, survival
                   sevent
clus2                 0   1
  NAALAD2 MUTATED     5   1
  NAALAD2 WILD-TYPE 101  13
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                6               114 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                13 
$`NAALAD2 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99        18.02        18.02         4.01        20.98 

$`NAALAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
             0.99              0.92 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            20.98             72.07 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            16.36             10.77 
[1] "1.0 - 21.0 (16.4)" "0.9 - 72.1 (10.8)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
[1] "hr=" "1.4"
D188V2, continuous
D188V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED     11    0
  NAALAD2 WILD-TYPE  143   68
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON               11               143
  RECTUM               0                68
D188V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      8    3
  NAALAD2 WILD-TYPE   99  114
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               8                99
  MALE                 3               114
D188V5, multiclass
                                clus
vv                               NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                5                19
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D188V6, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               4               146
  T4               4                13
D188V7, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  N0               9               125
  N1               2                42
  N2               0                46
D188V8, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               10               179
  M1                1                30
  M1A               0                 1
D188V9, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  I                 2                46
  II                7                75
  III               1                59
  IV                1                28

Clustering(189) Variable = ZNF429 MUTATION ANALYSIS
D189V1, survival
                  sevent
clus2               0  1
  ZNF429 MUTATED    7  1
  ZNF429 WILD-TYPE 99 13
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               8              112 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               1               13 
$`ZNF429 MUTATED`
TCGA-AA-3685 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V 
        0.99         0.99         1.02         4.01        20.98        35.01 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`ZNF429 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       38.07         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ZNF429 MUTATED ZNF429 WILD-TYPE 
            0.99             0.92 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           35.01            72.07 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
[1] "hr=" "1.5"
D189V2, continuous
D189V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      7    2
  ZNF429 WILD-TYPE  147   66
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON               7              147
  RECTUM              2               66
D189V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      2    7
  ZNF429 WILD-TYPE  105  110
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  FEMALE              2              105
  MALE                7              110
D189V5, multiclass
                                clus
vv                               ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D189V6, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              2              148
  T4              2               15
D189V7, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              0               46
D189V8, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D189V9, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  I                4               44
  II               3               79
  III              1               59
  IV               0               29

Clustering(190) Variable = MAPK10 MUTATION ANALYSIS
D190V1, survival
                  sevent
clus2                0   1
  MAPK10 MUTATED     5   0
  MAPK10 WILD-TYPE 101  14
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               5              115 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
               0               14 
$`MAPK10 MUTATED`
TCGA-A6-2683 TCGA-AA-A00D TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       15.52        19.00        20.98         1.02        20.94 

$`MAPK10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  MAPK10 MUTATED MAPK10 WILD-TYPE 
            1.02             0.92 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
           20.98            72.07 
  MAPK10 MUTATED MAPK10 WILD-TYPE 
           19.00            10.62 
[1] "1.0 - 21.0 (19.0)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE"   "MAPK10 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAPK10 WILD-TYPE"   "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAPK10 MUTATED" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" "MAPK10 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D190V2, continuous
D190V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      4    4
  MAPK10 WILD-TYPE  150   64
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON               4              150
  RECTUM              4               64
D190V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAPK10 MUTATED      4    4
  MAPK10 WILD-TYPE  103  113
        clus
vv       MAPK10 MUTATED MAPK10 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D190V5, multiclass
                                clus
vv                               MAPK10 MUTATED MAPK10 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D190V6, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              2               15
D190V7, multiclass
    clus
vv   MAPK10 MUTATED MAPK10 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              2               44
D190V8, multiclass
     clus
vv    MAPK10 MUTATED MAPK10 WILD-TYPE
  M0               5              184
  M1               3               28
  M1A              0                1
D190V9, multiclass
     clus
vv    MAPK10 MUTATED MAPK10 WILD-TYPE
  I                3               45
  II               2               80
  III              0               60
  IV               3               26

Clustering(191) Variable = SLC16A7 MUTATION ANALYSIS
D191V1, survival
                   sevent
clus2                 0   1
  SLC16A7 MUTATED     5   1
  SLC16A7 WILD-TYPE 101  13
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                6               114 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                1                13 
$`SLC16A7 MUTATED`
TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         0.99         4.01        20.98         1.02 

$`SLC16A7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
             0.99              0.92 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
            20.98             72.07 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
            1.005            12.000 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
[1] "hr=" "3.2"
D191V2, continuous
D191V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      8    1
  SLC16A7 WILD-TYPE  146   67
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON                8               146
  RECTUM               1                67
D191V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      5    4
  SLC16A7 WILD-TYPE  102  113
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D191V5, multiclass
                                clus
vv                               SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D191V6, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               5               145
  T4               2                15
D191V7, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  N0               6               128
  N1               2                42
  N2               1                45
D191V8, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D191V9, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  I                 2                46
  II                4                78
  III               3                57
  IV                0                29

Clustering(192) Variable = ADAMTS12 MUTATION ANALYSIS
D192V1, survival
                    sevent
clus2                 0  1
  ADAMTS12 MUTATED   13  1
  ADAMTS12 WILD-TYPE 93 13
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                14                106 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                 1                 13 
$`ADAMTS12 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3975 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A017 TCGA-AG-3892 
       18.02         4.01         0.99        20.98        15.02         1.02 
TCGA-AG-A002 TCGA-AG-A014 
       20.94        15.91 

$`ADAMTS12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         1.02         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        17.03        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
              0.99               0.92 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
             20.98              72.07 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
              1.02              12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
[1] "hr=" "1"  
D192V2, continuous
D192V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     14    4
  ADAMTS12 WILD-TYPE  140   64
        clus
vv       ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  COLON                14                140
  RECTUM                4                 64
D192V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     12    6
  ADAMTS12 WILD-TYPE   95  111
        clus
vv       ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  FEMALE               12                 95
  MALE                  6                111
D192V5, multiclass
                                clus
vv                               ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  COLON ADENOCARCINOMA                         10                118
  COLON MUCINOUS ADENOCARCINOMA                 4                 20
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D192V6, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  T1                2                  7
  T2                4                 43
  T3                9                141
  T4                3                 14
D192V7, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  N0               12                122
  N1                4                 40
  N2                2                 44
D192V8, multiclass
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  M0                17                172
  M1                 1                 30
  M1A                0                  1
D192V9, multiclass
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  I                  6                 42
  II                 6                 76
  III                5                 55
  IV                 1                 28

Clustering(193) Variable = FREM2 MUTATION ANALYSIS
D193V1, survival
                 sevent
clus2              0  1
  FREM2 MUTATED   14  2
  FREM2 WILD-TYPE 92 12
  FREM2 MUTATED FREM2 WILD-TYPE 
             16             104 
  FREM2 MUTATED FREM2 WILD-TYPE 
              2              12 
$`FREM2 MUTATED`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3947 
       13.91        16.54        10.92         1.02         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01T 
        1.02        18.02        17.00        20.98        15.02        33.04 
TCGA-AA-A02O TCGA-AY-4071 TCGA-AG-3892 TCGA-AG-A002 
        0.92         0.95         1.02        20.94 

$`FREM2 WILD-TYPE`
TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       17.19        14.70        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        8.09         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02        35.01         1.02        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FREM2 MUTATED FREM2 WILD-TYPE 
           0.92            0.92 
  FREM2 MUTATED FREM2 WILD-TYPE 
          33.04           72.07 
  FREM2 MUTATED FREM2 WILD-TYPE 
         12.415          10.800 
[1] "0.9 - 33.0 (12.4)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
[1] "hr=" "1.5"
D193V2, continuous
D193V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     17    5
  FREM2 WILD-TYPE  137   63
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  COLON             17             137
  RECTUM             5              63
D193V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     17    6
  FREM2 WILD-TYPE   90  111
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  FEMALE            17              90
  MALE               6             111
D193V5, multiclass
                                clus
vv                               FREM2 MUTATED FREM2 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D193V6, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3            14             136
  T4             4              13
D193V7, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  N0            15             119
  N1             5              39
  N2             3              43
D193V8, multiclass
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
D193V9, multiclass
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  I               4              44
  II             10              72
  III             7              53
  IV              1              28

Clustering(194) Variable = SGCZ MUTATION ANALYSIS
D194V1, survival
                sevent
clus2              0   1
  SGCZ MUTATED     5   0
  SGCZ WILD-TYPE 101  14
  SGCZ MUTATED SGCZ WILD-TYPE 
             5            115 
  SGCZ MUTATED SGCZ WILD-TYPE 
             0             14 
$`SGCZ MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A010 TCGA-AG-3892 
        0.99         1.02        18.02        20.98         1.02 

$`SGCZ WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SGCZ MUTATED SGCZ WILD-TYPE 
          0.99           0.92 
  SGCZ MUTATED SGCZ WILD-TYPE 
         20.98          72.07 
  SGCZ MUTATED SGCZ WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
[1] "hr="     "2.6e+07"
D194V2, continuous
D194V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      6    1
  SGCZ WILD-TYPE  148   67
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  COLON             6            148
  RECTUM            1             67
D194V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      3    4
  SGCZ WILD-TYPE  104  113
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D194V5, multiclass
                                clus
vv                               SGCZ MUTATED SGCZ WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D194V6, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  T1            1              8
  T2            2             45
  T3            2            148
  T4            2             15
D194V7, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  N0            4            130
  N1            2             42
  N2            1             45
D194V8, multiclass
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  M0             4            185
  M1             1             30
  M1A            0              1
D194V9, multiclass
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  I              1             47
  II             1             81
  III            2             58
  IV             1             28

Clustering(195) Variable = MAGEC2 MUTATION ANALYSIS
D195V1, survival
                  sevent
clus2                0   1
  MAGEC2 MUTATED     2   1
  MAGEC2 WILD-TYPE 104  13
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               3              117 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               1               13 
$`MAGEC2 MUTATED`
TCGA-AA-3518 TCGA-AA-3818 TCGA-AG-A002 
        1.02         0.99        20.94 

$`MAGEC2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            0.99             0.92 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
           20.94            72.07 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
[1] "hr=" "4.9"
D195V2, continuous
D195V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      4    3
  MAGEC2 WILD-TYPE  150   65
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D195V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      6    1
  MAGEC2 WILD-TYPE  101  116
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              6              101
  MALE                1              116
D195V5, multiclass
                                clus
vv                               MAGEC2 MUTATED MAGEC2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D195V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              1               16
D195V7, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              1               45
D195V8, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D195V9, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  I                1               47
  II               5               77
  III              1               59
  IV               0               29

Clustering(196) Variable = PIK3R1 MUTATION ANALYSIS
D196V1, survival
                  sevent
clus2                0   1
  PIK3R1 MUTATED     5   0
  PIK3R1 WILD-TYPE 101  14
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               5              115 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
               0               14 
$`PIK3R1 MUTATED`
TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 
       20.98         1.02         1.02        20.94        49.94 

$`PIK3R1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         0.99         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            1.02             0.92 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           49.94            72.07 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 49.9 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D196V2, continuous
D196V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      5    4
  PIK3R1 WILD-TYPE  149   64
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON               5              149
  RECTUM              4               64
D196V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      7    2
  PIK3R1 WILD-TYPE  100  115
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE              7              100
  MALE                2              115
D196V5, multiclass
                                clus
vv                               PIK3R1 MUTATED PIK3R1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D196V6, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  T1              2                7
  T2              2               45
  T3              4              146
  T4              1               16
D196V7, multiclass
    clus
vv   PIK3R1 MUTATED PIK3R1 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              1               45
D196V8, multiclass
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D196V9, multiclass
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  I                4               44
  II               4               78
  III              1               59
  IV               0               29

Clustering(197) Variable = REG1A MUTATION ANALYSIS
D197V1, survival
                 sevent
clus2               0   1
  REG1A MUTATED     2   0
  REG1A WILD-TYPE 104  14
  REG1A MUTATED REG1A WILD-TYPE 
              2             118 
  REG1A MUTATED REG1A WILD-TYPE 
              0              14 
$`REG1A MUTATED`
TCGA-AA-A01R TCGA-AG-A002 
       35.01        20.94 

$`REG1A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  REG1A MUTATED REG1A WILD-TYPE 
          20.94            0.92 
  REG1A MUTATED REG1A WILD-TYPE 
          35.01           72.07 
  REG1A MUTATED REG1A WILD-TYPE 
         27.975          10.770 
[1] "20.9 - 35.0 (28.0)" "0.9 - 72.1 (10.8)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
[1] "Remove cluster labels:" "REG1A MUTATED"         
clus
  REG1A MUTATED REG1A WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" 
D197V2, continuous
D197V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      3    2
  REG1A WILD-TYPE  151   66
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  COLON              3             151
  RECTUM             2              66
D197V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      2    3
  REG1A WILD-TYPE  105  114
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  FEMALE             2             105
  MALE               3             114
D197V5, multiclass
                                clus
vv                               REG1A MUTATED REG1A WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D197V6, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             0              17
D197V7, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  N0             3             131
  N1             1              43
  N2             1              45
D197V8, multiclass
     clus
vv    REG1A MUTATED REG1A WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D197V9, multiclass
     clus
vv    REG1A MUTATED REG1A WILD-TYPE
  I               1              47
  II              2              80
  III             2              58
  IV              0              29

Clustering(198) Variable = OR10G9 MUTATION ANALYSIS
D198V1, survival
                  sevent
clus2                0   1
  OR10G9 MUTATED     4   1
  OR10G9 WILD-TYPE 102  13
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               5              115 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               1               13 
$`OR10G9 MUTATED`
TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-A017 TCGA-AA-A03F TCGA-AG-3892 
        1.02         0.99        15.02        18.02         1.02 

$`OR10G9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        20.98         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR10G9 MUTATED OR10G9 WILD-TYPE 
            0.99             0.92 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
           18.02            72.07 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
[1] "hr=" "2.9"
D198V2, continuous
D198V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    1
  OR10G9 WILD-TYPE  149   67
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D198V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    1
  OR10G9 WILD-TYPE  102  116
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              5              102
  MALE                1              116
D198V5, multiclass
                                clus
vv                               OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D198V6, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              3              147
  T4              1               16
D198V7, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              1               45
D198V8, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D198V9, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  I                2               46
  II               3               79
  III              1               59
  IV               0               29

Clustering(199) Variable = KCNQ3 MUTATION ANALYSIS
D199V1, survival
                 sevent
clus2               0   1
  KCNQ3 MUTATED     4   1
  KCNQ3 WILD-TYPE 102  13
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
              5             115 
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
              1              13 
$`KCNQ3 MUTATED`
TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00N TCGA-AG-A002 TCGA-AG-A01L 
        0.99         0.99         4.01        20.94        12.00 

$`KCNQ3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       15.91        13.02         1.02        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
           0.99            0.92 
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
          20.94           72.07 
  KCNQ3 MUTATED KCNQ3 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 20.9 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNQ3 WILD-TYPE"   "KCNQ3 MUTATED" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" "KCNQ3 WILD-TYPE" 
[1] "hr=" "2.7"
D199V2, continuous
D199V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ3 MUTATED     10    3
  KCNQ3 WILD-TYPE  144   65
        clus
vv       KCNQ3 MUTATED KCNQ3 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D199V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNQ3 MUTATED      7    6
  KCNQ3 WILD-TYPE  100  111
        clus
vv       KCNQ3 MUTATED KCNQ3 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D199V5, multiclass
                                clus
vv                               KCNQ3 MUTATED KCNQ3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D199V6, multiclass
    clus
vv   KCNQ3 MUTATED KCNQ3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             8             142
  T4             2              15
D199V7, multiclass
    clus
vv   KCNQ3 MUTATED KCNQ3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D199V8, multiclass
     clus
vv    KCNQ3 MUTATED KCNQ3 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D199V9, multiclass
     clus
vv    KCNQ3 MUTATED KCNQ3 WILD-TYPE
  I               3              45
  II              6              76
  III             2              58
  IV              2              27

Clustering(200) Variable = FNDC1 MUTATION ANALYSIS
D200V1, survival
                 sevent
clus2              0  1
  FNDC1 MUTATED    8  3
  FNDC1 WILD-TYPE 98 11
  FNDC1 MUTATED FNDC1 WILD-TYPE 
             11             109 
  FNDC1 MUTATED FNDC1 WILD-TYPE 
              3              11 
$`FNDC1 MUTATED`
TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A02J TCGA-AA-A03F TCGA-AG-A002 TCGA-AG-A032 TCGA-AG-A036 
        5.03        18.02        20.94        38.01        72.07 

$`FNDC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O 
       20.98        39.06        51.95        39.95         2.01         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X 
       40.96 

  FNDC1 MUTATED FNDC1 WILD-TYPE 
           0.99            0.92 
  FNDC1 MUTATED FNDC1 WILD-TYPE 
          72.07           70.03 
  FNDC1 MUTATED FNDC1 WILD-TYPE 
           5.03           10.98 
[1] "1.0 - 72.1 (5.0)"  "0.9 - 70.0 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED"   "FNDC1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED"   "FNDC1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FNDC1 WILD-TYPE"   "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FNDC1 MUTATED" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FNDC1 WILD-TYPE" "FNDC1 WILD-TYPE"   "FNDC1 MUTATED"   "FNDC1 MUTATED" 
[1] "hr=" "2.6"
D200V2, continuous
D200V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FNDC1 MUTATED     13    3
  FNDC1 WILD-TYPE  141   65
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D200V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FNDC1 MUTATED      7    9
  FNDC1 WILD-TYPE  100  108
        clus
vv       FNDC1 MUTATED FNDC1 WILD-TYPE
  FEMALE             7             100
  MALE               9             108
D200V5, multiclass
                                clus
vv                               FNDC1 MUTATED FNDC1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D200V6, multiclass
    clus
vv   FNDC1 MUTATED FNDC1 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             7             143
  T4             3              14
D200V7, multiclass
    clus
vv   FNDC1 MUTATED FNDC1 WILD-TYPE
  N0            11             123
  N1             1              43
  N2             4              42
D200V8, multiclass
     clus
vv    FNDC1 MUTATED FNDC1 WILD-TYPE
  M0             14             175
  M1              1              30
  M1A             0               1
D200V9, multiclass
     clus
vv    FNDC1 MUTATED FNDC1 WILD-TYPE
  I               4              44
  II              5              77
  III             5              55
  IV              1              28

Clustering(201) Variable = OR8B4 MUTATION ANALYSIS
D201V1, survival
                 sevent
clus2               0   1
  OR8B4 MUTATED     3   1
  OR8B4 WILD-TYPE 103  13
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              4             116 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              1              13 
$`OR8B4 MUTATED`
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A024 TCGA-AF-2692 
        0.99        20.98        39.06        13.55 

$`OR8B4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 
        1.02        33.04        35.01        26.01        20.98        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR8B4 MUTATED OR8B4 WILD-TYPE 
           0.99            0.92 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
          39.06           72.07 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
         17.265          10.770 
[1] "1.0 - 39.1 (17.3)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
[1] "hr=" "1.5"
D201V2, continuous
D201V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      5    0
  OR8B4 WILD-TYPE  149   68
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D201V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      4    2
  OR8B4 WILD-TYPE  103  115
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D201V5, multiclass
                                clus
vv                               OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D201V6, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D201V7, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
D201V8, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D201V9, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  I               1              47
  II              4              78
  III             1              59
  IV              0              29

Clustering(202) Variable = PCDHB16 MUTATION ANALYSIS
D202V1, survival
                   sevent
clus2                0  1
  PCDHB16 MUTATED    7  0
  PCDHB16 WILD-TYPE 99 14
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
                7               113 
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
                0                14 
$`PCDHB16 MUTATED`
TCGA-A6-2672 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A010 TCGA-AA-A01R 
       16.54         0.99         0.99        18.02        20.98        35.01 
TCGA-AG-3894 
        0.99 

$`PCDHB16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 
        0.95         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
             0.99              0.92 
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
            35.01             72.07 
  PCDHB16 MUTATED PCDHB16 WILD-TYPE 
            16.54             10.92 
[1] "1.0 - 35.0 (16.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE"   "PCDHB16 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" "PCDHB16 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D202V2, continuous
D202V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHB16 MUTATED      8    2
  PCDHB16 WILD-TYPE  146   66
        clus
vv       PCDHB16 MUTATED PCDHB16 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D202V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHB16 MUTATED      3    7
  PCDHB16 WILD-TYPE  104  110
        clus
vv       PCDHB16 MUTATED PCDHB16 WILD-TYPE
  FEMALE               3               104
  MALE                 7               110
D202V5, multiclass
                                clus
vv                               PCDHB16 MUTATED PCDHB16 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D202V6, multiclass
    clus
vv   PCDHB16 MUTATED PCDHB16 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               7               143
  T4               2                15
D202V7, multiclass
    clus
vv   PCDHB16 MUTATED PCDHB16 WILD-TYPE
  N0               7               127
  N1               1                43
  N2               2                44
D202V8, multiclass
     clus
vv    PCDHB16 MUTATED PCDHB16 WILD-TYPE
  M0                9               180
  M1                1                30
  M1A               0                 1
D202V9, multiclass
     clus
vv    PCDHB16 MUTATED PCDHB16 WILD-TYPE
  I                 1                47
  II                6                76
  III               2                58
  IV                1                28

Clustering(203) Variable = CHST4 MUTATION ANALYSIS
D203V1, survival
                 sevent
clus2               0   1
  CHST4 MUTATED     5   0
  CHST4 WILD-TYPE 101  14
  CHST4 MUTATED CHST4 WILD-TYPE 
              5             115 
  CHST4 MUTATED CHST4 WILD-TYPE 
              0              14 
$`CHST4 MUTATED`
TCGA-A6-2672 TCGA-AA-3679 TCGA-AA-3715 TCGA-AG-A002 TCGA-AG-A016 
       16.54         0.99         0.99        20.94         1.02 

$`CHST4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       15.91        13.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CHST4 MUTATED CHST4 WILD-TYPE 
           0.99            0.92 
  CHST4 MUTATED CHST4 WILD-TYPE 
          20.94           72.07 
  CHST4 MUTATED CHST4 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE"   "CHST4 MUTATED" "CHST4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "CHST4 MUTATED" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" "CHST4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D203V2, continuous
D203V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST4 MUTATED      5    2
  CHST4 WILD-TYPE  149   66
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D203V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST4 MUTATED      1    6
  CHST4 WILD-TYPE  106  111
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  FEMALE             1             106
  MALE               6             111
D203V5, multiclass
                                clus
vv                               CHST4 MUTATED CHST4 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D203V6, multiclass
    clus
vv   CHST4 MUTATED CHST4 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             0              17
D203V7, multiclass
    clus
vv   CHST4 MUTATED CHST4 WILD-TYPE
  N0             3             131
  N1             2              42
  N2             2              44
D203V8, multiclass
     clus
vv    CHST4 MUTATED CHST4 WILD-TYPE
  M0              5             184
  M1              2              29
  M1A             0               1
D203V9, multiclass
     clus
vv    CHST4 MUTATED CHST4 WILD-TYPE
  I               2              46
  II              1              81
  III             2              58
  IV              2              27

Clustering(204) Variable = ZEB2 MUTATION ANALYSIS
D204V1, survival
                sevent
clus2             0  1
  ZEB2 MUTATED    7  2
  ZEB2 WILD-TYPE 99 12
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             9            111 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             2             12 
$`ZEB2 MUTATED`
TCGA-A6-3810 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 
        8.09         1.02         0.99        34.03         4.01        20.98 
TCGA-AA-A01P TCGA-AG-A002 TCGA-AG-A014 
       38.07        20.94        15.91 

$`ZEB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZEB2 MUTATED ZEB2 WILD-TYPE 
          0.99           0.92 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
         38.07          72.07 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
         15.91          10.92 
[1] "1.0 - 38.1 (15.9)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
[1] "hr=" "2"  
D204V2, continuous
D204V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED     11    4
  ZEB2 WILD-TYPE  143   64
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D204V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      6    9
  ZEB2 WILD-TYPE  101  108
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
D204V5, multiclass
                                clus
vv                               ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D204V6, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            8            142
  T4            2             15
D204V7, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  N0           11            123
  N1            1             43
  N2            3             43
D204V8, multiclass
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  M0            14            175
  M1             1             30
  M1A            0              1
D204V9, multiclass
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  I              5             43
  II             6             76
  III            3             57
  IV             1             28

Clustering(205) Variable = CYP11B1 MUTATION ANALYSIS
D205V1, survival
                   sevent
clus2                 0   1
  CYP11B1 MUTATED     4   0
  CYP11B1 WILD-TYPE 102  14
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
                4               116 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
                0                14 
$`CYP11B1 MUTATED`
TCGA-AA-3715 TCGA-AG-3892 TCGA-AG-A011 TCGA-AG-A02N 
        0.99         1.02        17.03        61.94 

$`CYP11B1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
             0.99              0.92 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
            61.94             72.07 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
            9.025            10.950 
[1] "1.0 - 61.9 (9.0)"  "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D205V2, continuous
D205V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      5    4
  CYP11B1 WILD-TYPE  149   64
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  COLON                5               149
  RECTUM               4                64
D205V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      5    4
  CYP11B1 WILD-TYPE  102  113
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
D205V5, multiclass
                                clus
vv                               CYP11B1 MUTATED CYP11B1 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        4                53
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D205V6, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               6               144
  T4               0                17
D205V7, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  N0               8               126
  N1               1                43
  N2               0                46
D205V8, multiclass
     clus
vv    CYP11B1 MUTATED CYP11B1 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D205V9, multiclass
     clus
vv    CYP11B1 MUTATED CYP11B1 WILD-TYPE
  I                 3                45
  II                5                77
  III               1                59
  IV                0                29

Clustering(206) Variable = SPATA8 MUTATION ANALYSIS
D206V1, survival
                  sevent
clus2                0   1
  SPATA8 MUTATED     2   0
  SPATA8 WILD-TYPE 104  14
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              118 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               0               14 
$`SPATA8 MUTATED`
TCGA-AG-4001 TCGA-AG-A01W 
        1.02        70.03 

$`SPATA8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SPATA8 MUTATED SPATA8 WILD-TYPE 
            1.02             0.92 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
           70.03            72.07 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
          35.525           10.950 
[1] "1.0 - 70.0 (35.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D206V2, continuous
D206V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE  154   65
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON               0              154
  RECTUM              3               65
D206V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  104  117
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  FEMALE              3              104
  MALE                0              117
D206V5, multiclass
                                clus
vv                               SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D206V6, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              0               17
D206V7, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  N0              2              132
  N1              1               43
  N2              0               46
D206V8, multiclass
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
D206V9, multiclass
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  I                0               48
  II               2               80
  III              1               59
  IV               0               29

Clustering(207) Variable = AMY2A MUTATION ANALYSIS
D207V1, survival
                 sevent
clus2               0   1
  AMY2A MUTATED     3   0
  AMY2A WILD-TYPE 103  14
  AMY2A MUTATED AMY2A WILD-TYPE 
              3             117 
  AMY2A MUTATED AMY2A WILD-TYPE 
              0              14 
$`AMY2A MUTATED`
TCGA-AA-A010 TCGA-AA-A02W TCGA-AG-A002 
       20.98        40.96        20.94 

$`AMY2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  AMY2A MUTATED AMY2A WILD-TYPE 
          20.94            0.92 
  AMY2A MUTATED AMY2A WILD-TYPE 
          40.96           72.07 
  AMY2A MUTATED AMY2A WILD-TYPE 
          20.98           10.62 
[1] "20.9 - 41.0 (21.0)" "0.9 - 72.1 (10.6)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AMY2A WILD-TYPE"   "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AMY2A MUTATED" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" "AMY2A WILD-TYPE" 
[1] "hr="     "2.7e+07"
D207V2, continuous
D207V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMY2A MUTATED      3    2
  AMY2A WILD-TYPE  151   66
        clus
vv       AMY2A MUTATED AMY2A WILD-TYPE
  COLON              3             151
  RECTUM             2              66
D207V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AMY2A MUTATED      3    2
  AMY2A WILD-TYPE  104  115
        clus
vv       AMY2A MUTATED AMY2A WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D207V5, multiclass
                                clus
vv                               AMY2A MUTATED AMY2A WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D207V6, multiclass
    clus
vv   AMY2A MUTATED AMY2A WILD-TYPE
  T1             0               9
  T2             2              45
  T3             2             148
  T4             1              16
D207V7, multiclass
    clus
vv   AMY2A MUTATED AMY2A WILD-TYPE
  N0             5             129
  N1             0              44
  N2             0              46
D207V8, multiclass
     clus
vv    AMY2A MUTATED AMY2A WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D207V9, multiclass
     clus
vv    AMY2A MUTATED AMY2A WILD-TYPE
  I               2              46
  II              3              79
  III             0              60
  IV              0              29

Clustering(208) Variable = ZIM3 MUTATION ANALYSIS
D208V1, survival
                sevent
clus2              0   1
  ZIM3 MUTATED     6   1
  ZIM3 WILD-TYPE 100  13
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             7            113 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             1             13 
$`ZIM3 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-A002 TCGA-AG-A020 
        1.02        20.98         1.02         0.99        20.94        10.98 
TCGA-AG-A026 
        1.94 

$`ZIM3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.92         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ZIM3 MUTATED ZIM3 WILD-TYPE 
          0.99           0.92 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
         20.98          72.07 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
          1.94          12.00 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
[1] "hr=" "1.8"
D208V2, continuous
D208V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      4    5
  ZIM3 WILD-TYPE  150   63
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON             4            150
  RECTUM            5             63
D208V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      5    4
  ZIM3 WILD-TYPE  102  113
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  FEMALE            5            102
  MALE              4            113
D208V5, multiclass
                                clus
vv                               ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D208V6, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            4            146
  T4            2             15
D208V7, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  N0            6            128
  N1            3             41
  N2            0             46
D208V8, multiclass
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  M0             8            181
  M1             0             31
  M1A            0              1
D208V9, multiclass
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  I              2             46
  II             3             79
  III            3             57
  IV             0             29

Clustering(209) Variable = ANO4 MUTATION ANALYSIS
D209V1, survival
                sevent
clus2              0   1
  ANO4 MUTATED     5   2
  ANO4 WILD-TYPE 101  12
  ANO4 MUTATED ANO4 WILD-TYPE 
             7            113 
  ANO4 MUTATED ANO4 WILD-TYPE 
             2             12 
$`ANO4 MUTATED`
TCGA-A6-2676 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A01P TCGA-AF-2689 TCGA-AF-3913 
       14.70         0.99         1.02        38.07        15.85        10.39 
TCGA-AG-3583 
        2.01 

$`ANO4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31         0.95        10.62        13.55        12.72 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ANO4 MUTATED ANO4 WILD-TYPE 
          0.99           0.92 
  ANO4 MUTATED ANO4 WILD-TYPE 
         38.07          72.07 
  ANO4 MUTATED ANO4 WILD-TYPE 
         10.39          10.98 
[1] "1.0 - 38.1 (10.4)" "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE"   "ANO4 MUTATED" "ANO4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" "ANO4 WILD-TYPE" 
[1] "hr=" "3.3"
D209V2, continuous
D209V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANO4 MUTATED      7    4
  ANO4 WILD-TYPE  147   64
        clus
vv       ANO4 MUTATED ANO4 WILD-TYPE
  COLON             7            147
  RECTUM            4             64
D209V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANO4 MUTATED      6    5
  ANO4 WILD-TYPE  101  112
        clus
vv       ANO4 MUTATED ANO4 WILD-TYPE
  FEMALE            6            101
  MALE              5            112
D209V5, multiclass
                                clus
vv                               ANO4 MUTATED ANO4 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D209V6, multiclass
    clus
vv   ANO4 MUTATED ANO4 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            9            141
  T4            0             17
D209V7, multiclass
    clus
vv   ANO4 MUTATED ANO4 WILD-TYPE
  N0            4            130
  N1            4             40
  N2            3             43
D209V8, multiclass
     clus
vv    ANO4 MUTATED ANO4 WILD-TYPE
  M0             6            183
  M1             4             27
  M1A            0              1
D209V9, multiclass
     clus
vv    ANO4 MUTATED ANO4 WILD-TYPE
  I              0             48
  II             3             79
  III            3             57
  IV             2             27

Clustering(210) Variable = GALNT14 MUTATION ANALYSIS
D210V1, survival
                   sevent
clus2                 0   1
  GALNT14 MUTATED     3   1
  GALNT14 WILD-TYPE 103  13
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                4               116 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                1                13 
$`GALNT14 MUTATED`
TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 
        0.99        30.02         4.01        20.98 

$`GALNT14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  GALNT14 MUTATED GALNT14 WILD-TYPE 
             0.99              0.92 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
            30.02             72.07 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
           12.495            10.950 
[1] "1.0 - 30.0 (12.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
[1] "hr=" "2.5"
D210V2, continuous
D210V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      9    1
  GALNT14 WILD-TYPE  145   67
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON                9               145
  RECTUM               1                67
D210V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      6    4
  GALNT14 WILD-TYPE  101  113
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D210V5, multiclass
                                clus
vv                               GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D210V6, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  T1               0                 9
  T2               0                47
  T3               6               144
  T4               4                13
D210V7, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  N0               8               126
  N1               0                44
  N2               2                44
D210V8, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D210V9, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  I                 0                48
  II                8                74
  III               2                58
  IV                0                29

Clustering(211) Variable = HDAC9 MUTATION ANALYSIS
D211V1, survival
                 sevent
clus2               0   1
  HDAC9 MUTATED     5   1
  HDAC9 WILD-TYPE 101  13
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              6             114 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              1              13 
$`HDAC9 MUTATED`
TCGA-A6-3808 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3893 TCGA-AG-A02N 
        9.14         1.02         4.01        20.98         0.99        61.94 

$`HDAC9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  HDAC9 MUTATED HDAC9 WILD-TYPE 
           0.99            0.92 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
          61.94           72.07 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
          6.575          11.490 
[1] "1.0 - 61.9 (6.6)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
[1] "hr=" "1.3"
D211V2, continuous
D211V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      9    2
  HDAC9 WILD-TYPE  145   66
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  COLON              9             145
  RECTUM             2              66
D211V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      4    7
  HDAC9 WILD-TYPE  103  110
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  FEMALE             4             103
  MALE               7             110
D211V5, multiclass
                                clus
vv                               HDAC9 MUTATED HDAC9 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D211V6, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             8             142
  T4             2              15
D211V7, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             0              46
D211V8, multiclass
     clus
vv    HDAC9 MUTATED HDAC9 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D211V9, multiclass
     clus
vv    HDAC9 MUTATED HDAC9 WILD-TYPE
  I               0              48
  II              8              74
  III             1              59
  IV              1              28

Clustering(212) Variable = NMUR2 MUTATION ANALYSIS
D212V1, survival
                 sevent
clus2               0   1
  NMUR2 MUTATED     6   0
  NMUR2 WILD-TYPE 100  14
  NMUR2 MUTATED NMUR2 WILD-TYPE 
              6             114 
  NMUR2 MUTATED NMUR2 WILD-TYPE 
              0              14 
$`NMUR2 MUTATED`
TCGA-AA-3555 TCGA-AA-A00A TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-A02N 
        0.99        18.02        20.98        35.01         1.02        61.94 

$`NMUR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  NMUR2 MUTATED NMUR2 WILD-TYPE 
           0.99            0.92 
  NMUR2 MUTATED NMUR2 WILD-TYPE 
          61.94           72.07 
  NMUR2 MUTATED NMUR2 WILD-TYPE 
          19.50           10.77 
[1] "1.0 - 61.9 (19.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NMUR2 WILD-TYPE"   "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NMUR2 MUTATED" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" "NMUR2 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D212V2, continuous
D212V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NMUR2 MUTATED      6    3
  NMUR2 WILD-TYPE  148   65
        clus
vv       NMUR2 MUTATED NMUR2 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D212V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NMUR2 MUTATED      4    5
  NMUR2 WILD-TYPE  103  112
        clus
vv       NMUR2 MUTATED NMUR2 WILD-TYPE
  FEMALE             4             103
  MALE               5             112
D212V5, multiclass
                                clus
vv                               NMUR2 MUTATED NMUR2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D212V6, multiclass
    clus
vv   NMUR2 MUTATED NMUR2 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             6             144
  T4             2              15
D212V7, multiclass
    clus
vv   NMUR2 MUTATED NMUR2 WILD-TYPE
  N0             7             127
  N1             0              44
  N2             2              44
D212V8, multiclass
     clus
vv    NMUR2 MUTATED NMUR2 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D212V9, multiclass
     clus
vv    NMUR2 MUTATED NMUR2 WILD-TYPE
  I               1              47
  II              6              76
  III             1              59
  IV              1              28

Clustering(213) Variable = SCN9A MUTATION ANALYSIS
D213V1, survival
                 sevent
clus2               0   1
  SCN9A MUTATED     5   2
  SCN9A WILD-TYPE 101  12
  SCN9A MUTATED SCN9A WILD-TYPE 
              7             113 
  SCN9A MUTATED SCN9A WILD-TYPE 
              2              12 
$`SCN9A MUTATED`
TCGA-AA-3666 TCGA-AA-3844 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        1.02         0.92         4.01        20.98         1.02        20.94 
TCGA-AG-A01W 
       70.03 

$`SCN9A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  SCN9A MUTATED SCN9A WILD-TYPE 
           0.92            0.92 
  SCN9A MUTATED SCN9A WILD-TYPE 
          70.03           72.07 
  SCN9A MUTATED SCN9A WILD-TYPE 
           4.01           10.98 
[1] "0.9 - 70.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN9A MUTATED" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE"   "SCN9A MUTATED" "SCN9A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" "SCN9A WILD-TYPE" 
[1] "hr=" "2.5"
D213V2, continuous
D213V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN9A MUTATED      9    4
  SCN9A WILD-TYPE  145   64
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D213V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN9A MUTATED      7    6
  SCN9A WILD-TYPE  100  111
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D213V5, multiclass
                                clus
vv                               SCN9A MUTATED SCN9A WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D213V6, multiclass
    clus
vv   SCN9A MUTATED SCN9A WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             3              14
D213V7, multiclass
    clus
vv   SCN9A MUTATED SCN9A WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D213V8, multiclass
     clus
vv    SCN9A MUTATED SCN9A WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
D213V9, multiclass
     clus
vv    SCN9A MUTATED SCN9A WILD-TYPE
  I               4              44
  II              6              76
  III             2              58
  IV              1              28

Clustering(214) Variable = PCDH15 MUTATION ANALYSIS
D214V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED   13  0
  PCDH15 WILD-TYPE 93 14
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              13              107 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               0               14 
$`PCDH15 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3939 
       14.70         9.14         8.09         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A010 TCGA-AG-3892 
        0.99         1.02         1.02        18.02        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`PCDH15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.99             0.92 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           20.98            72.07 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D214V2, continuous
D214V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     17    3
  PCDH15 WILD-TYPE  137   65
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  COLON              17              137
  RECTUM              3               65
D214V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     10   10
  PCDH15 WILD-TYPE   97  107
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE             10               97
  MALE               10              107
D214V5, multiclass
                                clus
vv                               PCDH15 MUTATED PCDH15 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               7               17
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D214V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              1                8
  T2              3               44
  T3             13              137
  T4              2               15
D214V7, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0             13              121
  N1              6               38
  N2              1               45
D214V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  M0              18              171
  M1               1               30
  M1A              0                1
D214V9, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  I                2               46
  II              10               72
  III              6               54
  IV               1               28

Clustering(215) Variable = INHBA MUTATION ANALYSIS
D215V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    7  1
  INHBA WILD-TYPE 99 13
  INHBA MUTATED INHBA WILD-TYPE 
              8             112 
  INHBA MUTATED INHBA WILD-TYPE 
              1              13 
$`INHBA MUTATED`
TCGA-A6-3808 TCGA-AA-3949 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        9.14         0.99        34.03         4.01        20.98        35.01 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`INHBA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  INHBA MUTATED INHBA WILD-TYPE 
           0.99            0.92 
  INHBA MUTATED INHBA WILD-TYPE 
          35.01           72.07 
  INHBA MUTATED INHBA WILD-TYPE 
          15.04           10.95 
[1] "1.0 - 35.0 (15.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
[1] "hr=" "1.1"
D215V2, continuous
D215V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      7    2
  INHBA WILD-TYPE  147   66
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  COLON              7             147
  RECTUM             2              66
D215V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      3    6
  INHBA WILD-TYPE  104  111
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             3             104
  MALE               6             111
D215V5, multiclass
                                clus
vv                               INHBA MUTATED INHBA WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D215V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1               8
  T2             1              46
  T3             5             145
  T4             2              15
D215V7, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  N0             5             129
  N1             2              42
  N2             2              44
D215V8, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
D215V9, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               2              46
  II              3              79
  III             4              56
  IV              0              29

Clustering(216) Variable = SLC9A9 MUTATION ANALYSIS
D216V1, survival
                  sevent
clus2               0  1
  SLC9A9 MUTATED    8  1
  SLC9A9 WILD-TYPE 98 13
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
               9              111 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
               1               13 
$`SLC9A9 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AG-A002 
        1.02        35.01        20.94 

$`SLC9A9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
            0.99             0.92 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
           35.01            72.07 
  SLC9A9 MUTATED SLC9A9 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC9A9 WILD-TYPE"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "SLC9A9 MUTATED"   "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC9A9 MUTATED" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" "SLC9A9 WILD-TYPE" 
[1] "hr=" "1.3"
D216V2, continuous
D216V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC9A9 MUTATED     10    2
  SLC9A9 WILD-TYPE  144   66
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  COLON              10              144
  RECTUM              2               66
D216V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC9A9 MUTATED      6    6
  SLC9A9 WILD-TYPE  101  111
        clus
vv       SLC9A9 MUTATED SLC9A9 WILD-TYPE
  FEMALE              6              101
  MALE                6              111
D216V5, multiclass
                                clus
vv                               SLC9A9 MUTATED SLC9A9 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D216V6, multiclass
    clus
vv   SLC9A9 MUTATED SLC9A9 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              6              144
  T4              2               15
D216V7, multiclass
    clus
vv   SLC9A9 MUTATED SLC9A9 WILD-TYPE
  N0             10              124
  N1              1               43
  N2              1               45
D216V8, multiclass
     clus
vv    SLC9A9 MUTATED SLC9A9 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D216V9, multiclass
     clus
vv    SLC9A9 MUTATED SLC9A9 WILD-TYPE
  I                2               46
  II               7               75
  III              2               58
  IV               0               29

Clustering(217) Variable = TMBIM4 MUTATION ANALYSIS
D217V1, survival
                  sevent
clus2                0   1
  TMBIM4 MUTATED     2   0
  TMBIM4 WILD-TYPE 104  14
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              118 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               0               14 
$`TMBIM4 MUTATED`
TCGA-AA-3977 TCGA-AG-A00H 
        1.02        25.94 

$`TMBIM4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
            1.02             0.92 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
           25.94            72.07 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
           13.48            10.95 
[1] "1.0 - 25.9 (13.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00Y       TCGA-AG-A011 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D217V2, continuous
D217V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    1
  TMBIM4 WILD-TYPE  151   67
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D217V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      1    3
  TMBIM4 WILD-TYPE  106  114
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  FEMALE              1              106
  MALE                3              114
D217V5, multiclass
                                clus
vv                               TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D217V6, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              1              149
  T4              1               16
D217V7, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              0               46
D217V8, multiclass
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  M0               2              187
  M1               1               30
  M1A              0                1
D217V9, multiclass
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  I                1               47
  II               1               81
  III              0               60
  IV               1               28

Clustering(218) Variable = LILRB5 MUTATION ANALYSIS
D218V1, survival
                  sevent
clus2               0  1
  LILRB5 MUTATED    8  1
  LILRB5 WILD-TYPE 98 13
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               9              111 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
               1               13 
$`LILRB5 MUTATED`
TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3893 
        1.02         1.02         0.99         1.02        20.98         0.99 
TCGA-AG-A002 TCGA-AG-A020 TCGA-AG-A026 
       20.94        10.98         1.94 

$`LILRB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       12.00        70.03        63.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  LILRB5 MUTATED LILRB5 WILD-TYPE 
            0.99             0.92 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
           20.98            72.07 
  LILRB5 MUTATED LILRB5 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "LILRB5 MUTATED" "LILRB5 WILD-TYPE"   "LILRB5 MUTATED" "LILRB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" "LILRB5 WILD-TYPE" 
[1] "hr=" "1.6"
D218V2, continuous
D218V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB5 MUTATED      6    4
  LILRB5 WILD-TYPE  148   64
        clus
vv       LILRB5 MUTATED LILRB5 WILD-TYPE
  COLON               6              148
  RECTUM              4               64
D218V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LILRB5 MUTATED      5    5
  LILRB5 WILD-TYPE  102  112
        clus
vv       LILRB5 MUTATED LILRB5 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
D218V5, multiclass
                                clus
vv                               LILRB5 MUTATED LILRB5 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D218V6, multiclass
    clus
vv   LILRB5 MUTATED LILRB5 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              4              146
  T4              3               14
D218V7, multiclass
    clus
vv   LILRB5 MUTATED LILRB5 WILD-TYPE
  N0              7              127
  N1              3               41
  N2              0               46
D218V8, multiclass
     clus
vv    LILRB5 MUTATED LILRB5 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D218V9, multiclass
     clus
vv    LILRB5 MUTATED LILRB5 WILD-TYPE
  I                1               47
  II               5               77
  III              3               57
  IV               0               29

Clustering(219) Variable = CYTL1 MUTATION ANALYSIS
D219V1, survival
                 sevent
clus2               0   1
  CYTL1 MUTATED     2   0
  CYTL1 WILD-TYPE 104  14
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2             118 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              0              14 
$`CYTL1 MUTATED`
TCGA-A6-2670 TCGA-AA-A010 
       13.91        20.98 

$`CYTL1 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  CYTL1 MUTATED CYTL1 WILD-TYPE 
          13.91            0.92 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
          20.98           72.07 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
         17.445          10.770 
[1] "13.9 - 21.0 (17.4)" "0.9 - 72.1 (10.8)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2             118 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
D219V2, continuous
D219V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  150   68
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON              4             150
  RECTUM             0              68
D219V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      2    2
  CYTL1 WILD-TYPE  105  115
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  FEMALE             2             105
  MALE               2             115
D219V5, multiclass
                                clus
vv                               CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D219V6, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             2             148
  T4             1              16
D219V7, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             0              46
D219V8, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  M0              4             185
  M1              0              31
  M1A             0               1
D219V9, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  I               1              47
  II              3              79
  III             0              60
  IV              0              29

Clustering(220) Variable = SPAG17 MUTATION ANALYSIS
D220V1, survival
                  sevent
clus2               0  1
  SPAG17 MUTATED    9  2
  SPAG17 WILD-TYPE 97 12
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              11              109 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
               2               12 
$`SPAG17 MUTATED`
TCGA-A6-2677 TCGA-AA-3811 TCGA-AA-3854 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
       17.79         0.99         1.02         1.02         1.02         4.01 
TCGA-AA-A010 TCGA-AA-A01G TCGA-AF-3913 TCGA-AG-3726 TCGA-AG-A002 
       20.98        12.00        10.39         1.02        20.94 

$`SPAG17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       10.62        13.55        12.72         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SPAG17 MUTATED SPAG17 WILD-TYPE 
            0.99             0.92 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
           20.98            72.07 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE"   "SPAG17 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPAG17 WILD-TYPE"   "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SPAG17 MUTATED" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" "SPAG17 WILD-TYPE" 
[1] "hr=" "2.4"
D220V2, continuous
D220V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG17 MUTATED     13    4
  SPAG17 WILD-TYPE  141   64
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  COLON              13              141
  RECTUM              4               64
D220V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPAG17 MUTATED      9    8
  SPAG17 WILD-TYPE   98  109
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  FEMALE              9               98
  MALE                8              109
D220V5, multiclass
                                clus
vv                               SPAG17 MUTATED SPAG17 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D220V6, multiclass
    clus
vv   SPAG17 MUTATED SPAG17 WILD-TYPE
  T1              0                9
  T2              5               42
  T3              9              141
  T4              3               14
D220V7, multiclass
    clus
vv   SPAG17 MUTATED SPAG17 WILD-TYPE
  N0             10              124
  N1              3               41
  N2              4               42
D220V8, multiclass
     clus
vv    SPAG17 MUTATED SPAG17 WILD-TYPE
  M0              13              176
  M1               3               28
  M1A              0                1
D220V9, multiclass
     clus
vv    SPAG17 MUTATED SPAG17 WILD-TYPE
  I                3               45
  II               6               76
  III              4               56
  IV               2               27

Clustering(221) Variable = HMCN1 MUTATION ANALYSIS
D221V1, survival
                 sevent
clus2              0  1
  HMCN1 MUTATED   16  2
  HMCN1 WILD-TYPE 90 12
  HMCN1 MUTATED HMCN1 WILD-TYPE 
             18             102 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
              2              12 
$`HMCN1 MUTATED`
TCGA-A6-2674 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
       17.19         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 TCGA-AA-A03J 
       30.02        18.02         4.01        20.98        39.06        40.93 
TCGA-AG-3583 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A02X 
        2.01         0.99         1.02        20.94        61.94        40.96 

$`HMCN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00K 
        1.02         0.99         0.99        19.00        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 
        5.03         0.92        40.96        39.95        18.02        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         1.02         0.95 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AG-A036 
       10.98        49.94         1.94        38.93        38.01        72.07 

  HMCN1 MUTATED HMCN1 WILD-TYPE 
           0.99            0.92 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
          61.94           72.07 
  HMCN1 MUTATED HMCN1 WILD-TYPE 
         17.605          10.505 
[1] "1.0 - 61.9 (17.6)" "0.9 - 72.1 (10.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE"   "HMCN1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HMCN1 WILD-TYPE"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "HMCN1 MUTATED"   "HMCN1 MUTATED" "HMCN1 WILD-TYPE" "HMCN1 WILD-TYPE" 
[1] "hr=" "1.6"
D221V2, continuous
D221V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     22    8
  HMCN1 WILD-TYPE  132   60
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON             22             132
  RECTUM             8              60
D221V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HMCN1 MUTATED     10   20
  HMCN1 WILD-TYPE   97   97
        clus
vv       HMCN1 MUTATED HMCN1 WILD-TYPE
  FEMALE            10              97
  MALE              20              97
D221V5, multiclass
                                clus
vv                               HMCN1 MUTATED HMCN1 WILD-TYPE
  COLON ADENOCARCINOMA                      15             113
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D221V6, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  T1             1               8
  T2             6              41
  T3            19             131
  T4             4              13
D221V7, multiclass
    clus
vv   HMCN1 MUTATED HMCN1 WILD-TYPE
  N0            21             113
  N1             4              40
  N2             5              41
D221V8, multiclass
     clus
vv    HMCN1 MUTATED HMCN1 WILD-TYPE
  M0             26             163
  M1              3              28
  M1A             0               1
D221V9, multiclass
     clus
vv    HMCN1 MUTATED HMCN1 WILD-TYPE
  I               6              42
  II             14              68
  III             6              54
  IV              2              27

Clustering(222) Variable = LEPREL1 MUTATION ANALYSIS
D222V1, survival
                   sevent
clus2                0  1
  LEPREL1 MUTATED    7  1
  LEPREL1 WILD-TYPE 99 13
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
                8               112 
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
                1                13 
$`LEPREL1 MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3846 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N 
       14.70         1.02         0.99         1.02        30.02         4.01 
TCGA-AA-A010 TCGA-AG-A002 
       20.98        20.94 

$`LEPREL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
             0.99              0.92 
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
            30.02             72.07 
  LEPREL1 MUTATED LEPREL1 WILD-TYPE 
            9.355            10.950 
[1] "1.0 - 30.0 (9.4)"  "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"LEPREL1 WILD-TYPE"   "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "LEPREL1 MUTATED" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" "LEPREL1 WILD-TYPE" 
[1] "hr=" "1.3"
D222V2, continuous
D222V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LEPREL1 MUTATED      8    2
  LEPREL1 WILD-TYPE  146   66
        clus
vv       LEPREL1 MUTATED LEPREL1 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D222V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  LEPREL1 MUTATED      5    5
  LEPREL1 WILD-TYPE  102  112
        clus
vv       LEPREL1 MUTATED LEPREL1 WILD-TYPE
  FEMALE               5               102
  MALE                 5               112
D222V5, multiclass
                                clus
vv                               LEPREL1 MUTATED LEPREL1 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D222V6, multiclass
    clus
vv   LEPREL1 MUTATED LEPREL1 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               2                15
D222V7, multiclass
    clus
vv   LEPREL1 MUTATED LEPREL1 WILD-TYPE
  N0              10               124
  N1               0                44
  N2               0                46
D222V8, multiclass
     clus
vv    LEPREL1 MUTATED LEPREL1 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D222V9, multiclass
     clus
vv    LEPREL1 MUTATED LEPREL1 WILD-TYPE
  I                 2                46
  II                7                75
  III               0                60
  IV                0                29

Clustering(223) Variable = SLC44A5 MUTATION ANALYSIS
D223V1, survival
                   sevent
clus2                 0   1
  SLC44A5 MUTATED     5   1
  SLC44A5 WILD-TYPE 101  13
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                6               114 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                1                13 
$`SLC44A5 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-A00J TCGA-AF-2691 TCGA-AG-4001 TCGA-AG-A002 
        1.02         0.99        18.02        10.62         1.02        20.94 

$`SLC44A5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 
       18.02        40.93        16.31         0.95        15.85        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
             0.99              0.92 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
            20.94             72.07 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
             5.82             11.49 
[1] "1.0 - 20.9 (5.8)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
[1] "hr=" "2"  
D223V2, continuous
D223V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      6    3
  SLC44A5 WILD-TYPE  148   65
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  COLON                6               148
  RECTUM               3                65
D223V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      3    6
  SLC44A5 WILD-TYPE  104  111
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  FEMALE               3               104
  MALE                 6               111
D223V5, multiclass
                                clus
vv                               SLC44A5 MUTATED SLC44A5 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D223V6, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  T1               1                 8
  T2               3                44
  T3               4               146
  T4               1                16
D223V7, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               0                46
D223V8, multiclass
     clus
vv    SLC44A5 MUTATED SLC44A5 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D223V9, multiclass
     clus
vv    SLC44A5 MUTATED SLC44A5 WILD-TYPE
  I                 4                44
  II                3                79
  III               2                58
  IV                0                29

Clustering(224) Variable = DCHS2 MUTATION ANALYSIS
D224V1, survival
                 sevent
clus2              0  1
  DCHS2 MUTATED   12  3
  DCHS2 WILD-TYPE 94 11
  DCHS2 MUTATED DCHS2 WILD-TYPE 
             15             105 
  DCHS2 MUTATED DCHS2 WILD-TYPE 
              3              11 
$`DCHS2 MUTATED`
TCGA-AA-3555 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         1.02         0.99         0.99         1.02         4.01 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A03F TCGA-AG-3892 
        0.99        20.98        38.07        35.01        18.02         1.02 
TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A00Y 
        1.02        20.94        23.01 

$`DCHS2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        39.95        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DCHS2 MUTATED DCHS2 WILD-TYPE 
           0.99            0.92 
  DCHS2 MUTATED DCHS2 WILD-TYPE 
          38.07           72.07 
  DCHS2 MUTATED DCHS2 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED"   "DCHS2 MUTATED"   "DCHS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE"   "DCHS2 MUTATED" "DCHS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "DCHS2 MUTATED" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" "DCHS2 WILD-TYPE" 
[1] "hr=" "2.6"
D224V2, continuous
D224V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCHS2 MUTATED     18    5
  DCHS2 WILD-TYPE  136   63
        clus
vv       DCHS2 MUTATED DCHS2 WILD-TYPE
  COLON             18             136
  RECTUM             5              63
D224V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCHS2 MUTATED     13   10
  DCHS2 WILD-TYPE   94  107
        clus
vv       DCHS2 MUTATED DCHS2 WILD-TYPE
  FEMALE            13              94
  MALE              10             107
D224V5, multiclass
                                clus
vv                               DCHS2 MUTATED DCHS2 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              7              17
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D224V6, multiclass
    clus
vv   DCHS2 MUTATED DCHS2 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            13             137
  T4             6              11
D224V7, multiclass
    clus
vv   DCHS2 MUTATED DCHS2 WILD-TYPE
  N0            16             118
  N1             3              41
  N2             4              42
D224V8, multiclass
     clus
vv    DCHS2 MUTATED DCHS2 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             1               0
D224V9, multiclass
     clus
vv    DCHS2 MUTATED DCHS2 WILD-TYPE
  I               3              45
  II             12              70
  III             5              55
  IV              2              27

Clustering(225) Variable = ADCY2 MUTATION ANALYSIS
D225V1, survival
                 sevent
clus2              0  1
  ADCY2 MUTATED   11  0
  ADCY2 WILD-TYPE 95 14
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             11             109 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
              0              14 
$`ADCY2 MUTATED`
TCGA-A6-2674 TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 
       17.19        15.52         0.99         0.99         0.99         1.02 
TCGA-AA-A00J TCGA-AA-A010 TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A014 
       18.02        20.98         1.02        20.94        15.91 

$`ADCY2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        14.70        17.79        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ADCY2 MUTATED ADCY2 WILD-TYPE 
           0.99            0.92 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
          20.98           72.07 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
          15.52           10.92 
[1] "1.0 - 21.0 (15.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D225V2, continuous
D225V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED     11    3
  ADCY2 WILD-TYPE  143   65
        clus
vv       ADCY2 MUTATED ADCY2 WILD-TYPE
  COLON             11             143
  RECTUM             3              65
D225V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED      7    7
  ADCY2 WILD-TYPE  100  110
        clus
vv       ADCY2 MUTATED ADCY2 WILD-TYPE
  FEMALE             7             100
  MALE               7             110
D225V5, multiclass
                                clus
vv                               ADCY2 MUTATED ADCY2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D225V6, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             5              12
D225V7, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             2              44
D225V8, multiclass
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  M0             10             179
  M1              3              28
  M1A             0               1
D225V9, multiclass
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  I               3              45
  II              5              77
  III             2              58
  IV              2              27

Clustering(226) Variable = MAP2K3 MUTATION ANALYSIS
D226V1, survival
                  sevent
clus2                0   1
  MAP2K3 MUTATED     3   1
  MAP2K3 WILD-TYPE 103  13
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
               4              116 
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
               1               13 
$`MAP2K3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AF-3913 TCGA-AG-A002 
        1.02         1.02        10.39        20.94 

$`MAP2K3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       10.62        13.55        12.72         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
            1.02             0.92 
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
           20.94            72.07 
  MAP2K3 MUTATED MAP2K3 WILD-TYPE 
           5.705           11.490 
[1] "1.0 - 20.9 (5.7)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE"   "MAP2K3 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "MAP2K3 MUTATED" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" "MAP2K3 WILD-TYPE" 
[1] "hr=" "3"  
D226V2, continuous
D226V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K3 MUTATED      2    4
  MAP2K3 WILD-TYPE  152   64
        clus
vv       MAP2K3 MUTATED MAP2K3 WILD-TYPE
  COLON               2              152
  RECTUM              4               64
D226V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K3 MUTATED      2    4
  MAP2K3 WILD-TYPE  105  113
        clus
vv       MAP2K3 MUTATED MAP2K3 WILD-TYPE
  FEMALE              2              105
  MALE                4              113
D226V5, multiclass
                                clus
vv                               MAP2K3 MUTATED MAP2K3 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D226V6, multiclass
    clus
vv   MAP2K3 MUTATED MAP2K3 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              0               17
D226V7, multiclass
    clus
vv   MAP2K3 MUTATED MAP2K3 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              1               45
D226V8, multiclass
     clus
vv    MAP2K3 MUTATED MAP2K3 WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
D226V9, multiclass
     clus
vv    MAP2K3 MUTATED MAP2K3 WILD-TYPE
  I                1               47
  II               2               80
  III              1               59
  IV               0               29

Clustering(227) Variable = TNR MUTATION ANALYSIS
D227V1, survival
               sevent
clus2            0  1
  TNR MUTATED    9  1
  TNR WILD-TYPE 97 13
  TNR MUTATED TNR WILD-TYPE 
           10           110 
  TNR MUTATED TNR WILD-TYPE 
            1            13 
$`TNR MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N 
        1.02         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A01I TCGA-AA-A01Q TCGA-AG-A002 TCGA-AG-A036 
       12.00         1.02        20.94        72.07 

$`TNR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
        0.99        13.02        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  TNR MUTATED TNR WILD-TYPE 
         0.99          0.92 
  TNR MUTATED TNR WILD-TYPE 
        72.07         70.03 
  TNR MUTATED TNR WILD-TYPE 
         1.02         12.00 
[1] "1.0 - 72.1 (1.0)"  "0.9 - 70.0 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" 
[1] "hr=" "1.1"
D227V2, continuous
D227V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     15    2
  TNR WILD-TYPE  139   66
        clus
vv       TNR MUTATED TNR WILD-TYPE
  COLON           15           139
  RECTUM           2            66
D227V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED      6   11
  TNR WILD-TYPE  101  106
        clus
vv       TNR MUTATED TNR WILD-TYPE
  FEMALE           6           101
  MALE            11           106
D227V5, multiclass
                                clus
vv                               TNR MUTATED TNR WILD-TYPE
  COLON ADENOCARCINOMA                    11           117
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D227V6, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  T1           0             9
  T2           6            41
  T3           8           142
  T4           3            14
D227V7, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  N0          15           119
  N1           1            43
  N2           1            45
D227V8, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  M0           15           174
  M1            1            30
  M1A           0             1
D227V9, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  I             5            43
  II            9            73
  III           1            59
  IV            1            28

Clustering(228) Variable = PXDNL MUTATION ANALYSIS
D228V1, survival
                 sevent
clus2               0   1
  PXDNL MUTATED     6   1
  PXDNL WILD-TYPE 100  13
  PXDNL MUTATED PXDNL WILD-TYPE 
              7             113 
  PXDNL MUTATED PXDNL WILD-TYPE 
              1              13 
$`PXDNL MUTATED`
TCGA-AA-3710 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-A00O TCGA-AA-A01P TCGA-AG-3887 
        1.02         0.99         1.02        27.02        38.07         0.92 
TCGA-AG-A002 
       20.94 

$`PXDNL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PXDNL MUTATED PXDNL WILD-TYPE 
           0.92            0.92 
  PXDNL MUTATED PXDNL WILD-TYPE 
          38.07           72.07 
  PXDNL MUTATED PXDNL WILD-TYPE 
           1.02           10.98 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" "PXDNL WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE"   "PXDNL MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PXDNL MUTATED" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" "PXDNL WILD-TYPE" 
[1] "hr=" "1.6"
D228V2, continuous
D228V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PXDNL MUTATED      8    4
  PXDNL WILD-TYPE  146   64
        clus
vv       PXDNL MUTATED PXDNL WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D228V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PXDNL MUTATED      9    3
  PXDNL WILD-TYPE   98  114
        clus
vv       PXDNL MUTATED PXDNL WILD-TYPE
  FEMALE             9              98
  MALE               3             114
D228V5, multiclass
                                clus
vv                               PXDNL MUTATED PXDNL WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D228V6, multiclass
    clus
vv   PXDNL MUTATED PXDNL WILD-TYPE
  T1             1               8
  T2             2              45
  T3             9             141
  T4             0              17
D228V7, multiclass
    clus
vv   PXDNL MUTATED PXDNL WILD-TYPE
  N0             8             126
  N1             3              41
  N2             1              45
D228V8, multiclass
     clus
vv    PXDNL MUTATED PXDNL WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D228V9, multiclass
     clus
vv    PXDNL MUTATED PXDNL WILD-TYPE
  I               3              45
  II              5              77
  III             4              56
  IV              0              29

Clustering(229) Variable = ZMYM6 MUTATION ANALYSIS
D229V1, survival
                 sevent
clus2               0   1
  ZMYM6 MUTATED     3   2
  ZMYM6 WILD-TYPE 103  12
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              5             115 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              2              12 
$`ZMYM6 MUTATED`
TCGA-AA-3846 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        0.99        18.02         4.01        20.98        18.02 

$`ZMYM6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        39.95        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
           0.99            0.92 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
          20.98           72.07 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
          18.02           10.92 
[1] "1.0 - 21.0 (18.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
[1] "hr=" "3.9"
D229V2, continuous
D229V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM6 MUTATED      9    1
  ZMYM6 WILD-TYPE  145   67
        clus
vv       ZMYM6 MUTATED ZMYM6 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D229V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM6 MUTATED      6    4
  ZMYM6 WILD-TYPE  101  113
        clus
vv       ZMYM6 MUTATED ZMYM6 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D229V5, multiclass
                                clus
vv                               ZMYM6 MUTATED ZMYM6 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D229V6, multiclass
    clus
vv   ZMYM6 MUTATED ZMYM6 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             8             142
  T4             2              15
D229V7, multiclass
    clus
vv   ZMYM6 MUTATED ZMYM6 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             1              45
D229V8, multiclass
     clus
vv    ZMYM6 MUTATED ZMYM6 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D229V9, multiclass
     clus
vv    ZMYM6 MUTATED ZMYM6 WILD-TYPE
  I               0              48
  II              8              74
  III             1              59
  IV              1              28

Clustering(230) Variable = SAT1 MUTATION ANALYSIS
D230V1, survival
                sevent
clus2              0   1
  SAT1 MUTATED     2   0
  SAT1 WILD-TYPE 104  14
  SAT1 MUTATED SAT1 WILD-TYPE 
             2            118 
  SAT1 MUTATED SAT1 WILD-TYPE 
             0             14 
$`SAT1 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 
        0.99         0.99 

$`SAT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99           0.92 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          72.07 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
[1] "Remove cluster labels:" "SAT1 MUTATED"          
clus
  SAT1 MUTATED SAT1 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3818 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952     TCGA-AA-3966 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
D230V2, continuous
D230V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  150   68
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  COLON             4            150
  RECTUM            0             68
D230V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  103  117
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  FEMALE            4            103
  MALE              0            117
D230V5, multiclass
                                clus
vv                               SAT1 MUTATED SAT1 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D230V6, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            3            147
  T4            0             17
D230V7, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  N0            2            132
  N1            1             43
  N2            1             45
D230V8, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
D230V9, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  I              1             47
  II             1             81
  III            2             58
  IV             0             29

Clustering(231) Variable = ATP6V0D2 MUTATION ANALYSIS
D231V1, survival
                    sevent
clus2                  0   1
  ATP6V0D2 MUTATED     6   1
  ATP6V0D2 WILD-TYPE 100  13
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 7                113 
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
                 1                 13 
$`ATP6V0D2 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         1.02         0.99         1.02         1.02         4.01 
TCGA-AG-A002 
       20.94 

$`ATP6V0D2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
              0.99               0.92 
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
             20.94              72.07 
  ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE 
              1.02              12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ATP6V0D2 WILD-TYPE"   "ATP6V0D2 MUTATED" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" "ATP6V0D2 WILD-TYPE" 
[1] "hr=" "2.7"
D231V2, continuous
D231V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ATP6V0D2 MUTATED      6    2
  ATP6V0D2 WILD-TYPE  148   66
        clus
vv       ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  COLON                 6                148
  RECTUM                2                 66
D231V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ATP6V0D2 MUTATED      3    5
  ATP6V0D2 WILD-TYPE  104  112
        clus
vv       ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  FEMALE                3                104
  MALE                  5                112
D231V5, multiclass
                                clus
vv                               ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D231V6, multiclass
    clus
vv   ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                5                145
  T4                1                 16
D231V7, multiclass
    clus
vv   ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  N0                8                126
  N1                0                 44
  N2                0                 46
D231V8, multiclass
     clus
vv    ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
D231V9, multiclass
     clus
vv    ATP6V0D2 MUTATED ATP6V0D2 WILD-TYPE
  I                  1                 47
  II                 6                 76
  III                0                 60
  IV                 0                 29

Clustering(232) Variable = STON1-GTF2A1L MUTATION ANALYSIS
D232V1, survival
                         sevent
clus2                      0  1
  STON1-GTF2A1L MUTATED    7  1
  STON1-GTF2A1L WILD-TYPE 99 13
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                      8                     112 
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                      1                      13 
$`STON1-GTF2A1L MUTATED`
TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99         0.99         4.01        21.99        20.98        15.02 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`STON1-GTF2A1L WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                   0.99                    0.92 
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                  21.99                   72.07 
  STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE 
                  9.515                  10.950 
[1] "1.0 - 22.0 (9.5)"  "0.9 - 72.1 (10.9)"
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2670              TCGA-A6-2672              TCGA-A6-2674 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2676              TCGA-A6-2677              TCGA-A6-2678 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-2683              TCGA-A6-3807              TCGA-A6-3808 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-A6-3810              TCGA-AA-3518              TCGA-AA-3526 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3555              TCGA-AA-3562              TCGA-AA-3666 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3679              TCGA-AA-3685              TCGA-AA-3710 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3715              TCGA-AA-3811              TCGA-AA-3818 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3837              TCGA-AA-3842              TCGA-AA-3844 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3846              TCGA-AA-3848              TCGA-AA-3854 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3877              TCGA-AA-3939              TCGA-AA-3941 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3947              TCGA-AA-3949              TCGA-AA-3952 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3966              TCGA-AA-3975              TCGA-AA-3977 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-3986              TCGA-AA-A004              TCGA-AA-A00A 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00D              TCGA-AA-A00E              TCGA-AA-A00F 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00J              TCGA-AA-A00K              TCGA-AA-A00L 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00N              TCGA-AA-A00O              TCGA-AA-A00Q 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00R              TCGA-AA-A00U              TCGA-AA-A00W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A00Z              TCGA-AA-A010              TCGA-AA-A017 
  "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED"   "STON1-GTF2A1L MUTATED" 
             TCGA-AA-A01D              TCGA-AA-A01F              TCGA-AA-A01G 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01I              TCGA-AA-A01K              TCGA-AA-A01P 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Q              TCGA-AA-A01R              TCGA-AA-A01S 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01T              TCGA-AA-A01V              TCGA-AA-A01X 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A01Z              TCGA-AA-A024              TCGA-AA-A029 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02F              TCGA-AA-A02H              TCGA-AA-A02J 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A02O              TCGA-AA-A02W              TCGA-AA-A02Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AA-A03F              TCGA-AA-A03J              TCGA-AY-4070 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AY-4071              TCGA-AF-2689              TCGA-AF-2691 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AF-2692              TCGA-AF-3400              TCGA-AF-3913 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3581              TCGA-AG-3582              TCGA-AG-3583 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3587              TCGA-AG-3599              TCGA-AG-3726 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3727              TCGA-AG-3878              TCGA-AG-3887 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3892              TCGA-AG-3893              TCGA-AG-3894 
  "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-3999              TCGA-AG-4001              TCGA-AG-4007 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-4008              TCGA-AG-A002              TCGA-AG-A008 
"STON1-GTF2A1L WILD-TYPE"   "STON1-GTF2A1L MUTATED" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A00C              TCGA-AG-A00H              TCGA-AG-A00Y 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A011              TCGA-AG-A014              TCGA-AG-A015 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A016              TCGA-AG-A01L              TCGA-AG-A01W 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A01Y              TCGA-AG-A020              TCGA-AG-A025 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A026              TCGA-AG-A02G              TCGA-AG-A02N 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
             TCGA-AG-A02X              TCGA-AG-A032              TCGA-AG-A036 
"STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" "STON1-GTF2A1L WILD-TYPE" 
[1] "hr=" "1.3"
D232V2, continuous
D232V3, binary
[1] "tbl2"
                         cls
clus                      [,1] [,2]
  STON1-GTF2A1L MUTATED      9    3
  STON1-GTF2A1L WILD-TYPE  145   65
        clus
vv       STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  COLON                      9                     145
  RECTUM                     3                      65
D232V4, binary
[1] "tbl2"
                         cls
clus                      [,1] [,2]
  STON1-GTF2A1L MUTATED      9    3
  STON1-GTF2A1L WILD-TYPE   98  114
        clus
vv       STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  FEMALE                     9                      98
  MALE                       3                     114
D232V5, multiclass
                                clus
vv                               STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  COLON ADENOCARCINOMA                               6                     122
  COLON MUCINOUS ADENOCARCINOMA                      3                      21
  RECTAL ADENOCARCINOMA                              3                      54
  RECTAL MUCINOUS ADENOCARCINOMA                     0                       8
D232V6, multiclass
    clus
vv   STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  T1                     1                       8
  T2                     1                      46
  T3                     5                     145
  T4                     5                      12
D232V7, multiclass
    clus
vv   STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  N0                     8                     126
  N1                     2                      42
  N2                     2                      44
D232V8, multiclass
     clus
vv    STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  M0                     10                     179
  M1                      2                      29
  M1A                     0                       1
D232V9, multiclass
     clus
vv    STON1-GTF2A1L MUTATED STON1-GTF2A1L WILD-TYPE
  I                       2                      46
  II                      6                      76
  III                     2                      58
  IV                      2                      27

Clustering(233) Variable = CACNG7 MUTATION ANALYSIS
D233V1, survival
                  sevent
clus2                0   1
  CACNG7 MUTATED     4   0
  CACNG7 WILD-TYPE 102  14
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               4              116 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               0               14 
$`CACNG7 MUTATED`
TCGA-AA-3949 TCGA-AG-4008 TCGA-AG-A01W TCGA-AG-A01Y 
        0.99         1.02        70.03        63.98 

$`CACNG7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CACNG7 MUTATED CACNG7 WILD-TYPE 
            0.99             0.92 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
           70.03            72.07 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
           32.50            10.95 
[1] "1.0 - 70.0 (32.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D233V2, continuous
D233V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      3    3
  CACNG7 WILD-TYPE  151   65
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON               3              151
  RECTUM              3               65
D233V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      4    2
  CACNG7 WILD-TYPE  103  115
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
D233V5, multiclass
                                clus
vv                               CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D233V6, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              0               17
D233V7, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D233V8, multiclass
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D233V9, multiclass
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  I                1               47
  II               4               78
  III              1               59
  IV               0               29

Clustering(234) Variable = ZNF479 MUTATION ANALYSIS
D234V1, survival
                  sevent
clus2                0   1
  ZNF479 MUTATED     5   1
  ZNF479 WILD-TYPE 101  13
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               6              114 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
               1               13 
$`ZNF479 MUTATED`
TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         0.99         4.01        20.98         1.02        20.94 

$`ZNF479 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF479 MUTATED ZNF479 WILD-TYPE 
            0.99             0.92 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
           20.98            72.07 
  ZNF479 MUTATED ZNF479 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF479 WILD-TYPE"   "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF479 MUTATED" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" "ZNF479 WILD-TYPE" 
[1] "hr=" "2.2"
D234V2, continuous
D234V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF479 MUTATED      6    2
  ZNF479 WILD-TYPE  148   66
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D234V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF479 MUTATED      4    4
  ZNF479 WILD-TYPE  103  113
        clus
vv       ZNF479 MUTATED ZNF479 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D234V5, multiclass
                                clus
vv                               ZNF479 MUTATED ZNF479 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D234V6, multiclass
    clus
vv   ZNF479 MUTATED ZNF479 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              4              146
  T4              2               15
D234V7, multiclass
    clus
vv   ZNF479 MUTATED ZNF479 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              0               46
D234V8, multiclass
     clus
vv    ZNF479 MUTATED ZNF479 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D234V9, multiclass
     clus
vv    ZNF479 MUTATED ZNF479 WILD-TYPE
  I                2               46
  II               6               76
  III              0               60
  IV               0               29

Clustering(235) Variable = ITK MUTATION ANALYSIS
D235V1, survival
               sevent
clus2            0  1
  ITK MUTATED    7  2
  ITK WILD-TYPE 99 12
  ITK MUTATED ITK WILD-TYPE 
            9           111 
  ITK MUTATED ITK WILD-TYPE 
            2            12 
$`ITK MUTATED`
TCGA-A6-2672 TCGA-AA-3846 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A01I TCGA-AA-A01P 
       16.54         0.99         0.99         4.01        12.00        38.07 
TCGA-AA-A01R TCGA-AG-3894 TCGA-AG-A002 
       35.01         0.99        20.94 

$`ITK WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ITK MUTATED ITK WILD-TYPE 
         0.99          0.92 
  ITK MUTATED ITK WILD-TYPE 
        38.07         72.07 
  ITK MUTATED ITK WILD-TYPE 
        12.00         10.92 
[1] "1.0 - 38.1 (12.0)" "0.9 - 72.1 (10.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ITK WILD-TYPE" "ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE"   "ITK MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ITK WILD-TYPE"   "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ITK MUTATED" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" "ITK WILD-TYPE" 
[1] "hr=" "2.3"
D235V2, continuous
D235V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ITK MUTATED      8    2
  ITK WILD-TYPE  146   66
        clus
vv       ITK MUTATED ITK WILD-TYPE
  COLON            8           146
  RECTUM           2            66
D235V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ITK MUTATED      5    5
  ITK WILD-TYPE  102  112
        clus
vv       ITK MUTATED ITK WILD-TYPE
  FEMALE           5           102
  MALE             5           112
D235V5, multiclass
                                clus
vv                               ITK MUTATED ITK WILD-TYPE
  COLON ADENOCARCINOMA                     5           123
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D235V6, multiclass
    clus
vv   ITK MUTATED ITK WILD-TYPE
  T1           0             9
  T2           2            45
  T3           6           144
  T4           2            15
D235V7, multiclass
    clus
vv   ITK MUTATED ITK WILD-TYPE
  N0           7           127
  N1           2            42
  N2           1            45
D235V8, multiclass
     clus
vv    ITK MUTATED ITK WILD-TYPE
  M0           10           179
  M1            0            31
  M1A           0             1
D235V9, multiclass
     clus
vv    ITK MUTATED ITK WILD-TYPE
  I             2            46
  II            5            77
  III           3            57
  IV            0            29

Clustering(236) Variable = CLEC18C MUTATION ANALYSIS
D236V1, survival
                   sevent
clus2                 0   1
  CLEC18C MUTATED     4   0
  CLEC18C WILD-TYPE 102  14
  CLEC18C MUTATED CLEC18C WILD-TYPE 
                4               116 
  CLEC18C MUTATED CLEC18C WILD-TYPE 
                0                14 
$`CLEC18C MUTATED`
TCGA-AA-3811 TCGA-AA-3941 TCGA-AA-A01R TCGA-AG-A025 
        0.99         1.02        35.01        49.94 

$`CLEC18C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CLEC18C MUTATED CLEC18C WILD-TYPE 
             0.99              0.92 
  CLEC18C MUTATED CLEC18C WILD-TYPE 
            49.94             72.07 
  CLEC18C MUTATED CLEC18C WILD-TYPE 
           18.015            10.950 
[1] "1.0 - 49.9 (18.0)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE"   "CLEC18C MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE"   "CLEC18C MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE"   "CLEC18C MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CLEC18C WILD-TYPE"   "CLEC18C MUTATED" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" "CLEC18C WILD-TYPE" 
[1] "hr="     "2.6e+07"
D236V2, continuous
D236V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC18C MUTATED      3    2
  CLEC18C WILD-TYPE  151   66
        clus
vv       CLEC18C MUTATED CLEC18C WILD-TYPE
  COLON                3               151
  RECTUM               2                66
D236V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC18C MUTATED      4    1
  CLEC18C WILD-TYPE  103  116
        clus
vv       CLEC18C MUTATED CLEC18C WILD-TYPE
  FEMALE               4               103
  MALE                 1               116
D236V5, multiclass
                                clus
vv                               CLEC18C MUTATED CLEC18C WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D236V6, multiclass
    clus
vv   CLEC18C MUTATED CLEC18C WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               2               148
  T4               1                16
D236V7, multiclass
    clus
vv   CLEC18C MUTATED CLEC18C WILD-TYPE
  N0               2               132
  N1               1                43
  N2               2                44
D236V8, multiclass
     clus
vv    CLEC18C MUTATED CLEC18C WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               1                 0
D236V9, multiclass
     clus
vv    CLEC18C MUTATED CLEC18C WILD-TYPE
  I                 2                46
  II                0                82
  III               2                58
  IV                1                28

Clustering(237) Variable = NRG1 MUTATION ANALYSIS
D237V1, survival
                sevent
clus2             0  1
  NRG1 MUTATED    9  0
  NRG1 WILD-TYPE 97 14
  NRG1 MUTATED NRG1 WILD-TYPE 
             9            111 
  NRG1 MUTATED NRG1 WILD-TYPE 
             0             14 
$`NRG1 MUTATED`
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O 
        1.02        30.02        20.98         1.02        35.01         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y 
        1.02        20.94        23.01 

$`NRG1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        38.07         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  NRG1 MUTATED NRG1 WILD-TYPE 
          0.92           0.92 
  NRG1 MUTATED NRG1 WILD-TYPE 
         35.01          72.07 
  NRG1 MUTATED NRG1 WILD-TYPE 
         20.94          10.92 
[1] "0.9 - 35.0 (20.9)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE"   "NRG1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "NRG1 MUTATED"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRG1 WILD-TYPE"   "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NRG1 MUTATED" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" "NRG1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D237V2, continuous
D237V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      8    5
  NRG1 WILD-TYPE  146   63
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  COLON             8            146
  RECTUM            5             63
D237V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG1 MUTATED      4    9
  NRG1 WILD-TYPE  103  108
        clus
vv       NRG1 MUTATED NRG1 WILD-TYPE
  FEMALE            4            103
  MALE              9            108
D237V5, multiclass
                                clus
vv                               NRG1 MUTATED NRG1 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D237V6, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  T1            1              8
  T2            3             44
  T3            8            142
  T4            1             16
D237V7, multiclass
    clus
vv   NRG1 MUTATED NRG1 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            2             44
D237V8, multiclass
     clus
vv    NRG1 MUTATED NRG1 WILD-TYPE
  M0            11            178
  M1             1             30
  M1A            0              1
D237V9, multiclass
     clus
vv    NRG1 MUTATED NRG1 WILD-TYPE
  I              3             45
  II             5             77
  III            3             57
  IV             1             28

Clustering(238) Variable = TECTA MUTATION ANALYSIS
D238V1, survival
                 sevent
clus2              0  1
  TECTA MUTATED   12  1
  TECTA WILD-TYPE 94 13
  TECTA MUTATED TECTA WILD-TYPE 
             13             107 
  TECTA MUTATED TECTA WILD-TYPE 
              1              13 
$`TECTA MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3947 
       14.70         0.99         0.99         0.99         0.92         0.99 
TCGA-AA-A004 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A01X TCGA-AF-3400 TCGA-AG-3893 
       13.94        18.02         4.01        26.01        12.72         0.99 
TCGA-AG-A002 
       20.94 

$`TECTA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
        0.99        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  TECTA MUTATED TECTA WILD-TYPE 
           0.92            0.92 
  TECTA MUTATED TECTA WILD-TYPE 
          26.01           72.07 
  TECTA MUTATED TECTA WILD-TYPE 
           4.01           10.98 
[1] "0.9 - 26.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
[1] "hr=" "1"  
D238V2, continuous
D238V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECTA MUTATED     17    4
  TECTA WILD-TYPE  137   64
        clus
vv       TECTA MUTATED TECTA WILD-TYPE
  COLON             17             137
  RECTUM             4              64
D238V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECTA MUTATED     10   11
  TECTA WILD-TYPE   97  106
        clus
vv       TECTA MUTATED TECTA WILD-TYPE
  FEMALE            10              97
  MALE              11             106
D238V5, multiclass
                                clus
vv                               TECTA MUTATED TECTA WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D238V6, multiclass
    clus
vv   TECTA MUTATED TECTA WILD-TYPE
  T1             0               9
  T2             3              44
  T3            13             137
  T4             4              13
D238V7, multiclass
    clus
vv   TECTA MUTATED TECTA WILD-TYPE
  N0            11             123
  N1             6              38
  N2             4              42
D238V8, multiclass
     clus
vv    TECTA MUTATED TECTA WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
D238V9, multiclass
     clus
vv    TECTA MUTATED TECTA WILD-TYPE
  I               1              47
  II             10              72
  III             9              51
  IV              1              28

Clustering(239) Variable = ARL2BP MUTATION ANALYSIS
D239V1, survival
                  sevent
clus2                0   1
  ARL2BP MUTATED     3   0
  ARL2BP WILD-TYPE 103  14
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               3              117 
  ARL2BP MUTATED ARL2BP WILD-TYPE 
               0               14 
$`ARL2BP MUTATED`
TCGA-AA-3710 TCGA-AG-A002 TCGA-AG-A02X 
        1.02        20.94        40.96 

$`ARL2BP WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
       61.94        38.01        72.07 

  ARL2BP MUTATED ARL2BP WILD-TYPE 
            1.02             0.92 
  ARL2BP MUTATED ARL2BP WILD-TYPE 
           40.96            72.07 
  ARL2BP MUTATED ARL2BP WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 41.0 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARL2BP WILD-TYPE"   "ARL2BP MUTATED" "ARL2BP WILD-TYPE" "ARL2BP WILD-TYPE" 
[1] "hr="     "2.6e+07"
D239V2, continuous
D239V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARL2BP MUTATED      3    2
  ARL2BP WILD-TYPE  151   66
        clus
vv       ARL2BP MUTATED ARL2BP WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D239V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARL2BP MUTATED      2    3
  ARL2BP WILD-TYPE  105  114
        clus
vv       ARL2BP MUTATED ARL2BP WILD-TYPE
  FEMALE              2              105
  MALE                3              114
D239V5, multiclass
                                clus
vv                               ARL2BP MUTATED ARL2BP WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D239V6, multiclass
    clus
vv   ARL2BP MUTATED ARL2BP WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              0               17
D239V7, multiclass
    clus
vv   ARL2BP MUTATED ARL2BP WILD-TYPE
  N0              4              130
  N1              0               44
  N2              1               45
D239V8, multiclass
     clus
vv    ARL2BP MUTATED ARL2BP WILD-TYPE
  M0               5              184
  M1               0               31
  M1A              0                1
D239V9, multiclass
     clus
vv    ARL2BP MUTATED ARL2BP WILD-TYPE
  I                3               45
  II               1               81
  III              1               59
  IV               0               29

Clustering(240) Variable = DPYD MUTATION ANALYSIS
D240V1, survival
                sevent
clus2              0   1
  DPYD MUTATED     5   2
  DPYD WILD-TYPE 101  12
  DPYD MUTATED DPYD WILD-TYPE 
             7            113 
  DPYD MUTATED DPYD WILD-TYPE 
             2             12 
$`DPYD MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-A00N TCGA-AA-A03F TCGA-AF-2692 TCGA-AG-A002 
       14.70         1.02         4.01        18.02        13.55        20.94 
TCGA-AG-A025 
       49.94 

$`DPYD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 
       40.93        16.31         0.95        15.85        10.62        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 
        1.02        12.00        70.03        63.98        10.98         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  DPYD MUTATED DPYD WILD-TYPE 
          1.02           0.92 
  DPYD MUTATED DPYD WILD-TYPE 
         49.94          72.07 
  DPYD MUTATED DPYD WILD-TYPE 
         14.70          10.62 
[1] "1.0 - 49.9 (14.7)" "0.9 - 72.1 (10.6)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE"   "DPYD MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPYD WILD-TYPE"   "DPYD MUTATED" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" "DPYD WILD-TYPE" 
[1] "hr=" "2"  
D240V2, continuous
D240V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED      7    4
  DPYD WILD-TYPE  147   64
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  COLON             7            147
  RECTUM            4             64
D240V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPYD MUTATED     10    2
  DPYD WILD-TYPE   97  115
        clus
vv       DPYD MUTATED DPYD WILD-TYPE
  FEMALE           10             97
  MALE              2            115
D240V5, multiclass
                                clus
vv                               DPYD MUTATED DPYD WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D240V6, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  T1            1              8
  T2            1             46
  T3            8            142
  T4            1             16
D240V7, multiclass
    clus
vv   DPYD MUTATED DPYD WILD-TYPE
  N0            8            126
  N1            2             42
  N2            2             44
D240V8, multiclass
     clus
vv    DPYD MUTATED DPYD WILD-TYPE
  M0            12            177
  M1             0             31
  M1A            0              1
D240V9, multiclass
     clus
vv    DPYD MUTATED DPYD WILD-TYPE
  I              2             46
  II             6             76
  III            4             56
  IV             0             29

Clustering(241) Variable = GFRA1 MUTATION ANALYSIS
D241V1, survival
                 sevent
clus2               0   1
  GFRA1 MUTATED     6   0
  GFRA1 WILD-TYPE 100  14
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              6             114 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
              0              14 
$`GFRA1 MUTATED`
TCGA-AA-3518 TCGA-AA-3947 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A014 
        1.02         0.99         1.02        20.94        13.91        15.91 

$`GFRA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
        1.02         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  GFRA1 MUTATED GFRA1 WILD-TYPE 
           0.99            0.92 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
          20.94           72.07 
  GFRA1 MUTATED GFRA1 WILD-TYPE 
          7.465          10.950 
[1] "1.0 - 20.9 (7.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GFRA1 MUTATED"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE"   "GFRA1 MUTATED" "GFRA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" "GFRA1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D241V2, continuous
D241V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      3    5
  GFRA1 WILD-TYPE  151   63
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON              3             151
  RECTUM             5              63
D241V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GFRA1 MUTATED      6    2
  GFRA1 WILD-TYPE  101  115
        clus
vv       GFRA1 MUTATED GFRA1 WILD-TYPE
  FEMALE             6             101
  MALE               2             115
D241V5, multiclass
                                clus
vv                               GFRA1 MUTATED GFRA1 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             2               6
D241V6, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             3             147
  T4             1              16
D241V7, multiclass
    clus
vv   GFRA1 MUTATED GFRA1 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
D241V8, multiclass
     clus
vv    GFRA1 MUTATED GFRA1 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
D241V9, multiclass
     clus
vv    GFRA1 MUTATED GFRA1 WILD-TYPE
  I               4              44
  II              3              79
  III             1              59
  IV              0              29

Clustering(242) Variable = MYO1B MUTATION ANALYSIS
D242V1, survival
                 sevent
clus2              0  1
  MYO1B MUTATED    7  0
  MYO1B WILD-TYPE 99 14
  MYO1B MUTATED MYO1B WILD-TYPE 
              7             113 
  MYO1B MUTATED MYO1B WILD-TYPE 
              0              14 
$`MYO1B MUTATED`
TCGA-AA-3685 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00A TCGA-AG-3892 TCGA-AG-A002 
        0.99         0.99         1.02        18.02         1.02        20.94 
TCGA-AG-A02N 
       61.94 

$`MYO1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  MYO1B MUTATED MYO1B WILD-TYPE 
           0.99            0.92 
  MYO1B MUTATED MYO1B WILD-TYPE 
          61.94           72.07 
  MYO1B MUTATED MYO1B WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 61.9 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
[1] "hr="     "7.3e+07"
D242V2, continuous
D242V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      9    4
  MYO1B WILD-TYPE  145   64
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D242V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      7    6
  MYO1B WILD-TYPE  100  111
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D242V5, multiclass
                                clus
vv                               MYO1B MUTATED MYO1B WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D242V6, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
D242V7, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
D242V8, multiclass
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
D242V9, multiclass
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  I               3              45
  II              6              76
  III             3              57
  IV              0              29

Clustering(243) Variable = OR2M2 MUTATION ANALYSIS
D243V1, survival
                 sevent
clus2               0   1
  OR2M2 MUTATED     3   2
  OR2M2 WILD-TYPE 103  12
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              5             115 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2              12 
$`OR2M2 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02F TCGA-AY-4071 
        1.02         4.01        20.98        39.95         0.95 

$`OR2M2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR2M2 MUTATED OR2M2 WILD-TYPE 
           0.95            0.92 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
          39.95           72.07 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
           4.01           10.98 
[1] "0.9 - 40.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
[1] "hr=" "3.2"
D243V2, continuous
D243V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    0
  OR2M2 WILD-TYPE  149   68
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D243V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    1
  OR2M2 WILD-TYPE  102  116
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  FEMALE             5             102
  MALE               1             116
D243V5, multiclass
                                clus
vv                               OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D243V6, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             3             147
  T4             2              15
D243V7, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
D243V8, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  M0              3             186
  M1              2              29
  M1A             0               1
D243V9, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  I               1              47
  II              3              79
  III             0              60
  IV              2              27

Clustering(244) Variable = RSPO2 MUTATION ANALYSIS
D244V1, survival
                 sevent
clus2               0   1
  RSPO2 MUTATED     2   1
  RSPO2 WILD-TYPE 104  13
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              3             117 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
              1              13 
$`RSPO2 MUTATED`
TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-A026 
        0.99        20.98         1.94 

$`RSPO2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  RSPO2 MUTATED RSPO2 WILD-TYPE 
           0.99            0.92 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
          20.98           72.07 
  RSPO2 MUTATED RSPO2 WILD-TYPE 
           1.94           10.98 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RSPO2 MUTATED" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE"   "RSPO2 MUTATED" "RSPO2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" "RSPO2 WILD-TYPE" 
[1] "hr=" "4.6"
D244V2, continuous
D244V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSPO2 MUTATED      4    2
  RSPO2 WILD-TYPE  150   66
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D244V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSPO2 MUTATED      4    2
  RSPO2 WILD-TYPE  103  115
        clus
vv       RSPO2 MUTATED RSPO2 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D244V5, multiclass
                                clus
vv                               RSPO2 MUTATED RSPO2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D244V6, multiclass
    clus
vv   RSPO2 MUTATED RSPO2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             1             149
  T4             3              14
D244V7, multiclass
    clus
vv   RSPO2 MUTATED RSPO2 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D244V8, multiclass
     clus
vv    RSPO2 MUTATED RSPO2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D244V9, multiclass
     clus
vv    RSPO2 MUTATED RSPO2 WILD-TYPE
  I               2              46
  II              4              78
  III             0              60
  IV              0              29

Clustering(245) Variable = AURKC MUTATION ANALYSIS
D245V1, survival
                 sevent
clus2               0   1
  AURKC MUTATED     4   0
  AURKC WILD-TYPE 102  14
  AURKC MUTATED AURKC WILD-TYPE 
              4             116 
  AURKC MUTATED AURKC WILD-TYPE 
              0              14 
$`AURKC MUTATED`
TCGA-AA-3977 TCGA-AA-A00L TCGA-AG-A002 TCGA-AG-A011 
        1.02        17.00        20.94        17.03 

$`AURKC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  AURKC MUTATED AURKC WILD-TYPE 
           1.02            0.92 
  AURKC MUTATED AURKC WILD-TYPE 
          20.94           72.07 
  AURKC MUTATED AURKC WILD-TYPE 
         17.015          10.770 
[1] "1.0 - 20.9 (17.0)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE"   "AURKC MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"AURKC WILD-TYPE"   "AURKC MUTATED" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" "AURKC WILD-TYPE" 
[1] "hr="     "2.6e+07"
D245V2, continuous
D245V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AURKC MUTATED      5    2
  AURKC WILD-TYPE  149   66
        clus
vv       AURKC MUTATED AURKC WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D245V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AURKC MUTATED      2    5
  AURKC WILD-TYPE  105  112
        clus
vv       AURKC MUTATED AURKC WILD-TYPE
  FEMALE             2             105
  MALE               5             112
D245V5, multiclass
                                clus
vv                               AURKC MUTATED AURKC WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D245V6, multiclass
    clus
vv   AURKC MUTATED AURKC WILD-TYPE
  T1             0               9
  T2             2              45
  T3             5             145
  T4             0              17
D245V7, multiclass
    clus
vv   AURKC MUTATED AURKC WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
D245V8, multiclass
     clus
vv    AURKC MUTATED AURKC WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D245V9, multiclass
     clus
vv    AURKC MUTATED AURKC WILD-TYPE
  I               1              47
  II              4              78
  III             1              59
  IV              0              29

Clustering(246) Variable = FIGN MUTATION ANALYSIS
D246V1, survival
                sevent
clus2              0   1
  FIGN MUTATED     3   4
  FIGN WILD-TYPE 103  10
  FIGN MUTATED FIGN WILD-TYPE 
             7            113 
  FIGN MUTATED FIGN WILD-TYPE 
             4             10 
$`FIGN MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AY-4071 TCGA-AF-3913 TCGA-AG-3887 
        4.01        20.98        38.07         0.95        10.39         0.92 
TCGA-AG-A01W 
       70.03 

$`FIGN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       18.02        40.93        16.31        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  FIGN MUTATED FIGN WILD-TYPE 
          0.92           0.92 
  FIGN MUTATED FIGN WILD-TYPE 
         70.03          72.07 
  FIGN MUTATED FIGN WILD-TYPE 
         10.39          10.98 
[1] "0.9 - 70.0 (10.4)" "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FIGN MUTATED" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FIGN WILD-TYPE" "FIGN WILD-TYPE"   "FIGN MUTATED" "FIGN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" "FIGN WILD-TYPE" 
[1] "hr=" "5.3"
D246V2, continuous
D246V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FIGN MUTATED      5    3
  FIGN WILD-TYPE  149   65
        clus
vv       FIGN MUTATED FIGN WILD-TYPE
  COLON             5            149
  RECTUM            3             65
D246V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FIGN MUTATED      5    4
  FIGN WILD-TYPE  102  113
        clus
vv       FIGN MUTATED FIGN WILD-TYPE
  FEMALE            5            102
  MALE              4            113
D246V5, multiclass
                                clus
vv                               FIGN MUTATED FIGN WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D246V6, multiclass
    clus
vv   FIGN MUTATED FIGN WILD-TYPE
  T1            1              8
  T2            0             47
  T3            6            144
  T4            2             15
D246V7, multiclass
    clus
vv   FIGN MUTATED FIGN WILD-TYPE
  N0            6            128
  N1            2             42
  N2            1             45
D246V8, multiclass
     clus
vv    FIGN MUTATED FIGN WILD-TYPE
  M0             6            183
  M1             2             29
  M1A            0              1
D246V9, multiclass
     clus
vv    FIGN MUTATED FIGN WILD-TYPE
  I              1             47
  II             5             77
  III            1             59
  IV             1             28

Clustering(247) Variable = KCNH7 MUTATION ANALYSIS
D247V1, survival
                 sevent
clus2              0  1
  KCNH7 MUTATED    9  2
  KCNH7 WILD-TYPE 97 12
  KCNH7 MUTATED KCNH7 WILD-TYPE 
             11             109 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
              2              12 
$`KCNH7 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-3966 TCGA-AA-A00J TCGA-AA-A00N 
       14.70         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A01R TCGA-AY-4071 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A02X 
       35.01         0.95        20.94        13.91        40.96 

$`KCNH7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 
       10.98        49.94         1.94        38.93        61.94        38.01 
TCGA-AG-A036 
       72.07 

  KCNH7 MUTATED KCNH7 WILD-TYPE 
           0.95            0.92 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
          40.96           72.07 
  KCNH7 MUTATED KCNH7 WILD-TYPE 
          13.91           10.92 
[1] "0.9 - 41.0 (13.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNH7 MUTATED"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNH7 WILD-TYPE"   "KCNH7 MUTATED" "KCNH7 WILD-TYPE" "KCNH7 WILD-TYPE" 
[1] "hr=" "1.6"
D247V2, continuous
D247V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH7 MUTATED     10    3
  KCNH7 WILD-TYPE  144   65
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D247V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNH7 MUTATED      8    6
  KCNH7 WILD-TYPE   99  111
        clus
vv       KCNH7 MUTATED KCNH7 WILD-TYPE
  FEMALE             8              99
  MALE               6             111
D247V5, multiclass
                                clus
vv                               KCNH7 MUTATED KCNH7 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D247V6, multiclass
    clus
vv   KCNH7 MUTATED KCNH7 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             3              14
D247V7, multiclass
    clus
vv   KCNH7 MUTATED KCNH7 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             1              45
D247V8, multiclass
     clus
vv    KCNH7 MUTATED KCNH7 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             1               0
D247V9, multiclass
     clus
vv    KCNH7 MUTATED KCNH7 WILD-TYPE
  I               4              44
  II              7              75
  III             2              58
  IV              1              28

Clustering(248) Variable = OR7C1 MUTATION ANALYSIS
D248V1, survival
                 sevent
clus2               0   1
  OR7C1 MUTATED     1   1
  OR7C1 WILD-TYPE 105  13
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             118 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              1              13 
$`OR7C1 MUTATED`
TCGA-AA-3518 TCGA-AY-4071 
        1.02         0.95 

$`OR7C1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  OR7C1 MUTATED OR7C1 WILD-TYPE 
           0.95            0.92 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
           1.02           72.07 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
          0.985          11.490 
[1] "0.9 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3526      TCGA-AA-3555 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D248V2, continuous
D248V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      5    0
  OR7C1 WILD-TYPE  149   68
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D248V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      4    2
  OR7C1 WILD-TYPE  103  115
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D248V5, multiclass
                                clus
vv                               OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D248V6, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             4             146
  T4             0              17
D248V7, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
D248V8, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D248V9, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  I               2              46
  II              2              80
  III             2              58
  IV              0              29

Clustering(249) Variable = OR6B3 MUTATION ANALYSIS
D249V1, survival
                 sevent
clus2               0   1
  OR6B3 MUTATED     2   1
  OR6B3 WILD-TYPE 104  13
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              3             117 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              1              13 
$`OR6B3 MUTATED`
TCGA-AA-A00N TCGA-AA-A029 TCGA-AG-A002 
        4.01        51.95        20.94 

$`OR6B3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  OR6B3 MUTATED OR6B3 WILD-TYPE 
           4.01            0.92 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
          51.95           72.07 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
          20.94           10.92 
[1] "4.0 - 52.0 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
[1] "hr=" "1.6"
D249V2, continuous
D249V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6B3 MUTATED      5    1
  OR6B3 WILD-TYPE  149   67
        clus
vv       OR6B3 MUTATED OR6B3 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D249V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6B3 MUTATED      0    6
  OR6B3 WILD-TYPE  107  111
        clus
vv       OR6B3 MUTATED OR6B3 WILD-TYPE
  FEMALE             0             107
  MALE               6             111
D249V5, multiclass
                                clus
vv                               OR6B3 MUTATED OR6B3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D249V6, multiclass
    clus
vv   OR6B3 MUTATED OR6B3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D249V7, multiclass
    clus
vv   OR6B3 MUTATED OR6B3 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D249V8, multiclass
     clus
vv    OR6B3 MUTATED OR6B3 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D249V9, multiclass
     clus
vv    OR6B3 MUTATED OR6B3 WILD-TYPE
  I               2              46
  II              4              78
  III             0              60
  IV              0              29

Clustering(250) Variable = TMPRSS11A MUTATION ANALYSIS
D250V1, survival
                     sevent
clus2                   0   1
  TMPRSS11A MUTATED     4   0
  TMPRSS11A WILD-TYPE 102  14
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  4                 116 
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
                  0                  14 
$`TMPRSS11A MUTATED`
TCGA-AA-3526 TCGA-AA-3966 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02        20.94        13.91 

$`TMPRSS11A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
               0.99                0.92 
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
              20.94               72.07 
  TMPRSS11A MUTATED TMPRSS11A WILD-TYPE 
              7.465              10.950 
[1] "1.0 - 20.9 (7.5)"  "0.9 - 72.1 (10.9)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
  "TMPRSS11A MUTATED" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TMPRSS11A WILD-TYPE"   "TMPRSS11A MUTATED"   "TMPRSS11A MUTATED" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" "TMPRSS11A WILD-TYPE" 
[1] "hr="     "2.5e+07"
D250V2, continuous
D250V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TMPRSS11A MUTATED      5    2
  TMPRSS11A WILD-TYPE  149   66
        clus
vv       TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  COLON                  5                 149
  RECTUM                 2                  66
D250V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TMPRSS11A MUTATED      4    3
  TMPRSS11A WILD-TYPE  103  114
        clus
vv       TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  FEMALE                 4                 103
  MALE                   3                 114
D250V5, multiclass
                                clus
vv                               TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  COLON ADENOCARCINOMA                           3                 125
  COLON MUCINOUS ADENOCARCINOMA                  2                  22
  RECTAL ADENOCARCINOMA                          1                  56
  RECTAL MUCINOUS ADENOCARCINOMA                 1                   7
D250V6, multiclass
    clus
vv   TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  T1                 0                   9
  T2                 4                  43
  T3                 3                 147
  T4                 0                  17
D250V7, multiclass
    clus
vv   TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  N0                 5                 129
  N1                 1                  43
  N2                 1                  45
D250V8, multiclass
     clus
vv    TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  M0                  7                 182
  M1                  0                  31
  M1A                 0                   1
D250V9, multiclass
     clus
vv    TMPRSS11A MUTATED TMPRSS11A WILD-TYPE
  I                   4                  44
  II                  1                  81
  III                 2                  58
  IV                  0                  29

Clustering(251) Variable = OR13C9 MUTATION ANALYSIS
D251V1, survival
                  sevent
clus2                0   1
  OR13C9 MUTATED     4   0
  OR13C9 WILD-TYPE 102  14
  OR13C9 MUTATED OR13C9 WILD-TYPE 
               4              116 
  OR13C9 MUTATED OR13C9 WILD-TYPE 
               0               14 
$`OR13C9 MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A01V TCGA-AG-A002 
        0.99         1.02        35.01        20.94 

$`OR13C9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR13C9 MUTATED OR13C9 WILD-TYPE 
            0.99             0.92 
  OR13C9 MUTATED OR13C9 WILD-TYPE 
           35.01            72.07 
  OR13C9 MUTATED OR13C9 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 35.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" "OR13C9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" "OR13C9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" "OR13C9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE"   "OR13C9 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR13C9 MUTATED" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" "OR13C9 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D251V2, continuous
D251V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C9 MUTATED      4    1
  OR13C9 WILD-TYPE  150   67
        clus
vv       OR13C9 MUTATED OR13C9 WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D251V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C9 MUTATED      1    4
  OR13C9 WILD-TYPE  106  113
        clus
vv       OR13C9 MUTATED OR13C9 WILD-TYPE
  FEMALE              1              106
  MALE                4              113
D251V5, multiclass
                                clus
vv                               OR13C9 MUTATED OR13C9 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D251V6, multiclass
    clus
vv   OR13C9 MUTATED OR13C9 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              0              150
  T4              1               16
D251V7, multiclass
    clus
vv   OR13C9 MUTATED OR13C9 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              0               46
D251V8, multiclass
     clus
vv    OR13C9 MUTATED OR13C9 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D251V9, multiclass
     clus
vv    OR13C9 MUTATED OR13C9 WILD-TYPE
  I                2               46
  II               1               81
  III              1               59
  IV               0               29

Clustering(252) Variable = SSX5 MUTATION ANALYSIS
D252V1, survival
                sevent
clus2              0   1
  SSX5 MUTATED     4   0
  SSX5 WILD-TYPE 102  14
  SSX5 MUTATED SSX5 WILD-TYPE 
             4            116 
  SSX5 MUTATED SSX5 WILD-TYPE 
             0             14 
$`SSX5 MUTATED`
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AG-3583 
        1.02        35.01         0.92         2.01 

$`SSX5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  SSX5 MUTATED SSX5 WILD-TYPE 
          0.92           0.92 
  SSX5 MUTATED SSX5 WILD-TYPE 
         35.01          72.07 
  SSX5 MUTATED SSX5 WILD-TYPE 
         1.515         11.490 
[1] "0.9 - 35.0 (1.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SSX5 MUTATED"   "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE"   "SSX5 MUTATED" "SSX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SSX5 MUTATED"   "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE"   "SSX5 MUTATED" "SSX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SSX5 MUTATED"   "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SSX5 MUTATED" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE"   "SSX5 MUTATED" "SSX5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" "SSX5 WILD-TYPE" 
[1] "hr="     "9300000"
D252V2, continuous
D252V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SSX5 MUTATED      5    1
  SSX5 WILD-TYPE  149   67
        clus
vv       SSX5 MUTATED SSX5 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D252V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SSX5 MUTATED      3    3
  SSX5 WILD-TYPE  104  114
        clus
vv       SSX5 MUTATED SSX5 WILD-TYPE
  FEMALE            3            104
  MALE              3            114
D252V5, multiclass
                                clus
vv                               SSX5 MUTATED SSX5 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D252V6, multiclass
    clus
vv   SSX5 MUTATED SSX5 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            6            144
  T4            0             17
D252V7, multiclass
    clus
vv   SSX5 MUTATED SSX5 WILD-TYPE
  N0            3            131
  N1            1             43
  N2            2             44
D252V8, multiclass
     clus
vv    SSX5 MUTATED SSX5 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D252V9, multiclass
     clus
vv    SSX5 MUTATED SSX5 WILD-TYPE
  I              0             48
  II             3             79
  III            2             58
  IV             1             28

Clustering(253) Variable = AGPAT4 MUTATION ANALYSIS
D253V1, survival
                  sevent
clus2                0   1
  AGPAT4 MUTATED     3   0
  AGPAT4 WILD-TYPE 103  14
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               3              117 
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
               0               14 
$`AGPAT4 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AG-A02N 
        9.14         1.02        61.94 

$`AGPAT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
            1.02             0.92 
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
           61.94            72.07 
  AGPAT4 MUTATED AGPAT4 WILD-TYPE 
            9.14            10.98 
[1] "1.0 - 61.9 (9.1)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AGPAT4 WILD-TYPE"   "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "AGPAT4 MUTATED" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" "AGPAT4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D253V2, continuous
D253V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AGPAT4 MUTATED      5    2
  AGPAT4 WILD-TYPE  149   66
        clus
vv       AGPAT4 MUTATED AGPAT4 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D253V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AGPAT4 MUTATED      3    4
  AGPAT4 WILD-TYPE  104  113
        clus
vv       AGPAT4 MUTATED AGPAT4 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D253V5, multiclass
                                clus
vv                               AGPAT4 MUTATED AGPAT4 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D253V6, multiclass
    clus
vv   AGPAT4 MUTATED AGPAT4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              6              144
  T4              0               17
D253V7, multiclass
    clus
vv   AGPAT4 MUTATED AGPAT4 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D253V8, multiclass
     clus
vv    AGPAT4 MUTATED AGPAT4 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D253V9, multiclass
     clus
vv    AGPAT4 MUTATED AGPAT4 WILD-TYPE
  I                1               47
  II               6               76
  III              0               60
  IV               0               29

Clustering(254) Variable = CYP7B1 MUTATION ANALYSIS
D254V1, survival
                  sevent
clus2                0   1
  CYP7B1 MUTATED     4   1
  CYP7B1 WILD-TYPE 102  13
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               5              115 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               1               13 
$`CYP7B1 MUTATED`
TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A020 TCGA-AG-A02N 
       30.02         4.01        20.98        10.98        61.94 

$`CYP7B1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       63.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
            4.01             0.92 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
           61.94            72.07 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
           20.98            10.62 
[1] "4.0 - 61.9 (21.0)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
[1] "hr=" "1.1"
D254V2, continuous
D254V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      5    2
  CYP7B1 WILD-TYPE  149   66
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D254V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      2    5
  CYP7B1 WILD-TYPE  105  112
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  FEMALE              2              105
  MALE                5              112
D254V5, multiclass
                                clus
vv                               CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D254V6, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              4              146
  T4              3               14
D254V7, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
D254V8, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D254V9, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  I                0               48
  II               5               77
  III              1               59
  IV               1               28

Clustering(255) Variable = OR52H1 MUTATION ANALYSIS
D255V1, survival
                  sevent
clus2                0   1
  OR52H1 MUTATED     4   1
  OR52H1 WILD-TYPE 102  13
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               5              115 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               1               13 
$`OR52H1 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-A002 
        4.01        20.98        35.01         1.02        20.94 

$`OR52H1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR52H1 MUTATED OR52H1 WILD-TYPE 
            1.02             0.92 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
           35.01            72.07 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 35.0 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
[1] "hr=" "1.7"
D255V2, continuous
D255V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52H1 MUTATED      5    2
  OR52H1 WILD-TYPE  149   66
        clus
vv       OR52H1 MUTATED OR52H1 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D255V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52H1 MUTATED      3    4
  OR52H1 WILD-TYPE  104  113
        clus
vv       OR52H1 MUTATED OR52H1 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D255V5, multiclass
                                clus
vv                               OR52H1 MUTATED OR52H1 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D255V6, multiclass
    clus
vv   OR52H1 MUTATED OR52H1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              2              148
  T4              2               15
D255V7, multiclass
    clus
vv   OR52H1 MUTATED OR52H1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
D255V8, multiclass
     clus
vv    OR52H1 MUTATED OR52H1 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D255V9, multiclass
     clus
vv    OR52H1 MUTATED OR52H1 WILD-TYPE
  I                2               46
  II               3               79
  III              2               58
  IV               0               29

Clustering(256) Variable = C15ORF2 MUTATION ANALYSIS
D256V1, survival
                   sevent
clus2                0  1
  C15ORF2 MUTATED   10  1
  C15ORF2 WILD-TYPE 96 13
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               11               109 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
                1                13 
$`C15ORF2 MUTATED`
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A01Z 
        1.02         1.02        30.02         4.01        35.01        20.98 
TCGA-AA-A02Y TCGA-AG-A002 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01Y 
       39.95        20.94        15.91        13.02        63.98 

$`C15ORF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        0.92        40.96        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       23.01        17.03         1.02        12.00        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
             1.02              0.92 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
            63.98             72.07 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
            20.94             10.39 
[1] "1.0 - 64.0 (20.9)" "0.9 - 72.1 (10.4)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
[1] "hr=" "2"  
D256V2, continuous
D256V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      8    4
  C15ORF2 WILD-TYPE  146   64
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON                8               146
  RECTUM               4                64
D256V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      4    8
  C15ORF2 WILD-TYPE  103  109
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  FEMALE               4               103
  MALE                 8               109
D256V5, multiclass
                                clus
vv                               C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        4                53
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D256V6, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  T1               1                 8
  T2               4                43
  T3               6               144
  T4               1                16
D256V7, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  N0              11               123
  N1               0                44
  N2               1                45
D256V8, multiclass
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
D256V9, multiclass
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  I                 4                44
  II                6                76
  III               1                59
  IV                0                29

Clustering(257) Variable = P2RY10 MUTATION ANALYSIS
D257V1, survival
                  sevent
clus2                0   1
  P2RY10 MUTATED     4   2
  P2RY10 WILD-TYPE 102  12
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              114 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               2               12 
$`P2RY10 MUTATED`
TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01F TCGA-AG-A026 
       14.37         0.99         1.02         4.01        13.02         1.94 

$`P2RY10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  P2RY10 MUTATED P2RY10 WILD-TYPE 
            0.99             0.92 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           14.37            72.07 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           2.975           11.490 
[1] "1.0 - 14.4 (3.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
[1] "hr=" "6"  
D257V2, continuous
D257V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      6    1
  P2RY10 WILD-TYPE  148   67
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D257V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    4
  P2RY10 WILD-TYPE  104  113
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D257V5, multiclass
                                clus
vv                               P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D257V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              2               15
D257V7, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
D257V8, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D257V9, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  I                0               48
  II               4               78
  III              2               58
  IV               0               29

Clustering(258) Variable = SCML4 MUTATION ANALYSIS
D258V1, survival
                 sevent
clus2               0   1
  SCML4 MUTATED     6   0
  SCML4 WILD-TYPE 100  14
  SCML4 MUTATED SCML4 WILD-TYPE 
              6             114 
  SCML4 MUTATED SCML4 WILD-TYPE 
              0              14 
$`SCML4 MUTATED`
TCGA-AA-3877 TCGA-AA-A010 TCGA-AA-A017 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01L 
        0.99        20.98        15.02         1.02        20.94        12.00 

$`SCML4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SCML4 MUTATED SCML4 WILD-TYPE 
           0.99            0.92 
  SCML4 MUTATED SCML4 WILD-TYPE 
          20.98           72.07 
  SCML4 MUTATED SCML4 WILD-TYPE 
          13.51           10.77 
[1] "1.0 - 21.0 (13.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE"   "SCML4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCML4 MUTATED"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE"   "SCML4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCML4 MUTATED"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE"   "SCML4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCML4 MUTATED"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCML4 WILD-TYPE"   "SCML4 MUTATED" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" "SCML4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D258V2, continuous
D258V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCML4 MUTATED      4    3
  SCML4 WILD-TYPE  150   65
        clus
vv       SCML4 MUTATED SCML4 WILD-TYPE
  COLON              4             150
  RECTUM             3              65
D258V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCML4 MUTATED      5    2
  SCML4 WILD-TYPE  102  115
        clus
vv       SCML4 MUTATED SCML4 WILD-TYPE
  FEMALE             5             102
  MALE               2             115
D258V5, multiclass
                                clus
vv                               SCML4 MUTATED SCML4 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D258V6, multiclass
    clus
vv   SCML4 MUTATED SCML4 WILD-TYPE
  T1             2               7
  T2             1              46
  T3             3             147
  T4             1              16
D258V7, multiclass
    clus
vv   SCML4 MUTATED SCML4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D258V8, multiclass
     clus
vv    SCML4 MUTATED SCML4 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D258V9, multiclass
     clus
vv    SCML4 MUTATED SCML4 WILD-TYPE
  I               3              45
  II              2              80
  III             1              59
  IV              1              28

Clustering(259) Variable = SLC8A1 MUTATION ANALYSIS
D259V1, survival
                  sevent
clus2               0  1
  SLC8A1 MUTATED    8  0
  SLC8A1 WILD-TYPE 98 14
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
               8              112 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
               0               14 
$`SLC8A1 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E 
        0.99         1.02         0.99         0.99         1.02        30.02 
TCGA-AA-A010 TCGA-AG-A002 
       20.98        20.94 

$`SLC8A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
            0.99             0.92 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
           30.02            72.07 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D259V2, continuous
D259V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED     11    2
  SLC8A1 WILD-TYPE  143   66
        clus
vv       SLC8A1 MUTATED SLC8A1 WILD-TYPE
  COLON              11              143
  RECTUM              2               66
D259V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED      8    5
  SLC8A1 WILD-TYPE   99  112
        clus
vv       SLC8A1 MUTATED SLC8A1 WILD-TYPE
  FEMALE              8               99
  MALE                5              112
D259V5, multiclass
                                clus
vv                               SLC8A1 MUTATED SLC8A1 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D259V6, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              8              142
  T4              1               16
D259V7, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  N0             11              123
  N1              2               42
  N2              0               46
D259V8, multiclass
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  M0              12              177
  M1               0               31
  M1A              0                1
D259V9, multiclass
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  I                3               45
  II               7               75
  III              2               58
  IV               0               29

Clustering(260) Variable = HRNR MUTATION ANALYSIS
D260V1, survival
                sevent
clus2             0  1
  HRNR MUTATED    8  2
  HRNR WILD-TYPE 98 12
  HRNR MUTATED HRNR WILD-TYPE 
            10            110 
  HRNR MUTATED HRNR WILD-TYPE 
             2             12 
$`HRNR MUTATED`
TCGA-A6-2672 TCGA-AA-3518 TCGA-AA-3666 TCGA-AA-3818 TCGA-AA-A00J TCGA-AA-A01R 
       16.54         1.02         1.02         0.99        18.02        35.01 
TCGA-AG-3599 TCGA-AG-3893 TCGA-AG-A002 TCGA-AG-A02X 
        0.99         0.99        20.94        40.96 

$`HRNR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       30.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  HRNR MUTATED HRNR WILD-TYPE 
          0.99           0.92 
  HRNR MUTATED HRNR WILD-TYPE 
         40.96          72.07 
  HRNR MUTATED HRNR WILD-TYPE 
          8.78          10.95 
[1] "1.0 - 41.0 (8.8)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
[1] "hr=" "1.9"
D260V2, continuous
D260V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     11    4
  HRNR WILD-TYPE  143   64
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D260V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED      3   12
  HRNR WILD-TYPE  104  105
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  FEMALE            3            104
  MALE             12            105
D260V5, multiclass
                                clus
vv                               HRNR MUTATED HRNR WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D260V6, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  T1            0              9
  T2            6             41
  T3            7            143
  T4            2             15
D260V7, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  N0            9            125
  N1            5             39
  N2            1             45
D260V8, multiclass
     clus
vv    HRNR MUTATED HRNR WILD-TYPE
  M0            14            175
  M1             1             30
  M1A            0              1
D260V9, multiclass
     clus
vv    HRNR MUTATED HRNR WILD-TYPE
  I              6             42
  II             3             79
  III            5             55
  IV             1             28

Clustering(261) Variable = UGGT2 MUTATION ANALYSIS
D261V1, survival
                 sevent
clus2               0   1
  UGGT2 MUTATED     5   2
  UGGT2 WILD-TYPE 101  12
  UGGT2 MUTATED UGGT2 WILD-TYPE 
              7             113 
  UGGT2 MUTATED UGGT2 WILD-TYPE 
              2              12 
$`UGGT2 MUTATED`
TCGA-AA-3844 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A02H TCGA-AY-4070 TCGA-AG-3887 
        0.92         1.02        20.98         2.01        16.31         0.92 
TCGA-AG-A002 
       20.94 

$`UGGT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  UGGT2 MUTATED UGGT2 WILD-TYPE 
           0.92            0.92 
  UGGT2 MUTATED UGGT2 WILD-TYPE 
          20.98           72.07 
  UGGT2 MUTATED UGGT2 WILD-TYPE 
           2.01           10.98 
[1] "0.9 - 21.0 (2.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UGGT2 WILD-TYPE"   "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "UGGT2 MUTATED" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" "UGGT2 WILD-TYPE" 
[1] "hr=" "4"  
D261V2, continuous
D261V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UGGT2 MUTATED      9    3
  UGGT2 WILD-TYPE  145   65
        clus
vv       UGGT2 MUTATED UGGT2 WILD-TYPE
  COLON              9             145
  RECTUM             3              65
D261V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UGGT2 MUTATED      8    4
  UGGT2 WILD-TYPE   99  113
        clus
vv       UGGT2 MUTATED UGGT2 WILD-TYPE
  FEMALE             8              99
  MALE               4             113
D261V5, multiclass
                                clus
vv                               UGGT2 MUTATED UGGT2 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             2               6
D261V6, multiclass
    clus
vv   UGGT2 MUTATED UGGT2 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             1              16
D261V7, multiclass
    clus
vv   UGGT2 MUTATED UGGT2 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             5              41
D261V8, multiclass
     clus
vv    UGGT2 MUTATED UGGT2 WILD-TYPE
  M0              8             181
  M1              3              28
  M1A             0               1
D261V9, multiclass
     clus
vv    UGGT2 MUTATED UGGT2 WILD-TYPE
  I               2              46
  II              3              79
  III             3              57
  IV              3              26

Clustering(262) Variable = MARCO MUTATION ANALYSIS
D262V1, survival
                 sevent
clus2               0   1
  MARCO MUTATED     4   1
  MARCO WILD-TYPE 102  13
  MARCO MUTATED MARCO WILD-TYPE 
              5             115 
  MARCO MUTATED MARCO WILD-TYPE 
              1              13 
$`MARCO MUTATED`
TCGA-AA-3555 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AG-A002 
        0.99         4.01        20.98        12.00        20.94 

$`MARCO WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  MARCO MUTATED MARCO WILD-TYPE 
           0.99            0.92 
  MARCO MUTATED MARCO WILD-TYPE 
          20.98           72.07 
  MARCO MUTATED MARCO WILD-TYPE 
          12.00           10.92 
[1] "1.0 - 21.0 (12.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
[1] "hr=" "1.9"
D262V2, continuous
D262V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      9    1
  MARCO WILD-TYPE  145   67
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D262V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      6    4
  MARCO WILD-TYPE  101  113
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  FEMALE             6             101
  MALE               4             113
D262V5, multiclass
                                clus
vv                               MARCO MUTATED MARCO WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D262V6, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  T1             0               9
  T2             3              44
  T3             5             145
  T4             2              15
D262V7, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  N0             9             125
  N1             0              44
  N2             1              45
D262V8, multiclass
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D262V9, multiclass
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  I               3              45
  II              6              76
  III             0              60
  IV              1              28

Clustering(263) Variable = IGFBP3 MUTATION ANALYSIS
D263V1, survival
                  sevent
clus2                0   1
  IGFBP3 MUTATED     3   0
  IGFBP3 WILD-TYPE 103  14
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               3              117 
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
               0               14 
$`IGFBP3 MUTATED`
TCGA-A6-2677 TCGA-AA-3966 TCGA-AG-4007 
       17.79         1.02         1.02 

$`IGFBP3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
            1.02             0.92 
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
           17.79            72.07 
  IGFBP3 MUTATED IGFBP3 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 17.8 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE"   "IGFBP3 MUTATED" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" "IGFBP3 WILD-TYPE" 
[1] "hr="     "9200000"
D263V2, continuous
D263V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IGFBP3 MUTATED      2    2
  IGFBP3 WILD-TYPE  152   66
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  COLON               2              152
  RECTUM              2               66
D263V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IGFBP3 MUTATED      3    1
  IGFBP3 WILD-TYPE  104  116
        clus
vv       IGFBP3 MUTATED IGFBP3 WILD-TYPE
  FEMALE              3              104
  MALE                1              116
D263V5, multiclass
                                clus
vv                               IGFBP3 MUTATED IGFBP3 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D263V6, multiclass
    clus
vv   IGFBP3 MUTATED IGFBP3 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              1               16
D263V7, multiclass
    clus
vv   IGFBP3 MUTATED IGFBP3 WILD-TYPE
  N0              2              132
  N1              0               44
  N2              2               44
D263V8, multiclass
     clus
vv    IGFBP3 MUTATED IGFBP3 WILD-TYPE
  M0               3              186
  M1               1               30
  M1A              0                1
D263V9, multiclass
     clus
vv    IGFBP3 MUTATED IGFBP3 WILD-TYPE
  I                0               48
  II               2               80
  III              1               59
  IV               1               28

Clustering(264) Variable = ZNF560 MUTATION ANALYSIS
D264V1, survival
                  sevent
clus2                0   1
  ZNF560 MUTATED     6   1
  ZNF560 WILD-TYPE 100  13
  ZNF560 MUTATED ZNF560 WILD-TYPE 
               7              113 
  ZNF560 MUTATED ZNF560 WILD-TYPE 
               1               13 
$`ZNF560 MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-4001 
        0.99         1.02         4.01        20.98         1.02         1.02 
TCGA-AG-A002 
       20.94 

$`ZNF560 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ZNF560 MUTATED ZNF560 WILD-TYPE 
            0.99             0.92 
  ZNF560 MUTATED ZNF560 WILD-TYPE 
           20.98            72.07 
  ZNF560 MUTATED ZNF560 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE"   "ZNF560 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE"   "ZNF560 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE"   "ZNF560 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF560 WILD-TYPE"   "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF560 MUTATED" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" "ZNF560 WILD-TYPE" 
[1] "hr=" "1.9"
D264V2, continuous
D264V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF560 MUTATED      7    3
  ZNF560 WILD-TYPE  147   65
        clus
vv       ZNF560 MUTATED ZNF560 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D264V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF560 MUTATED      5    5
  ZNF560 WILD-TYPE  102  112
        clus
vv       ZNF560 MUTATED ZNF560 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
D264V5, multiclass
                                clus
vv                               ZNF560 MUTATED ZNF560 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D264V6, multiclass
    clus
vv   ZNF560 MUTATED ZNF560 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              4              146
  T4              3               14
D264V7, multiclass
    clus
vv   ZNF560 MUTATED ZNF560 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              2               44
D264V8, multiclass
     clus
vv    ZNF560 MUTATED ZNF560 WILD-TYPE
  M0               7              182
  M1               2               29
  M1A              0                1
D264V9, multiclass
     clus
vv    ZNF560 MUTATED ZNF560 WILD-TYPE
  I                2               46
  II               4               78
  III              1               59
  IV               2               27

Clustering(265) Variable = TUSC3 MUTATION ANALYSIS
D265V1, survival
                 sevent
clus2               0   1
  TUSC3 MUTATED     6   0
  TUSC3 WILD-TYPE 100  14
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              6             114 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              0              14 
$`TUSC3 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-A00D TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-A002 
       14.70         1.02        19.00        20.98         0.92        20.94 

$`TUSC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TUSC3 MUTATED TUSC3 WILD-TYPE 
           0.92            0.92 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          20.98           72.07 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          16.85           10.77 
[1] "0.9 - 21.0 (16.9)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D265V2, continuous
D265V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      5    2
  TUSC3 WILD-TYPE  149   66
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D265V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    4
  TUSC3 WILD-TYPE  104  113
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D265V5, multiclass
                                clus
vv                               TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D265V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
D265V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
D265V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D265V9, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  I               2              46
  II              4              78
  III             1              59
  IV              0              29

Clustering(266) Variable = RNF43 MUTATION ANALYSIS
D266V1, survival
                 sevent
clus2              0  1
  RNF43 MUTATED    9  1
  RNF43 WILD-TYPE 97 13
  RNF43 MUTATED RNF43 WILD-TYPE 
             10             110 
  RNF43 MUTATED RNF43 WILD-TYPE 
              1              13 
$`RNF43 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00K 
        1.02         0.99         1.02         0.99         0.99        18.02 
TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01P TCGA-AG-A002 
       20.98        12.00        38.07        20.94 

$`RNF43 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.99            0.92 
  RNF43 MUTATED RNF43 WILD-TYPE 
          38.07           72.07 
  RNF43 MUTATED RNF43 WILD-TYPE 
           6.51           10.95 
[1] "1.0 - 38.1 (6.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
[1] "hr=" "1"  
D266V2, continuous
D266V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED     10    1
  RNF43 WILD-TYPE  144   67
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  COLON             10             144
  RECTUM             1              67
D266V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      7    4
  RNF43 WILD-TYPE  100  113
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             7             100
  MALE               4             113
D266V5, multiclass
                                clus
vv                               RNF43 MUTATED RNF43 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D266V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             7             143
  T4             2              15
D266V7, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             0              46
D266V8, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D266V9, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  I               2              46
  II              7              75
  III             2              58
  IV              0              29

Clustering(267) Variable = FERD3L MUTATION ANALYSIS
D267V1, survival
                  sevent
clus2                0   1
  FERD3L MUTATED     2   0
  FERD3L WILD-TYPE 104  14
  FERD3L MUTATED FERD3L WILD-TYPE 
               2              118 
  FERD3L MUTATED FERD3L WILD-TYPE 
               0               14 
$`FERD3L MUTATED`
TCGA-AA-3715 TCGA-AA-A02Y 
        0.99        39.95 

$`FERD3L WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FERD3L MUTATED FERD3L WILD-TYPE 
            0.99             0.92 
  FERD3L MUTATED FERD3L WILD-TYPE 
           39.95            72.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
           20.47            10.95 
[1] "1.0 - 40.0 (20.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
[1] "Remove cluster labels:" "FERD3L MUTATED"        
clus
  FERD3L MUTATED FERD3L WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3818 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877       TCGA-AA-3939 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
D267V2, continuous
D267V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    1
  FERD3L WILD-TYPE  150   67
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D267V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      0    5
  FERD3L WILD-TYPE  107  112
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              0              107
  MALE                5              112
D267V5, multiclass
                                clus
vv                               FERD3L MUTATED FERD3L WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D267V6, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  T1              0                9
  T2              2               45
  T3              2              148
  T4              1               16
D267V7, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  N0              3              131
  N1              1               43
  N2              1               45
D267V8, multiclass
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  M0               3              186
  M1               2               29
  M1A              0                1
D267V9, multiclass
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  I                2               46
  II               1               81
  III              0               60
  IV               2               27

Clustering(268) Variable = CACNG3 MUTATION ANALYSIS
D268V1, survival
                  sevent
clus2                0   1
  CACNG3 MUTATED     6   0
  CACNG3 WILD-TYPE 100  14
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               6              114 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               0               14 
$`CACNG3 MUTATED`
TCGA-A6-3808 TCGA-AA-A010 TCGA-AA-A01D TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        9.14        20.98         0.99         1.02         0.99        20.94 

$`CACNG3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99        15.02        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CACNG3 MUTATED CACNG3 WILD-TYPE 
            0.99             0.92 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
           20.98            72.07 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
            5.08            11.49 
[1] "1.0 - 21.0 (5.1)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D268V2, continuous
D268V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      5    3
  CACNG3 WILD-TYPE  149   65
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D268V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      5    3
  CACNG3 WILD-TYPE  102  114
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D268V5, multiclass
                                clus
vv                               CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D268V6, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              5              145
  T4              1               16
D268V7, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              1               45
D268V8, multiclass
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D268V9, multiclass
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               0               29

Clustering(269) Variable = FGA MUTATION ANALYSIS
D269V1, survival
               sevent
clus2             0   1
  FGA MUTATED     6   2
  FGA WILD-TYPE 100  12
  FGA MUTATED FGA WILD-TYPE 
            8           112 
  FGA MUTATED FGA WILD-TYPE 
            2            12 
$`FGA MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 
        1.02         0.99        18.02         4.01         0.99        20.98 
TCGA-AA-A01Q TCGA-AG-A002 
        1.02        20.94 

$`FGA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FGA MUTATED FGA WILD-TYPE 
         0.99          0.92 
  FGA MUTATED FGA WILD-TYPE 
        20.98         72.07 
  FGA MUTATED FGA WILD-TYPE 
        2.515        11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FGA WILD-TYPE" "FGA WILD-TYPE"   "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FGA MUTATED" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" "FGA WILD-TYPE" 
[1] "hr=" "3.4"
D269V2, continuous
D269V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGA MUTATED     10    2
  FGA WILD-TYPE  144   66
        clus
vv       FGA MUTATED FGA WILD-TYPE
  COLON           10           144
  RECTUM           2            66
D269V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGA MUTATED      6    6
  FGA WILD-TYPE  101  111
        clus
vv       FGA MUTATED FGA WILD-TYPE
  FEMALE           6           101
  MALE             6           111
D269V5, multiclass
                                clus
vv                               FGA MUTATED FGA WILD-TYPE
  COLON ADENOCARCINOMA                     8           120
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D269V6, multiclass
    clus
vv   FGA MUTATED FGA WILD-TYPE
  T1           0             9
  T2           3            44
  T3           7           143
  T4           2            15
D269V7, multiclass
    clus
vv   FGA MUTATED FGA WILD-TYPE
  N0           9           125
  N1           3            41
  N2           0            46
D269V8, multiclass
     clus
vv    FGA MUTATED FGA WILD-TYPE
  M0           12           177
  M1            0            31
  M1A           0             1
D269V9, multiclass
     clus
vv    FGA MUTATED FGA WILD-TYPE
  I             3            45
  II            6            76
  III           3            57
  IV            0            29

Clustering(270) Variable = COL22A1 MUTATION ANALYSIS
D270V1, survival
                   sevent
clus2                0  1
  COL22A1 MUTATED    7  0
  COL22A1 WILD-TYPE 99 14
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                7               113 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                0                14 
$`COL22A1 MUTATED`
TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A02W TCGA-AG-A002 
        0.99         0.99         1.02        20.98        40.96        20.94 
TCGA-AG-A00H 
       25.94 

$`COL22A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  COL22A1 MUTATED COL22A1 WILD-TYPE 
             0.99              0.92 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
            40.96             72.07 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
            20.94             10.92 
[1] "1.0 - 41.0 (20.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D270V2, continuous
D270V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED     14    2
  COL22A1 WILD-TYPE  140   66
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  COLON               14               140
  RECTUM               2                66
D270V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED      8    8
  COL22A1 WILD-TYPE   99  109
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  FEMALE               8                99
  MALE                 8               109
D270V5, multiclass
                                clus
vv                               COL22A1 MUTATED COL22A1 WILD-TYPE
  COLON ADENOCARCINOMA                        11               117
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D270V6, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  T1               0                 9
  T2               4                43
  T3              10               140
  T4               2                15
D270V7, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  N0              11               123
  N1               1                43
  N2               4                42
D270V8, multiclass
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  M0               13               176
  M1                2                29
  M1A               0                 1
D270V9, multiclass
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  I                 2                46
  II                8                74
  III               3                57
  IV                2                27

Clustering(271) Variable = SLC6A15 MUTATION ANALYSIS
D271V1, survival
                   sevent
clus2                 0   1
  SLC6A15 MUTATED     6   2
  SLC6A15 WILD-TYPE 100  12
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
                8               112 
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
                2                12 
$`SLC6A15 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-A00N TCGA-AA-A010 TCGA-AF-3913 
        1.02         0.99         0.99         4.01        20.98        10.39 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`SLC6A15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
             0.99              0.92 
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
            20.98             72.07 
  SLC6A15 MUTATED SLC6A15 WILD-TYPE 
            2.515            12.000 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC6A15 WILD-TYPE"   "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLC6A15 MUTATED" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" "SLC6A15 WILD-TYPE" 
[1] "hr=" "3.6"
D271V2, continuous
D271V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC6A15 MUTATED      7    3
  SLC6A15 WILD-TYPE  147   65
        clus
vv       SLC6A15 MUTATED SLC6A15 WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D271V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC6A15 MUTATED      6    4
  SLC6A15 WILD-TYPE  101  113
        clus
vv       SLC6A15 MUTATED SLC6A15 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
D271V5, multiclass
                                clus
vv                               SLC6A15 MUTATED SLC6A15 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D271V6, multiclass
    clus
vv   SLC6A15 MUTATED SLC6A15 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
D271V7, multiclass
    clus
vv   SLC6A15 MUTATED SLC6A15 WILD-TYPE
  N0               7               127
  N1               3                41
  N2               0                46
D271V8, multiclass
     clus
vv    SLC6A15 MUTATED SLC6A15 WILD-TYPE
  M0                9               180
  M1                1                30
  M1A               0                 1
D271V9, multiclass
     clus
vv    SLC6A15 MUTATED SLC6A15 WILD-TYPE
  I                 2                46
  II                5                77
  III               2                58
  IV                0                29

Clustering(272) Variable = PROKR1 MUTATION ANALYSIS
D272V1, survival
                  sevent
clus2               0  1
  PROKR1 MUTATED    7  0
  PROKR1 WILD-TYPE 99 14
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               7              113 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               0               14 
$`PROKR1 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R 
        1.02         1.02        30.02        20.98        12.00        35.01 
TCGA-AG-3892 
        1.02 

$`PROKR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       21.99        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PROKR1 MUTATED PROKR1 WILD-TYPE 
            1.02             0.92 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
           35.01            72.07 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
           12.00            10.92 
[1] "1.0 - 35.0 (12.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D272V2, continuous
D272V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      8    1
  PROKR1 WILD-TYPE  146   67
        clus
vv       PROKR1 MUTATED PROKR1 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D272V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      4    5
  PROKR1 WILD-TYPE  103  112
        clus
vv       PROKR1 MUTATED PROKR1 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D272V5, multiclass
                                clus
vv                               PROKR1 MUTATED PROKR1 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D272V6, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              1               16
D272V7, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              1               45
D272V8, multiclass
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D272V9, multiclass
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               0               29

Clustering(273) Variable = CADM1 MUTATION ANALYSIS
D273V1, survival
                 sevent
clus2               0   1
  CADM1 MUTATED     4   1
  CADM1 WILD-TYPE 102  13
  CADM1 MUTATED CADM1 WILD-TYPE 
              5             115 
  CADM1 MUTATED CADM1 WILD-TYPE 
              1              13 
$`CADM1 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 
        1.02         0.99         0.99         1.02        20.98 

$`CADM1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CADM1 MUTATED CADM1 WILD-TYPE 
           0.99            0.92 
  CADM1 MUTATED CADM1 WILD-TYPE 
          20.98           72.07 
  CADM1 MUTATED CADM1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
[1] "hr=" "4"  
D273V2, continuous
D273V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM1 MUTATED      8    0
  CADM1 WILD-TYPE  146   68
        clus
vv       CADM1 MUTATED CADM1 WILD-TYPE
  COLON              8             146
  RECTUM             0              68
D273V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM1 MUTATED      6    2
  CADM1 WILD-TYPE  101  115
        clus
vv       CADM1 MUTATED CADM1 WILD-TYPE
  FEMALE             6             101
  MALE               2             115
D273V5, multiclass
                                clus
vv                               CADM1 MUTATED CADM1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D273V6, multiclass
    clus
vv   CADM1 MUTATED CADM1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             1              16
D273V7, multiclass
    clus
vv   CADM1 MUTATED CADM1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
D273V8, multiclass
     clus
vv    CADM1 MUTATED CADM1 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
D273V9, multiclass
     clus
vv    CADM1 MUTATED CADM1 WILD-TYPE
  I               1              47
  II              4              78
  III             2              58
  IV              1              28

Clustering(274) Variable = FAM47C MUTATION ANALYSIS
D274V1, survival
                  sevent
clus2               0  1
  FAM47C MUTATED    8  1
  FAM47C WILD-TYPE 98 13
  FAM47C MUTATED FAM47C WILD-TYPE 
               9              111 
  FAM47C MUTATED FAM47C WILD-TYPE 
               1               13 
$`FAM47C MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A024 TCGA-AA-A02F 
        1.02         0.99         1.02        20.98        39.06        39.95 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A01Y 
       20.94         6.02        63.98 

$`FAM47C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J 
       35.01        26.01        20.98        51.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02         1.02         1.02        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  FAM47C MUTATED FAM47C WILD-TYPE 
            0.99             0.92 
  FAM47C MUTATED FAM47C WILD-TYPE 
           63.98            72.07 
  FAM47C MUTATED FAM47C WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 64.0 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM47C MUTATED" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM47C MUTATED" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM47C MUTATED" "FAM47C WILD-TYPE"   "FAM47C MUTATED" "FAM47C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE"   "FAM47C MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" "FAM47C WILD-TYPE" 
[1] "hr=" "1.8"
D274V2, continuous
D274V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED      8    4
  FAM47C WILD-TYPE  146   64
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  COLON               8              146
  RECTUM              4               64
D274V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47C MUTATED      7    5
  FAM47C WILD-TYPE  100  112
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  FEMALE              7              100
  MALE                5              112
D274V5, multiclass
                                clus
vv                               FAM47C MUTATED FAM47C WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D274V6, multiclass
    clus
vv   FAM47C MUTATED FAM47C WILD-TYPE
  T1              0                9
  T2              1               46
  T3             10              140
  T4              1               16
D274V7, multiclass
    clus
vv   FAM47C MUTATED FAM47C WILD-TYPE
  N0              8              126
  N1              3               41
  N2              1               45
D274V8, multiclass
     clus
vv    FAM47C MUTATED FAM47C WILD-TYPE
  M0               9              180
  M1               3               28
  M1A              0                1
D274V9, multiclass
     clus
vv    FAM47C MUTATED FAM47C WILD-TYPE
  I                1               47
  II               7               75
  III              1               59
  IV               3               26

Clustering(275) Variable = PTPRT MUTATION ANALYSIS
D275V1, survival
                 sevent
clus2              0  1
  PTPRT MUTATED    7  1
  PTPRT WILD-TYPE 99 13
  PTPRT MUTATED PTPRT WILD-TYPE 
              8             112 
  PTPRT MUTATED PTPRT WILD-TYPE 
              1              13 
$`PTPRT MUTATED`
TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A01Z TCGA-AA-A02W TCGA-AG-3892 TCGA-AG-3999 
        0.99         4.01        20.98        40.96         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A02N 
       20.94        61.94 

$`PTPRT WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        26.01        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        40.96        38.01        72.07 

  PTPRT MUTATED PTPRT WILD-TYPE 
           0.99            0.92 
  PTPRT MUTATED PTPRT WILD-TYPE 
          61.94           72.07 
  PTPRT MUTATED PTPRT WILD-TYPE 
         12.475          10.950 
[1] "1.0 - 61.9 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRT WILD-TYPE"   "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRT MUTATED" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" "PTPRT WILD-TYPE" 
[1] "hr=" "1.3"
D275V2, continuous
D275V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRT MUTATED     10    4
  PTPRT WILD-TYPE  144   64
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D275V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRT MUTATED      8    6
  PTPRT WILD-TYPE   99  111
        clus
vv       PTPRT MUTATED PTPRT WILD-TYPE
  FEMALE             8              99
  MALE               6             111
D275V5, multiclass
                                clus
vv                               PTPRT MUTATED PTPRT WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D275V6, multiclass
    clus
vv   PTPRT MUTATED PTPRT WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             2              15
D275V7, multiclass
    clus
vv   PTPRT MUTATED PTPRT WILD-TYPE
  N0            12             122
  N1             0              44
  N2             2              44
D275V8, multiclass
     clus
vv    PTPRT MUTATED PTPRT WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
D275V9, multiclass
     clus
vv    PTPRT MUTATED PTPRT WILD-TYPE
  I               4              44
  II              8              74
  III             1              59
  IV              1              28

Clustering(276) Variable = MYO16 MUTATION ANALYSIS
D276V1, survival
                 sevent
clus2              0  1
  MYO16 MUTATED    8  1
  MYO16 WILD-TYPE 98 13
  MYO16 MUTATED MYO16 WILD-TYPE 
              9             111 
  MYO16 MUTATED MYO16 WILD-TYPE 
              1              13 
$`MYO16 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         0.99         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        4.01        20.98        20.94 

$`MYO16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  MYO16 MUTATED MYO16 WILD-TYPE 
           0.99            0.92 
  MYO16 MUTATED MYO16 WILD-TYPE 
          30.02           72.07 
  MYO16 MUTATED MYO16 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 30.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
[1] "hr=" "1.2"
D276V2, continuous
D276V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED     15    2
  MYO16 WILD-TYPE  139   66
        clus
vv       MYO16 MUTATED MYO16 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D276V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED      8    9
  MYO16 WILD-TYPE   99  108
        clus
vv       MYO16 MUTATED MYO16 WILD-TYPE
  FEMALE             8              99
  MALE               9             108
D276V5, multiclass
                                clus
vv                               MYO16 MUTATED MYO16 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D276V6, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             4              13
D276V7, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  N0            14             120
  N1             1              43
  N2             2              44
D276V8, multiclass
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  M0             15             174
  M1              1              30
  M1A             0               1
D276V9, multiclass
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  I               3              45
  II             10              72
  III             2              58
  IV              1              28

Clustering(277) Variable = RPS23 MUTATION ANALYSIS
D277V1, survival
                 sevent
clus2               0   1
  RPS23 MUTATED     2   0
  RPS23 WILD-TYPE 104  14
  RPS23 MUTATED RPS23 WILD-TYPE 
              2             118 
  RPS23 MUTATED RPS23 WILD-TYPE 
              0              14 
$`RPS23 MUTATED`
TCGA-AA-3977 TCGA-AA-A01V 
        1.02        35.01 

$`RPS23 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  RPS23 MUTATED RPS23 WILD-TYPE 
           1.02            0.92 
  RPS23 MUTATED RPS23 WILD-TYPE 
          35.01           72.07 
  RPS23 MUTATED RPS23 WILD-TYPE 
         18.015          10.950 
[1] "1.0 - 35.0 (18.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
[1] "Remove cluster labels:" "RPS23 MUTATED"         
clus
  RPS23 MUTATED RPS23 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3986 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01X 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
D277V2, continuous
D277V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPS23 MUTATED      4    0
  RPS23 WILD-TYPE  150   68
        clus
vv       RPS23 MUTATED RPS23 WILD-TYPE
  COLON              4             150
  RECTUM             0              68
D277V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPS23 MUTATED      1    3
  RPS23 WILD-TYPE  106  114
        clus
vv       RPS23 MUTATED RPS23 WILD-TYPE
  FEMALE             1             106
  MALE               3             114
D277V5, multiclass
                                clus
vv                               RPS23 MUTATED RPS23 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D277V6, multiclass
    clus
vv   RPS23 MUTATED RPS23 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             2             148
  T4             0              17
D277V7, multiclass
    clus
vv   RPS23 MUTATED RPS23 WILD-TYPE
  N0             3             131
  N1             1              43
  N2             0              46
D277V8, multiclass
     clus
vv    RPS23 MUTATED RPS23 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
D277V9, multiclass
     clus
vv    RPS23 MUTATED RPS23 WILD-TYPE
  I               1              47
  II              1              81
  III             1              59
  IV              0              29

Clustering(278) Variable = COL11A1 MUTATION ANALYSIS
D278V1, survival
                   sevent
clus2                0  1
  COL11A1 MUTATED   11  1
  COL11A1 WILD-TYPE 95 13
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               12               108 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
                1                13 
$`COL11A1 MUTATED`
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         1.02         0.99         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01Q TCGA-AG-3599 TCGA-AG-3892 TCGA-AG-A002 
       20.98        15.02         1.02         0.99         1.02        20.94 

$`COL11A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3811 TCGA-AA-3818 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F 
        0.99        17.00        14.99        21.99         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        1.02         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  COL11A1 MUTATED COL11A1 WILD-TYPE 
             0.99              0.92 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
            20.98             72.07 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
[1] "hr=" "1.4"
D278V2, continuous
D278V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     14    4
  COL11A1 WILD-TYPE  140   64
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  COLON               14               140
  RECTUM               4                64
D278V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     11    7
  COL11A1 WILD-TYPE   96  110
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  FEMALE              11                96
  MALE                 7               110
D278V5, multiclass
                                clus
vv                               COL11A1 MUTATED COL11A1 WILD-TYPE
  COLON ADENOCARCINOMA                        12               116
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D278V6, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  T1               1                 8
  T2               3                44
  T3              10               140
  T4               4                13
D278V7, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  N0              14               120
  N1               2                42
  N2               2                44
D278V8, multiclass
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  M0               16               173
  M1                1                30
  M1A               0                 1
D278V9, multiclass
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  I                 3                45
  II               10                72
  III               3                57
  IV                1                28

Clustering(279) Variable = FSTL1 MUTATION ANALYSIS
D279V1, survival
                 sevent
clus2               0   1
  FSTL1 MUTATED     3   0
  FSTL1 WILD-TYPE 103  14
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              3             117 
  FSTL1 MUTATED FSTL1 WILD-TYPE 
              0              14 
$`FSTL1 MUTATED`
TCGA-AA-3846 TCGA-AA-3966 TCGA-AA-A010 
        0.99         1.02        20.98 

$`FSTL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  FSTL1 MUTATED FSTL1 WILD-TYPE 
           0.99            0.92 
  FSTL1 MUTATED FSTL1 WILD-TYPE 
          20.98           72.07 
  FSTL1 MUTATED FSTL1 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL1 WILD-TYPE"   "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL1 MUTATED" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" "FSTL1 WILD-TYPE" 
[1] "hr="     "9200000"
D279V2, continuous
D279V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL1 MUTATED      5    1
  FSTL1 WILD-TYPE  149   67
        clus
vv       FSTL1 MUTATED FSTL1 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D279V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL1 MUTATED      4    2
  FSTL1 WILD-TYPE  103  115
        clus
vv       FSTL1 MUTATED FSTL1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
D279V5, multiclass
                                clus
vv                               FSTL1 MUTATED FSTL1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D279V6, multiclass
    clus
vv   FSTL1 MUTATED FSTL1 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             5             145
  T4             1              16
D279V7, multiclass
    clus
vv   FSTL1 MUTATED FSTL1 WILD-TYPE
  N0             4             130
  N1             2              42
  N2             0              46
D279V8, multiclass
     clus
vv    FSTL1 MUTATED FSTL1 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D279V9, multiclass
     clus
vv    FSTL1 MUTATED FSTL1 WILD-TYPE
  I               0              48
  II              4              78
  III             2              58
  IV              0              29

Clustering(280) Variable = MRGPRX1 MUTATION ANALYSIS
D280V1, survival
                   sevent
clus2                 0   1
  MRGPRX1 MUTATED     3   1
  MRGPRX1 WILD-TYPE 103  13
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                4               116 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                1                13 
$`MRGPRX1 MUTATED`
TCGA-AA-3679 TCGA-AA-A00N TCGA-AA-A02F TCGA-AG-4008 
        0.99         4.01        39.95         1.02 

$`MRGPRX1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
             0.99              0.92 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
            39.95             72.07 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 40.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
[1] "hr=" "2"  
D280V2, continuous
D280V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MRGPRX1 MUTATED      5    1
  MRGPRX1 WILD-TYPE  149   67
        clus
vv       MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  COLON                5               149
  RECTUM               1                67
D280V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MRGPRX1 MUTATED      2    4
  MRGPRX1 WILD-TYPE  105  113
        clus
vv       MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  FEMALE               2               105
  MALE                 4               113
D280V5, multiclass
                                clus
vv                               MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D280V6, multiclass
    clus
vv   MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               4               146
  T4               1                16
D280V7, multiclass
    clus
vv   MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  N0               3               131
  N1               1                43
  N2               2                44
D280V8, multiclass
     clus
vv    MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  M0                4               185
  M1                2                29
  M1A               0                 1
D280V9, multiclass
     clus
vv    MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  I                 0                48
  II                3                79
  III               1                59
  IV                2                27

Clustering(281) Variable = RHOA MUTATION ANALYSIS
D281V1, survival
                sevent
clus2              0   1
  RHOA MUTATED     2   1
  RHOA WILD-TYPE 104  13
  RHOA MUTATED RHOA WILD-TYPE 
             3            117 
  RHOA MUTATED RHOA WILD-TYPE 
             1             13 
$`RHOA MUTATED`
TCGA-AA-A01P TCGA-AA-A01R TCGA-AG-3892 
       38.07        35.01         1.02 

$`RHOA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  RHOA MUTATED RHOA WILD-TYPE 
          1.02           0.92 
  RHOA MUTATED RHOA WILD-TYPE 
         38.07          72.07 
  RHOA MUTATED RHOA WILD-TYPE 
         35.01          10.92 
[1] "1.0 - 38.1 (35.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
[1] "hr=" "2.4"
D281V2, continuous
D281V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      4    1
  RHOA WILD-TYPE  150   67
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  COLON             4            150
  RECTUM            1             67
D281V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      3    2
  RHOA WILD-TYPE  104  115
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            3            104
  MALE              2            115
D281V5, multiclass
                                clus
vv                               RHOA MUTATED RHOA WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D281V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            1              8
  T2            0             47
  T3            4            146
  T4            0             17
D281V7, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            2            132
  N1            2             42
  N2            1             45
D281V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  M0             4            185
  M1             1             30
  M1A            0              1
D281V9, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              1             47
  II             1             81
  III            2             58
  IV             1             28

Clustering(282) Variable = RPE65 MUTATION ANALYSIS
D282V1, survival
                 sevent
clus2               0   1
  RPE65 MUTATED     6   0
  RPE65 WILD-TYPE 100  14
  RPE65 MUTATED RPE65 WILD-TYPE 
              6             114 
  RPE65 MUTATED RPE65 WILD-TYPE 
              0              14 
$`RPE65 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A02O TCGA-AF-2692 TCGA-AG-3581 TCGA-AG-A002 
        1.02        20.98         0.92        13.55         1.02        20.94 

$`RPE65 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  RPE65 MUTATED RPE65 WILD-TYPE 
           0.92            0.92 
  RPE65 MUTATED RPE65 WILD-TYPE 
          20.98           72.07 
  RPE65 MUTATED RPE65 WILD-TYPE 
          7.285          10.950 
[1] "0.9 - 21.0 (7.3)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE"   "RPE65 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RPE65 WILD-TYPE"   "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RPE65 MUTATED" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" "RPE65 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D282V2, continuous
D282V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPE65 MUTATED      5    2
  RPE65 WILD-TYPE  149   66
        clus
vv       RPE65 MUTATED RPE65 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D282V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPE65 MUTATED      4    4
  RPE65 WILD-TYPE  103  113
        clus
vv       RPE65 MUTATED RPE65 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D282V5, multiclass
                                clus
vv                               RPE65 MUTATED RPE65 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D282V6, multiclass
    clus
vv   RPE65 MUTATED RPE65 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             2              15
D282V7, multiclass
    clus
vv   RPE65 MUTATED RPE65 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             0              46
D282V8, multiclass
     clus
vv    RPE65 MUTATED RPE65 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D282V9, multiclass
     clus
vv    RPE65 MUTATED RPE65 WILD-TYPE
  I               2              46
  II              5              77
  III             0              60
  IV              0              29

Clustering(283) Variable = ZNF648 MUTATION ANALYSIS
D283V1, survival
                  sevent
clus2                0   1
  ZNF648 MUTATED     5   1
  ZNF648 WILD-TYPE 101  13
  ZNF648 MUTATED ZNF648 WILD-TYPE 
               6              114 
  ZNF648 MUTATED ZNF648 WILD-TYPE 
               1               13 
$`ZNF648 MUTATED`
TCGA-AA-3518 TCGA-AA-3710 TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AG-3726 
        1.02         1.02        20.98        38.07         1.02         1.02 

$`ZNF648 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF648 MUTATED ZNF648 WILD-TYPE 
            1.02             0.92 
  ZNF648 MUTATED ZNF648 WILD-TYPE 
           38.07            72.07 
  ZNF648 MUTATED ZNF648 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE"   "ZNF648 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF648 WILD-TYPE"   "ZNF648 MUTATED" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" "ZNF648 WILD-TYPE" 
[1] "hr=" "1.9"
D283V2, continuous
D283V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF648 MUTATED      7    2
  ZNF648 WILD-TYPE  147   66
        clus
vv       ZNF648 MUTATED ZNF648 WILD-TYPE
  COLON               7              147
  RECTUM              2               66
D283V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF648 MUTATED      8    1
  ZNF648 WILD-TYPE   99  116
        clus
vv       ZNF648 MUTATED ZNF648 WILD-TYPE
  FEMALE              8               99
  MALE                1              116
D283V5, multiclass
                                clus
vv                               ZNF648 MUTATED ZNF648 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D283V6, multiclass
    clus
vv   ZNF648 MUTATED ZNF648 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              7              143
  T4              1               16
D283V7, multiclass
    clus
vv   ZNF648 MUTATED ZNF648 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              1               45
D283V8, multiclass
     clus
vv    ZNF648 MUTATED ZNF648 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D283V9, multiclass
     clus
vv    ZNF648 MUTATED ZNF648 WILD-TYPE
  I                1               47
  II               4               78
  III              4               56
  IV               0               29

Clustering(284) Variable = MUC16 MUTATION ANALYSIS
D284V1, survival
                 sevent
clus2              0  1
  MUC16 MUTATED   24  3
  MUC16 WILD-TYPE 82 11
  MUC16 MUTATED MUC16 WILD-TYPE 
             27              93 
  MUC16 MUTATED MUC16 WILD-TYPE 
              3              11 
$`MUC16 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3844 
        9.14         1.02         0.99         0.99         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01P 
        1.02         0.99         4.01        20.98        12.00        38.07 
TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A01Y 
       35.01         1.02        20.94        25.94        17.03        63.98 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A036 
        1.94        61.94        72.07 

$`MUC16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3818 TCGA-AA-3842 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3846 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         1.02        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       21.99        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A014 
        1.02         1.02        13.91         6.02        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        12.00        70.03        10.98        49.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       38.93        40.96        38.01 

  MUC16 MUTATED MUC16 WILD-TYPE 
           0.92            0.92 
  MUC16 MUTATED MUC16 WILD-TYPE 
          72.07           70.03 
  MUC16 MUTATED MUC16 WILD-TYPE 
           1.02           12.72 
[1] "0.9 - 72.1 (1.0)"  "0.9 - 70.0 (12.7)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
[1] "hr=" "1"  
D284V2, continuous
D284V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED     28   10
  MUC16 WILD-TYPE  126   58
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  COLON             28             126
  RECTUM            10              58
D284V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED     18   20
  MUC16 WILD-TYPE   89   97
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  FEMALE            18              89
  MALE              20              97
D284V5, multiclass
                                clus
vv                               MUC16 MUTATED MUC16 WILD-TYPE
  COLON ADENOCARCINOMA                      19             109
  COLON MUCINOUS ADENOCARCINOMA              8              16
  RECTAL ADENOCARCINOMA                     10              47
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D284V6, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  T1             1               8
  T2            10              37
  T3            24             126
  T4             3              14
D284V7, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  N0            27             107
  N1             4              40
  N2             7              39
D284V8, multiclass
     clus
vv    MUC16 MUTATED MUC16 WILD-TYPE
  M0             36             153
  M1              1              30
  M1A             0               1
D284V9, multiclass
     clus
vv    MUC16 MUTATED MUC16 WILD-TYPE
  I               9              39
  II             17              65
  III            10              50
  IV              1              28

Clustering(285) Variable = P2RY14 MUTATION ANALYSIS
D285V1, survival
                  sevent
clus2                0   1
  P2RY14 MUTATED     3   0
  P2RY14 WILD-TYPE 103  14
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               3              117 
  P2RY14 MUTATED P2RY14 WILD-TYPE 
               0               14 
$`P2RY14 MUTATED`
TCGA-AA-A00A TCGA-AA-A03J TCGA-AG-A002 
       18.02        40.93        20.94 

$`P2RY14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        18.02        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  P2RY14 MUTATED P2RY14 WILD-TYPE 
           18.02             0.92 
  P2RY14 MUTATED P2RY14 WILD-TYPE 
           40.93            72.07 
  P2RY14 MUTATED P2RY14 WILD-TYPE 
           20.94            10.62 
[1] "18.0 - 40.9 (20.9)" "0.9 - 72.1 (10.6)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE"   "P2RY14 MUTATED" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "P2RY14 MUTATED" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" "P2RY14 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D285V2, continuous
D285V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY14 MUTATED      4    2
  P2RY14 WILD-TYPE  150   66
        clus
vv       P2RY14 MUTATED P2RY14 WILD-TYPE
  COLON               4              150
  RECTUM              2               66
D285V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY14 MUTATED      2    4
  P2RY14 WILD-TYPE  105  113
        clus
vv       P2RY14 MUTATED P2RY14 WILD-TYPE
  FEMALE              2              105
  MALE                4              113
D285V5, multiclass
                                clus
vv                               P2RY14 MUTATED P2RY14 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D285V6, multiclass
    clus
vv   P2RY14 MUTATED P2RY14 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              0               17
D285V7, multiclass
    clus
vv   P2RY14 MUTATED P2RY14 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              0               46
D285V8, multiclass
     clus
vv    P2RY14 MUTATED P2RY14 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D285V9, multiclass
     clus
vv    P2RY14 MUTATED P2RY14 WILD-TYPE
  I                2               46
  II               4               78
  III              0               60
  IV               0               29

Clustering(286) Variable = KIAA2022 MUTATION ANALYSIS
D286V1, survival
                    sevent
clus2                 0  1
  KIAA2022 MUTATED    8  1
  KIAA2022 WILD-TYPE 98 13
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                 9                111 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
                 1                 13 
$`KIAA2022 MUTATED`
TCGA-AA-3877 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A02W 
        0.99         1.02         4.01        20.98         1.02        40.96 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A02N 
       20.94        17.03        61.94 

$`KIAA2022 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
              0.99               0.92 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
             61.94              72.07 
  KIAA2022 MUTATED KIAA2022 WILD-TYPE 
             17.03              10.92 
[1] "1.0 - 61.9 (17.0)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "KIAA2022 MUTATED" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE"   "KIAA2022 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" "KIAA2022 WILD-TYPE" 
[1] "hr=" "1.5"
D286V2, continuous
D286V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2022 MUTATED     10    5
  KIAA2022 WILD-TYPE  144   63
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  COLON                10                144
  RECTUM                5                 63
D286V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA2022 MUTATED      9    6
  KIAA2022 WILD-TYPE   98  111
        clus
vv       KIAA2022 MUTATED KIAA2022 WILD-TYPE
  FEMALE                9                 98
  MALE                  6                111
D286V5, multiclass
                                clus
vv                               KIAA2022 MUTATED KIAA2022 WILD-TYPE
  COLON ADENOCARCINOMA                          8                120
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         5                 52
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D286V6, multiclass
    clus
vv   KIAA2022 MUTATED KIAA2022 WILD-TYPE
  T1                1                  8
  T2                3                 44
  T3                7                143
  T4                4                 13
D286V7, multiclass
    clus
vv   KIAA2022 MUTATED KIAA2022 WILD-TYPE
  N0               11                123
  N1                3                 41
  N2                1                 45
D286V8, multiclass
     clus
vv    KIAA2022 MUTATED KIAA2022 WILD-TYPE
  M0                13                176
  M1                 1                 30
  M1A                0                  1
D286V9, multiclass
     clus
vv    KIAA2022 MUTATED KIAA2022 WILD-TYPE
  I                  3                 45
  II                 7                 75
  III                3                 57
  IV                 1                 28

Clustering(287) Variable = NLGN4X MUTATION ANALYSIS
D287V1, survival
                  sevent
clus2               0  1
  NLGN4X MUTATED    8  0
  NLGN4X WILD-TYPE 98 14
  NLGN4X MUTATED NLGN4X WILD-TYPE 
               8              112 
  NLGN4X MUTATED NLGN4X WILD-TYPE 
               0               14 
$`NLGN4X MUTATED`
TCGA-AA-3710 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01K 
        1.02         0.99         0.99        17.00        20.98        13.02 
TCGA-AG-4008 TCGA-AG-A00H 
        1.02        25.94 

$`NLGN4X WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  NLGN4X MUTATED NLGN4X WILD-TYPE 
            0.99             0.92 
  NLGN4X MUTATED NLGN4X WILD-TYPE 
           25.94            72.07 
  NLGN4X MUTATED NLGN4X WILD-TYPE 
            7.02            10.95 
[1] "1.0 - 25.9 (7.0)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NLGN4X MUTATED" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE"   "NLGN4X MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" "NLGN4X WILD-TYPE" 
[1] "hr="     "2.7e+07"
D287V2, continuous
D287V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NLGN4X MUTATED      7    3
  NLGN4X WILD-TYPE  147   65
        clus
vv       NLGN4X MUTATED NLGN4X WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D287V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NLGN4X MUTATED      6    4
  NLGN4X WILD-TYPE  101  113
        clus
vv       NLGN4X MUTATED NLGN4X WILD-TYPE
  FEMALE              6              101
  MALE                4              113
D287V5, multiclass
                                clus
vv                               NLGN4X MUTATED NLGN4X WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D287V6, multiclass
    clus
vv   NLGN4X MUTATED NLGN4X WILD-TYPE
  T1              0                9
  T2              0               47
  T3              9              141
  T4              1               16
D287V7, multiclass
    clus
vv   NLGN4X MUTATED NLGN4X WILD-TYPE
  N0              6              128
  N1              3               41
  N2              1               45
D287V8, multiclass
     clus
vv    NLGN4X MUTATED NLGN4X WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
D287V9, multiclass
     clus
vv    NLGN4X MUTATED NLGN4X WILD-TYPE
  I                0               48
  II               6               76
  III              4               56
  IV               0               29

Clustering(288) Variable = OR52J3 MUTATION ANALYSIS
D288V1, survival
                  sevent
clus2                0   1
  OR52J3 MUTATED     1   1
  OR52J3 WILD-TYPE 105  13
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               2              118 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               1               13 
$`OR52J3 MUTATED`
TCGA-AA-A00N TCGA-AA-A02F 
        4.01        39.95 

$`OR52J3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  OR52J3 MUTATED OR52J3 WILD-TYPE 
            4.01             0.92 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
           39.95            72.07 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
           21.98            10.95 
[1] "4.0 - 40.0 (22.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
[1] "Remove cluster labels:" "OR52J3 MUTATED"        
clus
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
D288V2, continuous
D288V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      5    0
  OR52J3 WILD-TYPE  149   68
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  COLON               5              149
  RECTUM              0               68
D288V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      3    2
  OR52J3 WILD-TYPE  104  115
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  FEMALE              3              104
  MALE                2              115
D288V5, multiclass
                                clus
vv                               OR52J3 MUTATED OR52J3 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D288V6, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              2              148
  T4              3               14
D288V7, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              1               45
D288V8, multiclass
     clus
vv    OR52J3 MUTATED OR52J3 WILD-TYPE
  M0               3              186
  M1               2               29
  M1A              0                1
D288V9, multiclass
     clus
vv    OR52J3 MUTATED OR52J3 WILD-TYPE
  I                0               48
  II               3               79
  III              0               60
  IV               2               27

Clustering(289) Variable = POU4F2 MUTATION ANALYSIS
D289V1, survival
                  sevent
clus2                0   1
  POU4F2 MUTATED     4   1
  POU4F2 WILD-TYPE 102  13
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               5              115 
  POU4F2 MUTATED POU4F2 WILD-TYPE 
               1               13 
$`POU4F2 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A02Y 
        0.99         0.99        30.02         4.01        39.95 

$`POU4F2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  POU4F2 MUTATED POU4F2 WILD-TYPE 
            0.99             0.92 
  POU4F2 MUTATED POU4F2 WILD-TYPE 
           39.95            72.07 
  POU4F2 MUTATED POU4F2 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 40.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE"   "POU4F2 MUTATED" "POU4F2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" "POU4F2 WILD-TYPE" 
[1] "hr=" "1.5"
D289V2, continuous
D289V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU4F2 MUTATED      8    1
  POU4F2 WILD-TYPE  146   67
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D289V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POU4F2 MUTATED      4    5
  POU4F2 WILD-TYPE  103  112
        clus
vv       POU4F2 MUTATED POU4F2 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D289V5, multiclass
                                clus
vv                               POU4F2 MUTATED POU4F2 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D289V6, multiclass
    clus
vv   POU4F2 MUTATED POU4F2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              2               15
D289V7, multiclass
    clus
vv   POU4F2 MUTATED POU4F2 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              0               46
D289V8, multiclass
     clus
vv    POU4F2 MUTATED POU4F2 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D289V9, multiclass
     clus
vv    POU4F2 MUTATED POU4F2 WILD-TYPE
  I                2               46
  II               6               76
  III              1               59
  IV               0               29

Clustering(290) Variable = HSPA1L MUTATION ANALYSIS
D290V1, survival
                  sevent
clus2                0   1
  HSPA1L MUTATED     5   1
  HSPA1L WILD-TYPE 101  13
  HSPA1L MUTATED HSPA1L WILD-TYPE 
               6              114 
  HSPA1L MUTATED HSPA1L WILD-TYPE 
               1               13 
$`HSPA1L MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-A010 TCGA-AA-A024 TCGA-AF-2692 
       16.54        14.70         0.99        20.98        39.06        13.55 

$`HSPA1L WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3913 
       16.31         0.95        15.85        10.62        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  HSPA1L MUTATED HSPA1L WILD-TYPE 
            0.99             0.92 
  HSPA1L MUTATED HSPA1L WILD-TYPE 
           39.06            72.07 
  HSPA1L MUTATED HSPA1L WILD-TYPE 
          15.620           10.505 
[1] "1.0 - 39.1 (15.6)" "0.9 - 72.1 (10.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE"   "HSPA1L MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"HSPA1L WILD-TYPE"   "HSPA1L MUTATED" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" "HSPA1L WILD-TYPE" 
[1] "hr=" "1.1"
D290V2, continuous
D290V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HSPA1L MUTATED      8    0
  HSPA1L WILD-TYPE  146   68
        clus
vv       HSPA1L MUTATED HSPA1L WILD-TYPE
  COLON               8              146
  RECTUM              0               68
D290V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HSPA1L MUTATED      6    3
  HSPA1L WILD-TYPE  101  114
        clus
vv       HSPA1L MUTATED HSPA1L WILD-TYPE
  FEMALE              6              101
  MALE                3              114
D290V5, multiclass
                                clus
vv                               HSPA1L MUTATED HSPA1L WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D290V6, multiclass
    clus
vv   HSPA1L MUTATED HSPA1L WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
D290V7, multiclass
    clus
vv   HSPA1L MUTATED HSPA1L WILD-TYPE
  N0              8              126
  N1              1               43
  N2              0               46
D290V8, multiclass
     clus
vv    HSPA1L MUTATED HSPA1L WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D290V9, multiclass
     clus
vv    HSPA1L MUTATED HSPA1L WILD-TYPE
  I                2               46
  II               6               76
  III              1               59
  IV               0               29

Clustering(291) Variable = C4ORF37 MUTATION ANALYSIS
D291V1, survival
                   sevent
clus2                 0   1
  C4ORF37 MUTATED     5   0
  C4ORF37 WILD-TYPE 101  14
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                5               115 
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
                0                14 
$`C4ORF37 MUTATED`
TCGA-AA-3715 TCGA-AA-A010 TCGA-AA-A02Y TCGA-AG-3892 TCGA-AG-A002 
        0.99        20.98        39.95         1.02        20.94 

$`C4ORF37 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
             0.99              0.92 
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
            39.95             72.07 
  C4ORF37 MUTATED C4ORF37 WILD-TYPE 
            20.94             10.92 
[1] "1.0 - 40.0 (20.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C4ORF37 WILD-TYPE"   "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C4ORF37 MUTATED" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" "C4ORF37 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D291V2, continuous
D291V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF37 MUTATED      5    3
  C4ORF37 WILD-TYPE  149   65
        clus
vv       C4ORF37 MUTATED C4ORF37 WILD-TYPE
  COLON                5               149
  RECTUM               3                65
D291V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C4ORF37 MUTATED      3    5
  C4ORF37 WILD-TYPE  104  112
        clus
vv       C4ORF37 MUTATED C4ORF37 WILD-TYPE
  FEMALE               3               104
  MALE                 5               112
D291V5, multiclass
                                clus
vv                               C4ORF37 MUTATED C4ORF37 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D291V6, multiclass
    clus
vv   C4ORF37 MUTATED C4ORF37 WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               4               146
  T4               1                16
D291V7, multiclass
    clus
vv   C4ORF37 MUTATED C4ORF37 WILD-TYPE
  N0               7               127
  N1               1                43
  N2               0                46
D291V8, multiclass
     clus
vv    C4ORF37 MUTATED C4ORF37 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D291V9, multiclass
     clus
vv    C4ORF37 MUTATED C4ORF37 WILD-TYPE
  I                 3                45
  II                4                78
  III               1                59
  IV                0                29

Clustering(292) Variable = F13A1 MUTATION ANALYSIS
D292V1, survival
                 sevent
clus2               0   1
  F13A1 MUTATED     3   1
  F13A1 WILD-TYPE 103  13
  F13A1 MUTATED F13A1 WILD-TYPE 
              4             116 
  F13A1 MUTATED F13A1 WILD-TYPE 
              1              13 
$`F13A1 MUTATED`
TCGA-AA-3518 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02         4.01        20.98 

$`F13A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  F13A1 MUTATED F13A1 WILD-TYPE 
           1.02            0.92 
  F13A1 MUTATED F13A1 WILD-TYPE 
          20.98           72.07 
  F13A1 MUTATED F13A1 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"F13A1 WILD-TYPE"   "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "F13A1 MUTATED" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" "F13A1 WILD-TYPE" 
[1] "hr=" "3.3"
D292V2, continuous
D292V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      8    2
  F13A1 WILD-TYPE  146   66
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D292V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  F13A1 MUTATED      5    5
  F13A1 WILD-TYPE  102  112
        clus
vv       F13A1 MUTATED F13A1 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
D292V5, multiclass
                                clus
vv                               F13A1 MUTATED F13A1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D292V6, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             7             143
  T4             3              14
D292V7, multiclass
    clus
vv   F13A1 MUTATED F13A1 WILD-TYPE
  N0             7             127
  N1             3              41
  N2             0              46
D292V8, multiclass
     clus
vv    F13A1 MUTATED F13A1 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D292V9, multiclass
     clus
vv    F13A1 MUTATED F13A1 WILD-TYPE
  I               0              48
  II              7              75
  III             2              58
  IV              1              28

Clustering(293) Variable = PTN MUTATION ANALYSIS
D293V1, survival
               sevent
clus2             0   1
  PTN MUTATED     4   0
  PTN WILD-TYPE 102  14
  PTN MUTATED PTN WILD-TYPE 
            4           116 
  PTN MUTATED PTN WILD-TYPE 
            0            14 
$`PTN MUTATED`
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A01R TCGA-AG-A002 
        0.99        30.02        35.01        20.94 

$`PTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PTN MUTATED PTN WILD-TYPE 
         0.99          0.92 
  PTN MUTATED PTN WILD-TYPE 
        35.01         72.07 
  PTN MUTATED PTN WILD-TYPE 
        25.48         10.77 
[1] "1.0 - 35.0 (25.5)" "0.9 - 72.1 (10.8)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D293V2, continuous
D293V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      4    1
  PTN WILD-TYPE  150   67
        clus
vv       PTN MUTATED PTN WILD-TYPE
  COLON            4           150
  RECTUM           1            67
D293V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      1    4
  PTN WILD-TYPE  106  113
        clus
vv       PTN MUTATED PTN WILD-TYPE
  FEMALE           1           106
  MALE             4           113
D293V5, multiclass
                                clus
vv                               PTN MUTATED PTN WILD-TYPE
  COLON ADENOCARCINOMA                     2           126
  COLON MUCINOUS ADENOCARCINOMA            2            22
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D293V6, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  T1           0             9
  T2           3            44
  T3           2           148
  T4           0            17
D293V7, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  N0           4           130
  N1           0            44
  N2           1            45
D293V8, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  M0            5           184
  M1            0            31
  M1A           0             1
D293V9, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  I             3            45
  II            1            81
  III           1            59
  IV            0            29

Clustering(294) Variable = ADAMTS5 MUTATION ANALYSIS
D294V1, survival
                   sevent
clus2                 0   1
  ADAMTS5 MUTATED     4   1
  ADAMTS5 WILD-TYPE 102  13
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                5               115 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                1                13 
$`ADAMTS5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A004 TCGA-AA-A00N TCGA-AG-3892 
        1.02         0.99        13.94         4.01         1.02 

$`ADAMTS5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02         0.99        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
             0.99              0.92 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
            13.94             72.07 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 13.9 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
[1] "hr=" "3.8"
D294V2, continuous
D294V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED     11    1
  ADAMTS5 WILD-TYPE  143   67
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  COLON               11               143
  RECTUM               1                67
D294V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      7    5
  ADAMTS5 WILD-TYPE  100  112
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  FEMALE               7               100
  MALE                 5               112
D294V5, multiclass
                                clus
vv                               ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D294V6, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  T1               1                 8
  T2               0                47
  T3               9               141
  T4               2                15
D294V7, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               2                44
D294V8, multiclass
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  M0               10               179
  M1                2                29
  M1A               0                 1
D294V9, multiclass
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  I                 1                47
  II                8                74
  III               1                59
  IV                2                27

Clustering(295) Variable = C20ORF71 MUTATION ANALYSIS
D295V1, survival
                    sevent
clus2                  0   1
  C20ORF71 MUTATED     2   0
  C20ORF71 WILD-TYPE 104  14
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 2                118 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 0                 14 
$`C20ORF71 MUTATED`
TCGA-AA-3854 TCGA-AG-A002 
        1.02        20.94 

$`C20ORF71 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
              1.02               0.92 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
             20.94              72.07 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
             10.98              10.95 
[1] "1.0 - 20.9 (11.0)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
[1] "Remove cluster labels:" "C20ORF71 MUTATED"      
clus
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3877 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AG-A036 
"C20ORF71 WILD-TYPE" 
D295V2, continuous
D295V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF71 MUTATED      4    1
  C20ORF71 WILD-TYPE  150   67
        clus
vv       C20ORF71 MUTATED C20ORF71 WILD-TYPE
  COLON                 4                150
  RECTUM                1                 67
D295V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF71 MUTATED      2    3
  C20ORF71 WILD-TYPE  105  114
        clus
vv       C20ORF71 MUTATED C20ORF71 WILD-TYPE
  FEMALE                2                105
  MALE                  3                114
D295V5, multiclass
                                clus
vv                               C20ORF71 MUTATED C20ORF71 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D295V6, multiclass
    clus
vv   C20ORF71 MUTATED C20ORF71 WILD-TYPE
  T1                0                  9
  T2                3                 44
  T3                2                148
  T4                0                 17
D295V7, multiclass
    clus
vv   C20ORF71 MUTATED C20ORF71 WILD-TYPE
  N0                4                130
  N1                1                 43
  N2                0                 46
D295V8, multiclass
     clus
vv    C20ORF71 MUTATED C20ORF71 WILD-TYPE
  M0                 5                184
  M1                 0                 31
  M1A                0                  1
D295V9, multiclass
     clus
vv    C20ORF71 MUTATED C20ORF71 WILD-TYPE
  I                  2                 46
  II                 2                 80
  III                1                 59
  IV                 0                 29

Clustering(296) Variable = KCNB2 MUTATION ANALYSIS
D296V1, survival
                 sevent
clus2              0  1
  KCNB2 MUTATED    7  2
  KCNB2 WILD-TYPE 99 12
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              9             111 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
              2              12 
$`KCNB2 MUTATED`
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3587 
        0.99         1.02         4.01        20.98        35.01         1.02 
TCGA-AG-A002 TCGA-AG-A00H TCGA-AG-A026 
       20.94        25.94         1.94 

$`KCNB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  KCNB2 MUTATED KCNB2 WILD-TYPE 
           0.99            0.92 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
          35.01           72.07 
  KCNB2 MUTATED KCNB2 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "KCNB2 MUTATED"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNB2 MUTATED" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE"   "KCNB2 MUTATED" "KCNB2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" "KCNB2 WILD-TYPE" 
[1] "hr=" "2.5"
D296V2, continuous
D296V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      6    5
  KCNB2 WILD-TYPE  148   63
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON              6             148
  RECTUM             5              63
D296V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNB2 MUTATED      3    8
  KCNB2 WILD-TYPE  104  109
        clus
vv       KCNB2 MUTATED KCNB2 WILD-TYPE
  FEMALE             3             104
  MALE               8             109
D296V5, multiclass
                                clus
vv                               KCNB2 MUTATED KCNB2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D296V6, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             4             146
  T4             4              13
D296V7, multiclass
    clus
vv   KCNB2 MUTATED KCNB2 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             3              43
D296V8, multiclass
     clus
vv    KCNB2 MUTATED KCNB2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
D296V9, multiclass
     clus
vv    KCNB2 MUTATED KCNB2 WILD-TYPE
  I               3              45
  II              5              77
  III             2              58
  IV              1              28

Clustering(297) Variable = SCN11A MUTATION ANALYSIS
D297V1, survival
                  sevent
clus2               0  1
  SCN11A MUTATED    9  1
  SCN11A WILD-TYPE 97 13
  SCN11A MUTATED SCN11A WILD-TYPE 
              10              110 
  SCN11A MUTATED SCN11A WILD-TYPE 
               1               13 
$`SCN11A MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        18.02         4.01        17.00        20.98 
TCGA-AA-A01R TCGA-AA-A01Z TCGA-AG-3892 TCGA-AG-A002 
       35.01        20.98         1.02        20.94 

$`SCN11A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
        1.02         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  SCN11A MUTATED SCN11A WILD-TYPE 
            0.99             0.92 
  SCN11A MUTATED SCN11A WILD-TYPE 
           35.01            72.07 
  SCN11A MUTATED SCN11A WILD-TYPE 
           17.51            10.77 
[1] "1.0 - 35.0 (17.5)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
[1] "hr=" "1.2"
D297V2, continuous
D297V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN11A MUTATED     15    2
  SCN11A WILD-TYPE  139   66
        clus
vv       SCN11A MUTATED SCN11A WILD-TYPE
  COLON              15              139
  RECTUM              2               66
D297V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN11A MUTATED      9    8
  SCN11A WILD-TYPE   98  109
        clus
vv       SCN11A MUTATED SCN11A WILD-TYPE
  FEMALE              9               98
  MALE                8              109
D297V5, multiclass
                                clus
vv                               SCN11A MUTATED SCN11A WILD-TYPE
  COLON ADENOCARCINOMA                       12              116
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D297V6, multiclass
    clus
vv   SCN11A MUTATED SCN11A WILD-TYPE
  T1              1                8
  T2              3               44
  T3             10              140
  T4              3               14
D297V7, multiclass
    clus
vv   SCN11A MUTATED SCN11A WILD-TYPE
  N0             13              121
  N1              3               41
  N2              1               45
D297V8, multiclass
     clus
vv    SCN11A MUTATED SCN11A WILD-TYPE
  M0              16              173
  M1               0               31
  M1A              0                1
D297V9, multiclass
     clus
vv    SCN11A MUTATED SCN11A WILD-TYPE
  I                2               46
  II              10               72
  III              4               56
  IV               0               29

Clustering(298) Variable = SLCO6A1 MUTATION ANALYSIS
D298V1, survival
                   sevent
clus2                 0   1
  SLCO6A1 MUTATED     4   1
  SLCO6A1 WILD-TYPE 102  13
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                5               115 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
                1                13 
$`SLCO6A1 MUTATED`
TCGA-AA-3518 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A014 
        1.02         0.99         4.01        20.98        15.91 

$`SLCO6A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
             0.99              0.92 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
            20.98             72.07 
  SLCO6A1 MUTATED SLCO6A1 WILD-TYPE 
             4.01             10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE"   "SLCO6A1 MUTATED" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" "SLCO6A1 WILD-TYPE" 
[1] "hr=" "2.5"
D298V2, continuous
D298V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      8    2
  SLCO6A1 WILD-TYPE  146   66
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D298V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO6A1 MUTATED      7    3
  SLCO6A1 WILD-TYPE  100  114
        clus
vv       SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  FEMALE               7               100
  MALE                 3               114
D298V5, multiclass
                                clus
vv                               SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D298V6, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               5               145
  T4               3                14
D298V7, multiclass
    clus
vv   SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               0                46
D298V8, multiclass
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D298V9, multiclass
     clus
vv    SLCO6A1 MUTATED SLCO6A1 WILD-TYPE
  I                 2                46
  II                7                75
  III               1                59
  IV                0                29

Clustering(299) Variable = ZNF470 MUTATION ANALYSIS
D299V1, survival
                  sevent
clus2                0   1
  ZNF470 MUTATED     4   0
  ZNF470 WILD-TYPE 102  14
  ZNF470 MUTATED ZNF470 WILD-TYPE 
               4              116 
  ZNF470 MUTATED ZNF470 WILD-TYPE 
               0               14 
$`ZNF470 MUTATED`
TCGA-AA-A00A TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       18.02        20.98         1.02        20.94 

$`ZNF470 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ZNF470 MUTATED ZNF470 WILD-TYPE 
            1.02             0.92 
  ZNF470 MUTATED ZNF470 WILD-TYPE 
           20.98            72.07 
  ZNF470 MUTATED ZNF470 WILD-TYPE 
           19.48            10.77 
[1] "1.0 - 21.0 (19.5)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF470 WILD-TYPE"   "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF470 MUTATED" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" "ZNF470 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D299V2, continuous
D299V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF470 MUTATED      5    3
  ZNF470 WILD-TYPE  149   65
        clus
vv       ZNF470 MUTATED ZNF470 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D299V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF470 MUTATED      5    3
  ZNF470 WILD-TYPE  102  114
        clus
vv       ZNF470 MUTATED ZNF470 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D299V5, multiclass
                                clus
vv                               ZNF470 MUTATED ZNF470 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D299V6, multiclass
    clus
vv   ZNF470 MUTATED ZNF470 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              2               15
D299V7, multiclass
    clus
vv   ZNF470 MUTATED ZNF470 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              0               46
D299V8, multiclass
     clus
vv    ZNF470 MUTATED ZNF470 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D299V9, multiclass
     clus
vv    ZNF470 MUTATED ZNF470 WILD-TYPE
  I                3               45
  II               5               77
  III              0               60
  IV               0               29

Clustering(300) Variable = C12ORF54 MUTATION ANALYSIS
D300V1, survival
                    sevent
clus2                  0   1
  C12ORF54 MUTATED     2   0
  C12ORF54 WILD-TYPE 104  14
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 2                118 
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 0                 14 
$`C12ORF54 MUTATED`
TCGA-AA-3977 TCGA-AG-3892 
        1.02         1.02 

$`C12ORF54 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
              1.02               0.92 
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
              1.02              72.07 
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
              1.02              11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE"   "C12ORF54 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "C12ORF54 MUTATED" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
[1] "Remove cluster labels:" "C12ORF54 MUTATED"      
clus
  C12ORF54 MUTATED C12ORF54 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3986 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3893 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" "C12ORF54 WILD-TYPE" 
        TCGA-AG-A036 
"C12ORF54 WILD-TYPE" 
D300V2, continuous
D300V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF54 MUTATED      3    1
  C12ORF54 WILD-TYPE  151   67
        clus
vv       C12ORF54 MUTATED C12ORF54 WILD-TYPE
  COLON                 3                151
  RECTUM                1                 67
D300V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF54 MUTATED      3    1
  C12ORF54 WILD-TYPE  104  116
        clus
vv       C12ORF54 MUTATED C12ORF54 WILD-TYPE
  FEMALE                3                104
  MALE                  1                116
D300V5, multiclass
                                clus
vv                               C12ORF54 MUTATED C12ORF54 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D300V6, multiclass
    clus
vv   C12ORF54 MUTATED C12ORF54 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3                1                149
  T4                0                 17
D300V7, multiclass
    clus
vv   C12ORF54 MUTATED C12ORF54 WILD-TYPE
  N0                3                131
  N1                1                 43
  N2                0                 46
D300V8, multiclass
     clus
vv    C12ORF54 MUTATED C12ORF54 WILD-TYPE
  M0                 3                186
  M1                 0                 31
  M1A                0                  1
D300V9, multiclass
     clus
vv    C12ORF54 MUTATED C12ORF54 WILD-TYPE
  I                  1                 47
  II                 1                 81
  III                1                 59
  IV                 0                 29

Clustering(301) Variable = OR52A5 MUTATION ANALYSIS
D301V1, survival
                  sevent
clus2               0  1
  OR52A5 MUTATED    7  0
  OR52A5 WILD-TYPE 99 14
  OR52A5 MUTATED OR52A5 WILD-TYPE 
               7              113 
  OR52A5 MUTATED OR52A5 WILD-TYPE 
               0               14 
$`OR52A5 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-A010 TCGA-AA-A01Q TCGA-AG-3892 
        0.99         0.99         1.02        20.98         1.02         1.02 
TCGA-AG-A002 
       20.94 

$`OR52A5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR52A5 MUTATED OR52A5 WILD-TYPE 
            0.99             0.92 
  OR52A5 MUTATED OR52A5 WILD-TYPE 
           20.98            72.07 
  OR52A5 MUTATED OR52A5 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52A5 WILD-TYPE"   "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52A5 MUTATED" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" "OR52A5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D301V2, continuous
D301V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52A5 MUTATED      5    2
  OR52A5 WILD-TYPE  149   66
        clus
vv       OR52A5 MUTATED OR52A5 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D301V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52A5 MUTATED      4    3
  OR52A5 WILD-TYPE  103  114
        clus
vv       OR52A5 MUTATED OR52A5 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D301V5, multiclass
                                clus
vv                               OR52A5 MUTATED OR52A5 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D301V6, multiclass
    clus
vv   OR52A5 MUTATED OR52A5 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              4              146
  T4              1               16
D301V7, multiclass
    clus
vv   OR52A5 MUTATED OR52A5 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D301V8, multiclass
     clus
vv    OR52A5 MUTATED OR52A5 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D301V9, multiclass
     clus
vv    OR52A5 MUTATED OR52A5 WILD-TYPE
  I                2               46
  II               5               77
  III              0               60
  IV               0               29

Clustering(302) Variable = TRPC6 MUTATION ANALYSIS
D302V1, survival
                 sevent
clus2              0  1
  TRPC6 MUTATED    8  0
  TRPC6 WILD-TYPE 98 14
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              8             112 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              0              14 
$`TRPC6 MUTATED`
TCGA-AA-3846 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A01R 
        0.99        18.02        30.02        17.00        20.98        35.01 
TCGA-AG-3999 TCGA-AG-A002 
        1.02        20.94 

$`TRPC6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N 
       13.94        19.00        34.03        18.02        18.02         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TRPC6 MUTATED TRPC6 WILD-TYPE 
           0.99            0.92 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
          35.01           72.07 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
         19.480          10.505 
[1] "1.0 - 35.0 (19.5)" "0.9 - 72.1 (10.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D302V2, continuous
D302V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      8    3
  TRPC6 WILD-TYPE  146   65
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D302V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      5    6
  TRPC6 WILD-TYPE  102  111
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D302V5, multiclass
                                clus
vv                               TRPC6 MUTATED TRPC6 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D302V6, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             9             141
  T4             1              16
D302V7, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             3              43
D302V8, multiclass
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D302V9, multiclass
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  I               1              47
  II              7              75
  III             3              57
  IV              0              29

Clustering(303) Variable = NLRP4 MUTATION ANALYSIS
D303V1, survival
                 sevent
clus2               0   1
  NLRP4 MUTATED     6   1
  NLRP4 WILD-TYPE 100  13
  NLRP4 MUTATED NLRP4 WILD-TYPE 
              7             113 
  NLRP4 MUTATED NLRP4 WILD-TYPE 
              1              13 
$`NLRP4 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-4001 TCGA-AG-A002 
        1.02         4.01        20.98         1.02         1.02        20.94 
TCGA-AG-A01Y 
       63.98 

$`NLRP4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        70.03        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  NLRP4 MUTATED NLRP4 WILD-TYPE 
           1.02            0.92 
  NLRP4 MUTATED NLRP4 WILD-TYPE 
          63.98           72.07 
  NLRP4 MUTATED NLRP4 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 64.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP4 WILD-TYPE"   "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP4 MUTATED" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE"   "NLRP4 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" "NLRP4 WILD-TYPE" 
[1] "hr=" "1.1"
D303V2, continuous
D303V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP4 MUTATED      9    5
  NLRP4 WILD-TYPE  145   63
        clus
vv       NLRP4 MUTATED NLRP4 WILD-TYPE
  COLON              9             145
  RECTUM             5              63
D303V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP4 MUTATED      9    5
  NLRP4 WILD-TYPE   98  112
        clus
vv       NLRP4 MUTATED NLRP4 WILD-TYPE
  FEMALE             9              98
  MALE               5             112
D303V5, multiclass
                                clus
vv                               NLRP4 MUTATED NLRP4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D303V6, multiclass
    clus
vv   NLRP4 MUTATED NLRP4 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             3              14
D303V7, multiclass
    clus
vv   NLRP4 MUTATED NLRP4 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             3              43
D303V8, multiclass
     clus
vv    NLRP4 MUTATED NLRP4 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
D303V9, multiclass
     clus
vv    NLRP4 MUTATED NLRP4 WILD-TYPE
  I               2              46
  II              6              76
  III             3              57
  IV              2              27

Clustering(304) Variable = GABRG2 MUTATION ANALYSIS
D304V1, survival
                  sevent
clus2                0   1
  GABRG2 MUTATED     4   0
  GABRG2 WILD-TYPE 102  14
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               4              116 
  GABRG2 MUTATED GABRG2 WILD-TYPE 
               0               14 
$`GABRG2 MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AG-A002 TCGA-AG-A00Y 
        0.99         1.02        20.94        23.01 

$`GABRG2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 
        1.02         1.02        13.91         6.02        25.94        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  GABRG2 MUTATED GABRG2 WILD-TYPE 
            0.99             0.92 
  GABRG2 MUTATED GABRG2 WILD-TYPE 
           23.01            72.07 
  GABRG2 MUTATED GABRG2 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 23.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE"   "GABRG2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "GABRG2 MUTATED" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" "GABRG2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D304V2, continuous
D304V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG2 MUTATED      6    2
  GABRG2 WILD-TYPE  148   66
        clus
vv       GABRG2 MUTATED GABRG2 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D304V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG2 MUTATED      3    5
  GABRG2 WILD-TYPE  104  112
        clus
vv       GABRG2 MUTATED GABRG2 WILD-TYPE
  FEMALE              3              104
  MALE                5              112
D304V5, multiclass
                                clus
vv                               GABRG2 MUTATED GABRG2 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D304V6, multiclass
    clus
vv   GABRG2 MUTATED GABRG2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
D304V7, multiclass
    clus
vv   GABRG2 MUTATED GABRG2 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              2               44
D304V8, multiclass
     clus
vv    GABRG2 MUTATED GABRG2 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D304V9, multiclass
     clus
vv    GABRG2 MUTATED GABRG2 WILD-TYPE
  I                1               47
  II               4               78
  III              1               59
  IV               1               28

Clustering(305) Variable = OR6T1 MUTATION ANALYSIS
D305V1, survival
                 sevent
clus2               0   1
  OR6T1 MUTATED     3   0
  OR6T1 WILD-TYPE 103  14
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              3             117 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              0              14 
$`OR6T1 MUTATED`
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L 
        1.02        30.02        17.00 

$`OR6T1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  OR6T1 MUTATED OR6T1 WILD-TYPE 
           1.02            0.92 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          30.02           72.07 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          17.00           10.92 
[1] "1.0 - 30.0 (17.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D305V2, continuous
D305V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      6    0
  OR6T1 WILD-TYPE  148   68
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON              6             148
  RECTUM             0              68
D305V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      2    4
  OR6T1 WILD-TYPE  105  113
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D305V5, multiclass
                                clus
vv                               OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D305V6, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
D305V7, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             1              45
D305V8, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  M0              4             185
  M1              1              30
  M1A             0               1
D305V9, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  I               0              48
  II              4              78
  III             0              60
  IV              1              28

Clustering(306) Variable = IDH2 MUTATION ANALYSIS
D306V1, survival
                sevent
clus2              0   1
  IDH2 MUTATED     2   0
  IDH2 WILD-TYPE 104  14
  IDH2 MUTATED IDH2 WILD-TYPE 
             2            118 
  IDH2 MUTATED IDH2 WILD-TYPE 
             0             14 
$`IDH2 MUTATED`
TCGA-AA-3715 TCGA-AA-A01Z 
        0.99        20.98 

$`IDH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  IDH2 MUTATED IDH2 WILD-TYPE 
          0.99           0.92 
  IDH2 MUTATED IDH2 WILD-TYPE 
         20.98          72.07 
  IDH2 MUTATED IDH2 WILD-TYPE 
        10.985         10.950 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3818 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
D306V2, continuous
D306V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      7    0
  IDH2 WILD-TYPE  147   68
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  COLON             7            147
  RECTUM            0             68
D306V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      4    3
  IDH2 WILD-TYPE  103  114
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D306V5, multiclass
                                clus
vv                               IDH2 MUTATED IDH2 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D306V6, multiclass
    clus
vv   IDH2 MUTATED IDH2 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            4            146
  T4            2             15
D306V7, multiclass
    clus
vv   IDH2 MUTATED IDH2 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            0             46
D306V8, multiclass
     clus
vv    IDH2 MUTATED IDH2 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
D306V9, multiclass
     clus
vv    IDH2 MUTATED IDH2 WILD-TYPE
  I              1             47
  II             4             78
  III            1             59
  IV             1             28

Clustering(307) Variable = OR8K1 MUTATION ANALYSIS
D307V1, survival
                 sevent
clus2               0   1
  OR8K1 MUTATED     3   1
  OR8K1 WILD-TYPE 103  13
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              4             116 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
              1              13 
$`OR8K1 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A026 
        1.02        20.98         1.02         1.94 

$`OR8K1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        49.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR8K1 MUTATED OR8K1 WILD-TYPE 
           1.02            0.92 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
          20.98           72.07 
  OR8K1 MUTATED OR8K1 WILD-TYPE 
           1.48           11.49 
[1] "1.0 - 21.0 (1.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE"   "OR8K1 MUTATED" "OR8K1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" "OR8K1 WILD-TYPE" 
[1] "hr=" "3.7"
D307V2, continuous
D307V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K1 MUTATED      4    2
  OR8K1 WILD-TYPE  150   66
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D307V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K1 MUTATED      3    3
  OR8K1 WILD-TYPE  104  114
        clus
vv       OR8K1 MUTATED OR8K1 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D307V5, multiclass
                                clus
vv                               OR8K1 MUTATED OR8K1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D307V6, multiclass
    clus
vv   OR8K1 MUTATED OR8K1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             0             150
  T4             3              14
D307V7, multiclass
    clus
vv   OR8K1 MUTATED OR8K1 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D307V8, multiclass
     clus
vv    OR8K1 MUTATED OR8K1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D307V9, multiclass
     clus
vv    OR8K1 MUTATED OR8K1 WILD-TYPE
  I               2              46
  II              3              79
  III             0              60
  IV              0              29

Clustering(308) Variable = RXFP2 MUTATION ANALYSIS
D308V1, survival
                 sevent
clus2              0  1
  RXFP2 MUTATED    8  0
  RXFP2 WILD-TYPE 98 14
  RXFP2 MUTATED RXFP2 WILD-TYPE 
              8             112 
  RXFP2 MUTATED RXFP2 WILD-TYPE 
              0              14 
$`RXFP2 MUTATED`
TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A010 
        1.02         1.02         1.02        30.02        34.03        20.98 
TCGA-AG-A002 TCGA-AG-A014 
       20.94        15.91 

$`RXFP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        17.03        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  RXFP2 MUTATED RXFP2 WILD-TYPE 
           1.02            0.92 
  RXFP2 MUTATED RXFP2 WILD-TYPE 
          34.03           72.07 
  RXFP2 MUTATED RXFP2 WILD-TYPE 
         18.425          10.770 
[1] "1.0 - 34.0 (18.4)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "RXFP2 MUTATED"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "RXFP2 MUTATED"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "RXFP2 MUTATED"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RXFP2 MUTATED" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE"   "RXFP2 MUTATED" "RXFP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" "RXFP2 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D308V2, continuous
D308V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RXFP2 MUTATED      8    2
  RXFP2 WILD-TYPE  146   66
        clus
vv       RXFP2 MUTATED RXFP2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D308V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RXFP2 MUTATED      3    7
  RXFP2 WILD-TYPE  104  110
        clus
vv       RXFP2 MUTATED RXFP2 WILD-TYPE
  FEMALE             3             104
  MALE               7             110
D308V5, multiclass
                                clus
vv                               RXFP2 MUTATED RXFP2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D308V6, multiclass
    clus
vv   RXFP2 MUTATED RXFP2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             4             146
  T4             2              15
D308V7, multiclass
    clus
vv   RXFP2 MUTATED RXFP2 WILD-TYPE
  N0             7             127
  N1             2              42
  N2             1              45
D308V8, multiclass
     clus
vv    RXFP2 MUTATED RXFP2 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
D308V9, multiclass
     clus
vv    RXFP2 MUTATED RXFP2 WILD-TYPE
  I               2              46
  II              4              78
  III             2              58
  IV              1              28

Clustering(309) Variable = TMEFF1 MUTATION ANALYSIS
D309V1, survival
                  sevent
clus2                0   1
  TMEFF1 MUTATED     6   1
  TMEFF1 WILD-TYPE 100  13
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               7              113 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               1               13 
$`TMEFF1 MUTATED`
TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3727 TCGA-AG-3892 
        0.99        18.02         4.01        20.98         0.95         1.02 
TCGA-AG-A002 
       20.94 

$`TMEFF1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
            0.95             0.92 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
           20.98            72.07 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
            4.01            10.98 
[1] "0.9 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
[1] "hr=" "1.6"
D309V2, continuous
D309V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEFF1 MUTATED      4    3
  TMEFF1 WILD-TYPE  150   65
        clus
vv       TMEFF1 MUTATED TMEFF1 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D309V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEFF1 MUTATED      4    3
  TMEFF1 WILD-TYPE  103  114
        clus
vv       TMEFF1 MUTATED TMEFF1 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
D309V5, multiclass
                                clus
vv                               TMEFF1 MUTATED TMEFF1 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D309V6, multiclass
    clus
vv   TMEFF1 MUTATED TMEFF1 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              2              148
  T4              3               14
D309V7, multiclass
    clus
vv   TMEFF1 MUTATED TMEFF1 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              0               46
D309V8, multiclass
     clus
vv    TMEFF1 MUTATED TMEFF1 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D309V9, multiclass
     clus
vv    TMEFF1 MUTATED TMEFF1 WILD-TYPE
  I                2               46
  II               4               78
  III              1               59
  IV               0               29

Clustering(310) Variable = OR51I2 MUTATION ANALYSIS
D310V1, survival
                  sevent
clus2                0   1
  OR51I2 MUTATED     2   1
  OR51I2 WILD-TYPE 104  13
  OR51I2 MUTATED OR51I2 WILD-TYPE 
               3              117 
  OR51I2 MUTATED OR51I2 WILD-TYPE 
               1               13 
$`OR51I2 MUTATED`
TCGA-AA-A00N TCGA-AG-A002 TCGA-AG-A014 
        4.01        20.94        15.91 

$`OR51I2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  OR51I2 MUTATED OR51I2 WILD-TYPE 
            4.01             0.92 
  OR51I2 MUTATED OR51I2 WILD-TYPE 
           20.94            72.07 
  OR51I2 MUTATED OR51I2 WILD-TYPE 
           15.91            10.92 
[1] "4.0 - 20.9 (15.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51I2 MUTATED" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE"   "OR51I2 MUTATED" "OR51I2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" "OR51I2 WILD-TYPE" 
[1] "hr=" "3"  
D310V2, continuous
D310V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I2 MUTATED      4    2
  OR51I2 WILD-TYPE  150   66
        clus
vv       OR51I2 MUTATED OR51I2 WILD-TYPE
  COLON               4              150
  RECTUM              2               66
D310V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I2 MUTATED      2    4
  OR51I2 WILD-TYPE  105  113
        clus
vv       OR51I2 MUTATED OR51I2 WILD-TYPE
  FEMALE              2              105
  MALE                4              113
D310V5, multiclass
                                clus
vv                               OR51I2 MUTATED OR51I2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D310V6, multiclass
    clus
vv   OR51I2 MUTATED OR51I2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              1               16
D310V7, multiclass
    clus
vv   OR51I2 MUTATED OR51I2 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              2               44
D310V8, multiclass
     clus
vv    OR51I2 MUTATED OR51I2 WILD-TYPE
  M0               4              185
  M1               2               29
  M1A              0                1
D310V9, multiclass
     clus
vv    OR51I2 MUTATED OR51I2 WILD-TYPE
  I                2               46
  II               1               81
  III              1               59
  IV               2               27

Clustering(311) Variable = ZNF804B MUTATION ANALYSIS
D311V1, survival
                   sevent
clus2                 0   1
  ZNF804B MUTATED     4   1
  ZNF804B WILD-TYPE 102  13
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                5               115 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
                1                13 
$`ZNF804B MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 TCGA-AY-4071 TCGA-AG-A002 
        0.99         1.02        20.98         0.95        20.94 

$`ZNF804B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       18.02        40.93        16.31        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZNF804B MUTATED ZNF804B WILD-TYPE 
             0.95              0.92 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
            20.98             72.07 
  ZNF804B MUTATED ZNF804B WILD-TYPE 
             1.02             10.98 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE"   "ZNF804B MUTATED" "ZNF804B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF804B MUTATED" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" "ZNF804B WILD-TYPE" 
[1] "hr=" "2.7"
D311V2, continuous
D311V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      8    2
  ZNF804B WILD-TYPE  146   66
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D311V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804B MUTATED      5    6
  ZNF804B WILD-TYPE  102  111
        clus
vv       ZNF804B MUTATED ZNF804B WILD-TYPE
  FEMALE               5               102
  MALE                 6               111
D311V5, multiclass
                                clus
vv                               ZNF804B MUTATED ZNF804B WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D311V6, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  T1               1                 8
  T2               3                44
  T3               6               144
  T4               1                16
D311V7, multiclass
    clus
vv   ZNF804B MUTATED ZNF804B WILD-TYPE
  N0               9               125
  N1               0                44
  N2               2                44
D311V8, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D311V9, multiclass
     clus
vv    ZNF804B MUTATED ZNF804B WILD-TYPE
  I                 4                44
  II                5                77
  III               2                58
  IV                0                29

Clustering(312) Variable = LRGUK MUTATION ANALYSIS
D312V1, survival
                 sevent
clus2              0  1
  LRGUK MUTATED    8  1
  LRGUK WILD-TYPE 98 13
  LRGUK MUTATED LRGUK WILD-TYPE 
              9             111 
  LRGUK MUTATED LRGUK WILD-TYPE 
              1              13 
$`LRGUK MUTATED`
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R 
        0.99         1.02         4.01        20.98        12.00        35.01 
TCGA-AG-3581 TCGA-AG-3893 TCGA-AG-A002 
        1.02         0.99        20.94 

$`LRGUK WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       21.99        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  LRGUK MUTATED LRGUK WILD-TYPE 
           0.99            0.92 
  LRGUK MUTATED LRGUK WILD-TYPE 
          35.01           72.07 
  LRGUK MUTATED LRGUK WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRGUK MUTATED"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRGUK MUTATED"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRGUK MUTATED"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE"   "LRGUK MUTATED" "LRGUK WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRGUK MUTATED" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" "LRGUK WILD-TYPE" 
[1] "hr=" "1.3"
D312V2, continuous
D312V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRGUK MUTATED      7    3
  LRGUK WILD-TYPE  147   65
        clus
vv       LRGUK MUTATED LRGUK WILD-TYPE
  COLON              7             147
  RECTUM             3              65
D312V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRGUK MUTATED      2    8
  LRGUK WILD-TYPE  105  109
        clus
vv       LRGUK MUTATED LRGUK WILD-TYPE
  FEMALE             2             105
  MALE               8             109
D312V5, multiclass
                                clus
vv                               LRGUK MUTATED LRGUK WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D312V6, multiclass
    clus
vv   LRGUK MUTATED LRGUK WILD-TYPE
  T1             0               9
  T2             4              43
  T3             4             146
  T4             2              15
D312V7, multiclass
    clus
vv   LRGUK MUTATED LRGUK WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
D312V8, multiclass
     clus
vv    LRGUK MUTATED LRGUK WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D312V9, multiclass
     clus
vv    LRGUK MUTATED LRGUK WILD-TYPE
  I               4              44
  II              3              79
  III             3              57
  IV              0              29

Clustering(313) Variable = CLECL1 MUTATION ANALYSIS
D313V1, survival
                  sevent
clus2                0   1
  CLECL1 MUTATED     1   1
  CLECL1 WILD-TYPE 105  13
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               2              118 
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               1               13 
$`CLECL1 MUTATED`
TCGA-AA-3715 TCGA-AA-A00N 
        0.99         4.01 

$`CLECL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  CLECL1 MUTATED CLECL1 WILD-TYPE 
            0.99             0.92 
  CLECL1 MUTATED CLECL1 WILD-TYPE 
            4.01            72.07 
  CLECL1 MUTATED CLECL1 WILD-TYPE 
            2.50            11.49 
[1] "1.0 - 4.0 (2.5)"   "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLECL1 WILD-TYPE"   "CLECL1 MUTATED" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CLECL1 MUTATED"        
clus
  CLECL1 MUTATED CLECL1 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3811       TCGA-AA-3818 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877       TCGA-AA-3939 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"CLECL1 WILD-TYPE" "CLECL1 WILD-TYPE" 
D313V2, continuous
D313V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLECL1 MUTATED      3    1
  CLECL1 WILD-TYPE  151   67
        clus
vv       CLECL1 MUTATED CLECL1 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D313V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLECL1 MUTATED      2    2
  CLECL1 WILD-TYPE  105  115
        clus
vv       CLECL1 MUTATED CLECL1 WILD-TYPE
  FEMALE              2              105
  MALE                2              115
D313V5, multiclass
                                clus
vv                               CLECL1 MUTATED CLECL1 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D313V6, multiclass
    clus
vv   CLECL1 MUTATED CLECL1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              2              148
  T4              1               16
D313V7, multiclass
    clus
vv   CLECL1 MUTATED CLECL1 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              0               46
D313V8, multiclass
     clus
vv    CLECL1 MUTATED CLECL1 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D313V9, multiclass
     clus
vv    CLECL1 MUTATED CLECL1 WILD-TYPE
  I                1               47
  II               2               80
  III              1               59
  IV               0               29

Clustering(314) Variable = DNAJC24 MUTATION ANALYSIS
D314V1, survival
                   sevent
clus2                 0   1
  DNAJC24 MUTATED     3   0
  DNAJC24 WILD-TYPE 103  14
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                3               117 
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                0                14 
$`DNAJC24 MUTATED`
TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-3977 
        0.99         0.99         1.02 

$`DNAJC24 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
             0.99              0.92 
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
             1.02             72.07 
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
             0.99             12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE"   "DNAJC24 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
[1] "hr="     "3400000"
D314V2, continuous
D314V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DNAJC24 MUTATED      3    0
  DNAJC24 WILD-TYPE  151   68
        clus
vv       DNAJC24 MUTATED DNAJC24 WILD-TYPE
  COLON                3               151
  RECTUM               0                68
D314V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DNAJC24 MUTATED      2    1
  DNAJC24 WILD-TYPE  105  116
        clus
vv       DNAJC24 MUTATED DNAJC24 WILD-TYPE
  FEMALE               2               105
  MALE                 1               116
D314V5, multiclass
                                clus
vv                               DNAJC24 MUTATED DNAJC24 WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D314V6, multiclass
    clus
vv   DNAJC24 MUTATED DNAJC24 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               1               149
  T4               0                17
D314V7, multiclass
    clus
vv   DNAJC24 MUTATED DNAJC24 WILD-TYPE
  N0               2               132
  N1               0                44
  N2               1                45
D314V8, multiclass
[1] "Remove cluster labels:" "DNAJC24 MUTATED"       
clus
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                2               219 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3560        TCGA-AA-3561 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3930 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3976        TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3984        TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A022        TCGA-AA-A024 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AF-2689        TCGA-AF-2691 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3574 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3575        TCGA-AG-3578        TCGA-AG-3580        TCGA-AG-3581 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3584        TCGA-AG-3586 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3587        TCGA-AG-3593        TCGA-AG-3594        TCGA-AG-3598 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3600        TCGA-AG-3601        TCGA-AG-3602 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3605        TCGA-AG-3608        TCGA-AG-3609        TCGA-AG-3611 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3612        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3881        TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3887 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
D314V9, multiclass
[1] "Remove cluster labels:" "DNAJC24 MUTATED"       
clus
  DNAJC24 MUTATED DNAJC24 WILD-TYPE 
                2               217 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516        TCGA-AA-3517 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520        TCGA-AA-3521 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525        TCGA-AA-3526 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3555 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3556        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667        TCGA-AA-3672 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679        TCGA-AA-3680 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685        TCGA-AA-3688 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695        TCGA-AA-3696 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3812        TCGA-AA-3814 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821        TCGA-AA-3831 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3850 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3855 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860        TCGA-AA-3864 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869        TCGA-AA-3870 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3930        TCGA-AA-3939 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3952 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3955        TCGA-AA-3956        TCGA-AA-3966        TCGA-AA-3971 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3976 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3979        TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A01Z        TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2691        TCGA-AF-2692 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AF-3400        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3892 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-3901        TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-4001        TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-4015        TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032 
"DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" "DNAJC24 WILD-TYPE" 
       TCGA-AG-A036 
"DNAJC24 WILD-TYPE" 

Clustering(315) Variable = HCN1 MUTATION ANALYSIS
D315V1, survival
                sevent
clus2              0   1
  HCN1 MUTATED     5   0
  HCN1 WILD-TYPE 101  14
  HCN1 MUTATED HCN1 WILD-TYPE 
             5            115 
  HCN1 MUTATED HCN1 WILD-TYPE 
             0             14 
$`HCN1 MUTATED`
TCGA-A6-2676 TCGA-AA-A00J TCGA-AA-A00Z TCGA-AG-A002 TCGA-AG-A02N 
       14.70        18.02        21.99        20.94        61.94 

$`HCN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  HCN1 MUTATED HCN1 WILD-TYPE 
         14.70           0.92 
  HCN1 MUTATED HCN1 WILD-TYPE 
         61.94          72.07 
  HCN1 MUTATED HCN1 WILD-TYPE 
         20.94          10.39 
[1] "14.7 - 61.9 (20.9)" "0.9 - 72.1 (10.4)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D315V2, continuous
D315V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      8    2
  HCN1 WILD-TYPE  146   66
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  COLON             8            146
  RECTUM            2             66
D315V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      5    5
  HCN1 WILD-TYPE  102  112
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
D315V5, multiclass
                                clus
vv                               HCN1 MUTATED HCN1 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D315V6, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            5            145
  T4            2             15
D315V7, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  N0            8            126
  N1            1             43
  N2            1             45
D315V8, multiclass
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
D315V9, multiclass
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  I              2             46
  II             6             76
  III            1             59
  IV             1             28

Clustering(316) Variable = SLCO4C1 MUTATION ANALYSIS
D316V1, survival
                   sevent
clus2                0  1
  SLCO4C1 MUTATED    8  1
  SLCO4C1 WILD-TYPE 98 13
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
                9               111 
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
                1                13 
$`SLCO4C1 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
       14.70         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A010 TCGA-AA-A01F TCGA-AG-A002 
       20.98        13.02        20.94 

$`SLCO4C1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
             0.99              0.92 
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
            20.98             72.07 
  SLCO4C1 MUTATED SLCO4C1 WILD-TYPE 
            13.02             10.92 
[1] "1.0 - 21.0 (13.0)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE"   "SLCO4C1 MUTATED" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO4C1 MUTATED" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" "SLCO4C1 WILD-TYPE" 
[1] "hr=" "1.1"
D316V2, continuous
D316V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO4C1 MUTATED      9    2
  SLCO4C1 WILD-TYPE  145   66
        clus
vv       SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D316V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO4C1 MUTATED      3    8
  SLCO4C1 WILD-TYPE  104  109
        clus
vv       SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  FEMALE               3               104
  MALE                 8               109
D316V5, multiclass
                                clus
vv                               SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D316V6, multiclass
    clus
vv   SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               4                13
D316V7, multiclass
    clus
vv   SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  N0               7               127
  N1               4                40
  N2               0                46
D316V8, multiclass
     clus
vv    SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D316V9, multiclass
     clus
vv    SLCO4C1 MUTATED SLCO4C1 WILD-TYPE
  I                 1                47
  II                5                77
  III               4                56
  IV                0                29

Clustering(317) Variable = ZEB1 MUTATION ANALYSIS
D317V1, survival
                sevent
clus2             0  1
  ZEB1 MUTATED    8  0
  ZEB1 WILD-TYPE 98 14
  ZEB1 MUTATED ZEB1 WILD-TYPE 
             8            112 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
             0             14 
$`ZEB1 MUTATED`
TCGA-A6-2672 TCGA-AA-3518 TCGA-AA-3977 TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A01R 
       16.54         1.02         1.02        34.03        18.02        35.01 
TCGA-AA-A02O TCGA-AG-A02N 
        0.92        61.94 

$`ZEB1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        30.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        40.96        38.01        72.07 

  ZEB1 MUTATED ZEB1 WILD-TYPE 
          0.92           0.92 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
         61.94          72.07 
  ZEB1 MUTATED ZEB1 WILD-TYPE 
         17.28          10.77 
[1] "0.9 - 61.9 (17.3)" "0.9 - 72.1 (10.8)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE"   "ZEB1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB1 WILD-TYPE"   "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ZEB1 MUTATED" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" "ZEB1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D317V2, continuous
D317V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB1 MUTATED      9    2
  ZEB1 WILD-TYPE  145   66
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  COLON             9            145
  RECTUM            2             66
D317V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB1 MUTATED      4    7
  ZEB1 WILD-TYPE  103  110
        clus
vv       ZEB1 MUTATED ZEB1 WILD-TYPE
  FEMALE            4            103
  MALE              7            110
D317V5, multiclass
                                clus
vv                               ZEB1 MUTATED ZEB1 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D317V6, multiclass
    clus
vv   ZEB1 MUTATED ZEB1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            9            141
  T4            1             16
D317V7, multiclass
    clus
vv   ZEB1 MUTATED ZEB1 WILD-TYPE
  N0            5            129
  N1            3             41
  N2            3             43
D317V8, multiclass
     clus
vv    ZEB1 MUTATED ZEB1 WILD-TYPE
  M0            10            179
  M1             0             31
  M1A            0              1
D317V9, multiclass
     clus
vv    ZEB1 MUTATED ZEB1 WILD-TYPE
  I              0             48
  II             4             78
  III            6             54
  IV             0             29

Clustering(318) Variable = LRTM1 MUTATION ANALYSIS
D318V1, survival
                 sevent
clus2               0   1
  LRTM1 MUTATED     5   1
  LRTM1 WILD-TYPE 101  13
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              6             114 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              1              13 
$`LRTM1 MUTATED`
TCGA-AA-3811 TCGA-AA-A00A TCGA-AA-A00L TCGA-AA-A00N TCGA-AG-3892 TCGA-AG-A002 
        0.99        18.02        17.00         4.01         1.02        20.94 

$`LRTM1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  LRTM1 MUTATED LRTM1 WILD-TYPE 
           0.99            0.92 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
          20.94           72.07 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
         10.505          10.950 
[1] "1.0 - 20.9 (10.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
[1] "hr=" "1.7"
D318V2, continuous
D318V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      5    2
  LRTM1 WILD-TYPE  149   66
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D318V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      2    5
  LRTM1 WILD-TYPE  105  112
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  FEMALE             2             105
  MALE               5             112
D318V5, multiclass
                                clus
vv                               LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D318V6, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             3             147
  T4             1              16
D318V7, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D318V8, multiclass
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D318V9, multiclass
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  I               2              46
  II              3              79
  III             2              58
  IV              0              29

Clustering(319) Variable = OLFML1 MUTATION ANALYSIS
D319V1, survival
                  sevent
clus2                0   1
  OLFML1 MUTATED     4   0
  OLFML1 WILD-TYPE 102  14
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               4              116 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               0               14 
$`OLFML1 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-A010 
        1.02         0.99         1.02        20.98 

$`OLFML1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OLFML1 MUTATED OLFML1 WILD-TYPE 
            0.99             0.92 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
           20.98            72.07 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
[1] "hr="     "9300000"
D319V2, continuous
D319V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      7    0
  OLFML1 WILD-TYPE  147   68
        clus
vv       OLFML1 MUTATED OLFML1 WILD-TYPE
  COLON               7              147
  RECTUM              0               68
D319V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      5    2
  OLFML1 WILD-TYPE  102  115
        clus
vv       OLFML1 MUTATED OLFML1 WILD-TYPE
  FEMALE              5              102
  MALE                2              115
D319V5, multiclass
                                clus
vv                               OLFML1 MUTATED OLFML1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D319V6, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              5              145
  T4              1               16
D319V7, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D319V8, multiclass
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D319V9, multiclass
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  I                1               47
  II               6               76
  III              0               60
  IV               0               29

Clustering(320) Variable = SLCO1B3 MUTATION ANALYSIS
D320V1, survival
                   sevent
clus2                 0   1
  SLCO1B3 MUTATED     6   1
  SLCO1B3 WILD-TYPE 100  13
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                7               113 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                1                13 
$`SLCO1B3 MUTATED`
TCGA-AA-3844 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01S 
        0.92         1.02         0.99         4.01        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`SLCO1B3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02        35.01        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
             0.92              0.92 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
            20.98             72.07 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
             1.02             12.00 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
[1] "hr=" "2.1"
D320V2, continuous
D320V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      7    1
  SLCO1B3 WILD-TYPE  147   67
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  COLON                7               147
  RECTUM               1                67
D320V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      5    3
  SLCO1B3 WILD-TYPE  102  114
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  FEMALE               5               102
  MALE                 3               114
D320V5, multiclass
                                clus
vv                               SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D320V6, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               2                15
D320V7, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  N0               6               128
  N1               1                43
  N2               1                45
D320V8, multiclass
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D320V9, multiclass
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  I                 2                46
  II                4                78
  III               2                58
  IV                0                29

Clustering(321) Variable = TAS2R10 MUTATION ANALYSIS
D321V1, survival
                   sevent
clus2                 0   1
  TAS2R10 MUTATED     4   0
  TAS2R10 WILD-TYPE 102  14
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                4               116 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                0                14 
$`TAS2R10 MUTATED`
TCGA-AA-3977 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A015 
        1.02         1.02        20.94        13.02 

$`TAS2R10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        15.91         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
             1.02              0.92 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
            20.94             72.07 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
             7.02             10.95 
[1] "1.0 - 20.9 (7.0)"  "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "TAS2R10 MUTATED" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE"   "TAS2R10 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D321V2, continuous
D321V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TAS2R10 MUTATED      3    3
  TAS2R10 WILD-TYPE  151   65
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  COLON                3               151
  RECTUM               3                65
D321V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TAS2R10 MUTATED      4    2
  TAS2R10 WILD-TYPE  103  115
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  FEMALE               4               103
  MALE                 2               115
D321V5, multiclass
                                clus
vv                               TAS2R10 MUTATED TAS2R10 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D321V6, multiclass
    clus
vv   TAS2R10 MUTATED TAS2R10 WILD-TYPE
  T1               2                 7
  T2               2                45
  T3               2               148
  T4               0                17
D321V7, multiclass
    clus
vv   TAS2R10 MUTATED TAS2R10 WILD-TYPE
  N0               6               128
  N1               0                44
  N2               0                46
D321V8, multiclass
     clus
vv    TAS2R10 MUTATED TAS2R10 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
D321V9, multiclass
     clus
vv    TAS2R10 MUTATED TAS2R10 WILD-TYPE
  I                 3                45
  II                2                80
  III               0                60
  IV                0                29

Clustering(322) Variable = TM9SF1 MUTATION ANALYSIS
D322V1, survival
                  sevent
clus2                0   1
  TM9SF1 MUTATED     5   0
  TM9SF1 WILD-TYPE 101  14
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
               5              115 
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
               0               14 
$`TM9SF1 MUTATED`
TCGA-AA-A00A TCGA-AA-A010 TCGA-AA-A01R TCGA-AF-3400 TCGA-AG-3892 
       18.02        20.98        35.01        12.72         1.02 

$`TM9SF1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       13.55        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
            1.02             0.92 
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
           35.01            72.07 
  TM9SF1 MUTATED TM9SF1 WILD-TYPE 
           18.02            10.62 
[1] "1.0 - 35.0 (18.0)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TM9SF1 WILD-TYPE"   "TM9SF1 MUTATED" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" "TM9SF1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D322V2, continuous
D322V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM9SF1 MUTATED      7    2
  TM9SF1 WILD-TYPE  147   66
        clus
vv       TM9SF1 MUTATED TM9SF1 WILD-TYPE
  COLON               7              147
  RECTUM              2               66
D322V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TM9SF1 MUTATED      3    6
  TM9SF1 WILD-TYPE  104  111
        clus
vv       TM9SF1 MUTATED TM9SF1 WILD-TYPE
  FEMALE              3              104
  MALE                6              111
D322V5, multiclass
                                clus
vv                               TM9SF1 MUTATED TM9SF1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D322V6, multiclass
    clus
vv   TM9SF1 MUTATED TM9SF1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              1               16
D322V7, multiclass
    clus
vv   TM9SF1 MUTATED TM9SF1 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              2               44
D322V8, multiclass
     clus
vv    TM9SF1 MUTATED TM9SF1 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D322V9, multiclass
     clus
vv    TM9SF1 MUTATED TM9SF1 WILD-TYPE
  I                3               45
  II               4               78
  III              1               59
  IV               1               28

Clustering(323) Variable = BOC MUTATION ANALYSIS
D323V1, survival
               sevent
clus2            0  1
  BOC MUTATED    8  1
  BOC WILD-TYPE 98 13
  BOC MUTATED BOC WILD-TYPE 
            9           111 
  BOC MUTATED BOC WILD-TYPE 
            1            13 
$`BOC MUTATED`
TCGA-A6-2676 TCGA-AA-3818 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00J 
       14.70         0.99         0.99         0.99        30.02        18.02 
TCGA-AA-A01X TCGA-AG-4008 TCGA-AG-A002 
       26.01         1.02        20.94 

$`BOC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  BOC MUTATED BOC WILD-TYPE 
         0.99          0.92 
  BOC MUTATED BOC WILD-TYPE 
        30.02         72.07 
  BOC MUTATED BOC WILD-TYPE 
        14.70         10.92 
[1] "1.0 - 30.0 (14.7)" "0.9 - 72.1 (10.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "BOC MUTATED" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "BOC MUTATED" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "BOC MUTATED" "BOC WILD-TYPE"   "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE"   "BOC MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "BOC MUTATED" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" "BOC WILD-TYPE" 
[1] "hr=" "1.2"
D323V2, continuous
D323V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  BOC MUTATED     11    3
  BOC WILD-TYPE  143   65
        clus
vv       BOC MUTATED BOC WILD-TYPE
  COLON           11           143
  RECTUM           3            65
D323V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  BOC MUTATED      8    6
  BOC WILD-TYPE   99  111
        clus
vv       BOC MUTATED BOC WILD-TYPE
  FEMALE           8            99
  MALE             6           111
D323V5, multiclass
                                clus
vv                               BOC MUTATED BOC WILD-TYPE
  COLON ADENOCARCINOMA                     7           121
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    3            54
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D323V6, multiclass
    clus
vv   BOC MUTATED BOC WILD-TYPE
  T1           0             9
  T2           2            45
  T3           9           141
  T4           2            15
D323V7, multiclass
    clus
vv   BOC MUTATED BOC WILD-TYPE
  N0          11           123
  N1           3            41
  N2           0            46
D323V8, multiclass
     clus
vv    BOC MUTATED BOC WILD-TYPE
  M0           14           175
  M1            0            31
  M1A           0             1
D323V9, multiclass
     clus
vv    BOC MUTATED BOC WILD-TYPE
  I             1            47
  II           10            72
  III           3            57
  IV            0            29

Clustering(324) Variable = CFHR5 MUTATION ANALYSIS
D324V1, survival
                 sevent
clus2               0   1
  CFHR5 MUTATED     2   1
  CFHR5 WILD-TYPE 104  13
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              3             117 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
              1              13 
$`CFHR5 MUTATED`
TCGA-AA-A004 TCGA-AA-A00N TCGA-AG-A01Y 
       13.94         4.01        63.98 

$`CFHR5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CFHR5 MUTATED CFHR5 WILD-TYPE 
           4.01            0.92 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
          63.98           72.07 
  CFHR5 MUTATED CFHR5 WILD-TYPE 
          13.94           10.92 
[1] "4.0 - 64.0 (13.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CFHR5 WILD-TYPE"   "CFHR5 MUTATED" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE"   "CFHR5 MUTATED" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" "CFHR5 WILD-TYPE" 
[1] "hr=" "1.8"
D324V2, continuous
D324V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      3    3
  CFHR5 WILD-TYPE  151   65
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON              3             151
  RECTUM             3              65
D324V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR5 MUTATED      3    3
  CFHR5 WILD-TYPE  104  114
        clus
vv       CFHR5 MUTATED CFHR5 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D324V5, multiclass
                                clus
vv                               CFHR5 MUTATED CFHR5 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D324V6, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             5             145
  T4             1              16
D324V7, multiclass
    clus
vv   CFHR5 MUTATED CFHR5 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D324V8, multiclass
     clus
vv    CFHR5 MUTATED CFHR5 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D324V9, multiclass
     clus
vv    CFHR5 MUTATED CFHR5 WILD-TYPE
  I               0              48
  II              6              76
  III             0              60
  IV              0              29

Clustering(325) Variable = PKHD1 MUTATION ANALYSIS
D325V1, survival
                 sevent
clus2              0  1
  PKHD1 MUTATED   15  1
  PKHD1 WILD-TYPE 91 13
  PKHD1 MUTATED PKHD1 WILD-TYPE 
             16             104 
  PKHD1 MUTATED PKHD1 WILD-TYPE 
              1              13 
$`PKHD1 MUTATED`
TCGA-A6-2677 TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 
       17.79         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A029 TCGA-AG-3893 
       18.02         4.01        20.98        35.01        51.95         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A016 
        1.02         1.02        20.94         1.02 

$`PKHD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        15.91        13.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PKHD1 MUTATED PKHD1 WILD-TYPE 
           0.99            0.92 
  PKHD1 MUTATED PKHD1 WILD-TYPE 
          51.95           72.07 
  PKHD1 MUTATED PKHD1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 52.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PKHD1 WILD-TYPE"   "PKHD1 MUTATED"   "PKHD1 MUTATED" "PKHD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "PKHD1 MUTATED" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" "PKHD1 WILD-TYPE" 
[1] "hr=" "1.6"
D325V2, continuous
D325V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PKHD1 MUTATED     21    5
  PKHD1 WILD-TYPE  133   63
        clus
vv       PKHD1 MUTATED PKHD1 WILD-TYPE
  COLON             21             133
  RECTUM             5              63
D325V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PKHD1 MUTATED     14   12
  PKHD1 WILD-TYPE   93  105
        clus
vv       PKHD1 MUTATED PKHD1 WILD-TYPE
  FEMALE            14              93
  MALE              12             105
D325V5, multiclass
                                clus
vv                               PKHD1 MUTATED PKHD1 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D325V6, multiclass
    clus
vv   PKHD1 MUTATED PKHD1 WILD-TYPE
  T1             0               9
  T2             3              44
  T3            18             132
  T4             5              12
D325V7, multiclass
    clus
vv   PKHD1 MUTATED PKHD1 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             8              38
D325V8, multiclass
     clus
vv    PKHD1 MUTATED PKHD1 WILD-TYPE
  M0             21             168
  M1              4              27
  M1A             0               1
D325V9, multiclass
     clus
vv    PKHD1 MUTATED PKHD1 WILD-TYPE
  I               2              46
  II             13              69
  III             6              54
  IV              4              25

Clustering(326) Variable = DOK5 MUTATION ANALYSIS
D326V1, survival
                sevent
clus2              0   1
  DOK5 MUTATED     4   0
  DOK5 WILD-TYPE 102  14
  DOK5 MUTATED DOK5 WILD-TYPE 
             4            116 
  DOK5 MUTATED DOK5 WILD-TYPE 
             0             14 
$`DOK5 MUTATED`
TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3966 TCGA-AG-3583 
        0.99         0.99         1.02         2.01 

$`DOK5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DOK5 MUTATED DOK5 WILD-TYPE 
          0.99           0.92 
  DOK5 MUTATED DOK5 WILD-TYPE 
          2.01          72.07 
  DOK5 MUTATED DOK5 WILD-TYPE 
         1.005         12.000 
[1] "1.0 - 2.0 (1.0)"   "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
[1] "hr="     "9300000"
D326V2, continuous
D326V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      4    2
  DOK5 WILD-TYPE  150   66
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  COLON             4            150
  RECTUM            2             66
D326V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      5    1
  DOK5 WILD-TYPE  102  116
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  FEMALE            5            102
  MALE              1            116
D326V5, multiclass
                                clus
vv                               DOK5 MUTATED DOK5 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
D326V6, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            0             17
D326V7, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  N0            4            130
  N1            0             44
  N2            2             44
D326V8, multiclass
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D326V9, multiclass
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  I              1             47
  II             3             79
  III            1             59
  IV             1             28

Clustering(327) Variable = TMEM74 MUTATION ANALYSIS
D327V1, survival
                  sevent
clus2                0   1
  TMEM74 MUTATED     4   1
  TMEM74 WILD-TYPE 102  13
  TMEM74 MUTATED TMEM74 WILD-TYPE 
               5              115 
  TMEM74 MUTATED TMEM74 WILD-TYPE 
               1               13 
$`TMEM74 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-AA-A00N TCGA-AA-A01Z TCGA-AG-A02N 
       14.70         9.14         4.01        20.98        61.94 

$`TMEM74 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        26.01        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  TMEM74 MUTATED TMEM74 WILD-TYPE 
            4.01             0.92 
  TMEM74 MUTATED TMEM74 WILD-TYPE 
           61.94            72.07 
  TMEM74 MUTATED TMEM74 WILD-TYPE 
           14.70            10.92 
[1] "4.0 - 61.9 (14.7)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE"   "TMEM74 MUTATED" "TMEM74 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "TMEM74 MUTATED" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" "TMEM74 WILD-TYPE" 
[1] "hr=" "1.2"
D327V2, continuous
D327V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEM74 MUTATED      5    1
  TMEM74 WILD-TYPE  149   67
        clus
vv       TMEM74 MUTATED TMEM74 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D327V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEM74 MUTATED      1    5
  TMEM74 WILD-TYPE  106  112
        clus
vv       TMEM74 MUTATED TMEM74 WILD-TYPE
  FEMALE              1              106
  MALE                5              112
D327V5, multiclass
                                clus
vv                               TMEM74 MUTATED TMEM74 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D327V6, multiclass
    clus
vv   TMEM74 MUTATED TMEM74 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              4              146
  T4              1               16
D327V7, multiclass
    clus
vv   TMEM74 MUTATED TMEM74 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D327V8, multiclass
     clus
vv    TMEM74 MUTATED TMEM74 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D327V9, multiclass
     clus
vv    TMEM74 MUTATED TMEM74 WILD-TYPE
  I                0               48
  II               5               77
  III              1               59
  IV               0               29

Clustering(328) Variable = VCAM1 MUTATION ANALYSIS
D328V1, survival
                 sevent
clus2               0   1
  VCAM1 MUTATED     3   2
  VCAM1 WILD-TYPE 103  12
  VCAM1 MUTATED VCAM1 WILD-TYPE 
              5             115 
  VCAM1 MUTATED VCAM1 WILD-TYPE 
              2              12 
$`VCAM1 MUTATED`
TCGA-AA-3844 TCGA-AA-A00N TCGA-AY-4071 TCGA-AG-3726 TCGA-AG-3892 
        0.92         4.01         0.95         1.02         1.02 

$`VCAM1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        40.93        16.31        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        1.02         0.99         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  VCAM1 MUTATED VCAM1 WILD-TYPE 
           0.92            0.92 
  VCAM1 MUTATED VCAM1 WILD-TYPE 
           4.01           72.07 
  VCAM1 MUTATED VCAM1 WILD-TYPE 
           1.02           12.00 
[1] "0.9 - 4.0 (1.0)"   "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"VCAM1 WILD-TYPE"   "VCAM1 MUTATED" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" "VCAM1 WILD-TYPE" 
[1] "hr=" "17" 
D328V2, continuous
D328V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VCAM1 MUTATED      5    2
  VCAM1 WILD-TYPE  149   66
        clus
vv       VCAM1 MUTATED VCAM1 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D328V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VCAM1 MUTATED      6    2
  VCAM1 WILD-TYPE  101  115
        clus
vv       VCAM1 MUTATED VCAM1 WILD-TYPE
  FEMALE             6             101
  MALE               2             115
D328V5, multiclass
                                clus
vv                               VCAM1 MUTATED VCAM1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D328V6, multiclass
    clus
vv   VCAM1 MUTATED VCAM1 WILD-TYPE
  T1             2               7
  T2             1              46
  T3             3             147
  T4             2              15
D328V7, multiclass
    clus
vv   VCAM1 MUTATED VCAM1 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             2              44
D328V8, multiclass
     clus
vv    VCAM1 MUTATED VCAM1 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
D328V9, multiclass
     clus
vv    VCAM1 MUTATED VCAM1 WILD-TYPE
  I               3              45
  II              3              79
  III             1              59
  IV              1              28

Clustering(329) Variable = NELL1 MUTATION ANALYSIS
D329V1, survival
                 sevent
clus2              0  1
  NELL1 MUTATED    8  0
  NELL1 WILD-TYPE 98 14
  NELL1 MUTATED NELL1 WILD-TYPE 
              8             112 
  NELL1 MUTATED NELL1 WILD-TYPE 
              0              14 
$`NELL1 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A01R 
        1.02         0.99         1.02        18.02        20.98        35.01 
TCGA-AG-3581 TCGA-AG-A002 
        1.02        20.94 

$`NELL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  NELL1 MUTATED NELL1 WILD-TYPE 
           0.99            0.92 
  NELL1 MUTATED NELL1 WILD-TYPE 
          35.01           72.07 
  NELL1 MUTATED NELL1 WILD-TYPE 
           9.52           10.95 
[1] "1.0 - 35.0 (9.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D329V2, continuous
D329V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED     10    2
  NELL1 WILD-TYPE  144   66
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D329V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      6    6
  NELL1 WILD-TYPE  101  111
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
D329V5, multiclass
                                clus
vv                               NELL1 MUTATED NELL1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D329V6, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             3              14
D329V7, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             1              45
D329V8, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D329V9, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  I               3              45
  II              6              76
  III             2              58
  IV              0              29

Clustering(330) Variable = GSK3B MUTATION ANALYSIS
D330V1, survival
                 sevent
clus2               0   1
  GSK3B MUTATED     4   0
  GSK3B WILD-TYPE 102  14
  GSK3B MUTATED GSK3B WILD-TYPE 
              4             116 
  GSK3B MUTATED GSK3B WILD-TYPE 
              0              14 
$`GSK3B MUTATED`
TCGA-A6-3808 TCGA-AA-3562 TCGA-AA-3715 TCGA-AA-A010 
        9.14         1.02         0.99        20.98 

$`GSK3B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  GSK3B MUTATED GSK3B WILD-TYPE 
           0.99            0.92 
  GSK3B MUTATED GSK3B WILD-TYPE 
          20.98           72.07 
  GSK3B MUTATED GSK3B WILD-TYPE 
           5.08           11.49 
[1] "1.0 - 21.0 (5.1)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE"   "GSK3B MUTATED" "GSK3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GSK3B MUTATED" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" "GSK3B WILD-TYPE" 
[1] "hr="     "2.5e+07"
D330V2, continuous
D330V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSK3B MUTATED      6    1
  GSK3B WILD-TYPE  148   67
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D330V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSK3B MUTATED      4    3
  GSK3B WILD-TYPE  103  114
        clus
vv       GSK3B MUTATED GSK3B WILD-TYPE
  FEMALE             4             103
  MALE               3             114
D330V5, multiclass
                                clus
vv                               GSK3B MUTATED GSK3B WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D330V6, multiclass
    clus
vv   GSK3B MUTATED GSK3B WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             1              16
D330V7, multiclass
    clus
vv   GSK3B MUTATED GSK3B WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
D330V8, multiclass
     clus
vv    GSK3B MUTATED GSK3B WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D330V9, multiclass
     clus
vv    GSK3B MUTATED GSK3B WILD-TYPE
  I               2              46
  II              4              78
  III             1              59
  IV              0              29

Clustering(331) Variable = ZNF585A MUTATION ANALYSIS
D331V1, survival
                   sevent
clus2                 0   1
  ZNF585A MUTATED     5   1
  ZNF585A WILD-TYPE 101  13
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                6               114 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                1                13 
$`ZNF585A MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02         4.01        20.98         1.02        20.94 

$`ZNF585A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF585A MUTATED ZNF585A WILD-TYPE 
             0.99              0.92 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
            20.98             72.07 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
[1] "hr=" "2.1"
D331V2, continuous
D331V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      7    3
  ZNF585A WILD-TYPE  147   65
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D331V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      5    5
  ZNF585A WILD-TYPE  102  112
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  FEMALE               5               102
  MALE                 5               112
D331V5, multiclass
                                clus
vv                               ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
D331V6, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
D331V7, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  N0               8               126
  N1               1                43
  N2               1                45
D331V8, multiclass
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D331V9, multiclass
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  I                 2                46
  II                5                77
  III               2                58
  IV                0                29

Clustering(332) Variable = C22ORF23 MUTATION ANALYSIS
D332V1, survival
                    sevent
clus2                  0   1
  C22ORF23 MUTATED     4   0
  C22ORF23 WILD-TYPE 102  14
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 4                116 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 0                 14 
$`C22ORF23 MUTATED`
TCGA-AA-3685 TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-A002 
        0.99         0.99        20.98        20.94 

$`C22ORF23 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
              0.99               0.92 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
             20.98              72.07 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
            10.965             10.950 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D332V2, continuous
D332V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF23 MUTATED      5    1
  C22ORF23 WILD-TYPE  149   67
        clus
vv       C22ORF23 MUTATED C22ORF23 WILD-TYPE
  COLON                 5                149
  RECTUM                1                 67
D332V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF23 MUTATED      3    3
  C22ORF23 WILD-TYPE  104  114
        clus
vv       C22ORF23 MUTATED C22ORF23 WILD-TYPE
  FEMALE                3                104
  MALE                  3                114
D332V5, multiclass
                                clus
vv                               C22ORF23 MUTATED C22ORF23 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D332V6, multiclass
    clus
vv   C22ORF23 MUTATED C22ORF23 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                2                148
  T4                2                 15
D332V7, multiclass
    clus
vv   C22ORF23 MUTATED C22ORF23 WILD-TYPE
  N0                5                129
  N1                1                 43
  N2                0                 46
D332V8, multiclass
     clus
vv    C22ORF23 MUTATED C22ORF23 WILD-TYPE
  M0                 6                183
  M1                 0                 31
  M1A                0                  1
D332V9, multiclass
     clus
vv    C22ORF23 MUTATED C22ORF23 WILD-TYPE
  I                  2                 46
  II                 3                 79
  III                1                 59
  IV                 0                 29

Clustering(333) Variable = CYP19A1 MUTATION ANALYSIS
D333V1, survival
                   sevent
clus2                 0   1
  CYP19A1 MUTATED     6   0
  CYP19A1 WILD-TYPE 100  14
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                6               114 
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
                0                14 
$`CYP19A1 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3877 TCGA-AG-A002 TCGA-AG-A00Y 
       16.54         0.99         1.02         0.99        20.94        23.01 

$`CYP19A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
             0.99              0.92 
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
            23.01             72.07 
  CYP19A1 MUTATED CYP19A1 WILD-TYPE 
             8.78             10.95 
[1] "1.0 - 23.0 (8.8)"  "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE"   "CYP19A1 MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "CYP19A1 MUTATED" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" "CYP19A1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D333V2, continuous
D333V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      5    3
  CYP19A1 WILD-TYPE  149   65
        clus
vv       CYP19A1 MUTATED CYP19A1 WILD-TYPE
  COLON                5               149
  RECTUM               3                65
D333V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP19A1 MUTATED      5    3
  CYP19A1 WILD-TYPE  102  114
        clus
vv       CYP19A1 MUTATED CYP19A1 WILD-TYPE
  FEMALE               5               102
  MALE                 3               114
D333V5, multiclass
                                clus
vv                               CYP19A1 MUTATED CYP19A1 WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D333V6, multiclass
    clus
vv   CYP19A1 MUTATED CYP19A1 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               5               145
  T4               1                16
D333V7, multiclass
    clus
vv   CYP19A1 MUTATED CYP19A1 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               1                45
D333V8, multiclass
     clus
vv    CYP19A1 MUTATED CYP19A1 WILD-TYPE
  M0                8               181
  M1                0                31
  M1A               0                 1
D333V9, multiclass
     clus
vv    CYP19A1 MUTATED CYP19A1 WILD-TYPE
  I                 2                46
  II                3                79
  III               3                57
  IV                0                29

Clustering(334) Variable = STAG1 MUTATION ANALYSIS
D334V1, survival
                 sevent
clus2               0   1
  STAG1 MUTATED     6   1
  STAG1 WILD-TYPE 100  13
  STAG1 MUTATED STAG1 WILD-TYPE 
              7             113 
  STAG1 MUTATED STAG1 WILD-TYPE 
              1              13 
$`STAG1 MUTATED`
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
       10.92         1.02         0.99         1.02         4.01        20.98 
TCGA-AG-A002 
       20.94 

$`STAG1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       15.52         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  STAG1 MUTATED STAG1 WILD-TYPE 
           0.99            0.92 
  STAG1 MUTATED STAG1 WILD-TYPE 
          20.98           72.07 
  STAG1 MUTATED STAG1 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE"   "STAG1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"STAG1 WILD-TYPE"   "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "STAG1 MUTATED" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" "STAG1 WILD-TYPE" 
[1] "hr=" "1.7"
D334V2, continuous
D334V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG1 MUTATED     10    2
  STAG1 WILD-TYPE  144   66
        clus
vv       STAG1 MUTATED STAG1 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D334V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG1 MUTATED      7    5
  STAG1 WILD-TYPE  100  112
        clus
vv       STAG1 MUTATED STAG1 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
D334V5, multiclass
                                clus
vv                               STAG1 MUTATED STAG1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D334V6, multiclass
    clus
vv   STAG1 MUTATED STAG1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             2              15
D334V7, multiclass
    clus
vv   STAG1 MUTATED STAG1 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             2              44
D334V8, multiclass
     clus
vv    STAG1 MUTATED STAG1 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D334V9, multiclass
     clus
vv    STAG1 MUTATED STAG1 WILD-TYPE
  I               2              46
  II              5              77
  III             4              56
  IV              0              29

Clustering(335) Variable = FAM47A MUTATION ANALYSIS
D335V1, survival
                  sevent
clus2                0   1
  FAM47A MUTATED     4   0
  FAM47A WILD-TYPE 102  14
  FAM47A MUTATED FAM47A WILD-TYPE 
               4              116 
  FAM47A MUTATED FAM47A WILD-TYPE 
               0               14 
$`FAM47A MUTATED`
TCGA-AA-3811 TCGA-AA-A00W TCGA-AA-A010 TCGA-AG-3892 
        0.99        14.99        20.98         1.02 

$`FAM47A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAM47A MUTATED FAM47A WILD-TYPE 
            0.99             0.92 
  FAM47A MUTATED FAM47A WILD-TYPE 
           20.98            72.07 
  FAM47A MUTATED FAM47A WILD-TYPE 
           8.005           10.950 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM47A WILD-TYPE"   "FAM47A MUTATED" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" "FAM47A WILD-TYPE" 
[1] "hr="     "2.5e+07"
D335V2, continuous
D335V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47A MUTATED      6    3
  FAM47A WILD-TYPE  148   65
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D335V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47A MUTATED      8    1
  FAM47A WILD-TYPE   99  116
        clus
vv       FAM47A MUTATED FAM47A WILD-TYPE
  FEMALE              8               99
  MALE                1              116
D335V5, multiclass
                                clus
vv                               FAM47A MUTATED FAM47A WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D335V6, multiclass
    clus
vv   FAM47A MUTATED FAM47A WILD-TYPE
  T1              2                7
  T2              3               44
  T3              3              147
  T4              1               16
D335V7, multiclass
    clus
vv   FAM47A MUTATED FAM47A WILD-TYPE
  N0              5              129
  N1              2               42
  N2              2               44
D335V8, multiclass
     clus
vv    FAM47A MUTATED FAM47A WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
D335V9, multiclass
     clus
vv    FAM47A MUTATED FAM47A WILD-TYPE
  I                4               44
  II               1               81
  III              3               57
  IV               1               28

Clustering(336) Variable = RIMBP2 MUTATION ANALYSIS
D336V1, survival
                  sevent
clus2               0  1
  RIMBP2 MUTATED    9  2
  RIMBP2 WILD-TYPE 97 12
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
              11              109 
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
               2               12 
$`RIMBP2 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P 
        0.99         0.99        18.02         4.01        20.98        38.07 
TCGA-AA-A01Z TCGA-AA-A03J TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A036 
       20.98        40.93         1.02        20.94        72.07 

$`RIMBP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        18.02        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 
       38.01 

  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
            0.99             0.92 
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
           72.07            70.03 
  RIMBP2 MUTATED RIMBP2 WILD-TYPE 
           20.94            10.62 
[1] "1.0 - 72.1 (20.9)" "0.9 - 70.0 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "RIMBP2 MUTATED" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE" "RIMBP2 WILD-TYPE"   "RIMBP2 MUTATED" 
[1] "hr=" "1.1"
D336V2, continuous
D336V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RIMBP2 MUTATED     12    4
  RIMBP2 WILD-TYPE  142   64
        clus
vv       RIMBP2 MUTATED RIMBP2 WILD-TYPE
  COLON              12              142
  RECTUM              4               64
D336V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RIMBP2 MUTATED     10    6
  RIMBP2 WILD-TYPE   97  111
        clus
vv       RIMBP2 MUTATED RIMBP2 WILD-TYPE
  FEMALE             10               97
  MALE                6              111
D336V5, multiclass
                                clus
vv                               RIMBP2 MUTATED RIMBP2 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D336V6, multiclass
    clus
vv   RIMBP2 MUTATED RIMBP2 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              8              142
  T4              4               13
D336V7, multiclass
    clus
vv   RIMBP2 MUTATED RIMBP2 WILD-TYPE
  N0             11              123
  N1              3               41
  N2              2               44
D336V8, multiclass
     clus
vv    RIMBP2 MUTATED RIMBP2 WILD-TYPE
  M0              16              173
  M1               0               31
  M1A              0                1
D336V9, multiclass
     clus
vv    RIMBP2 MUTATED RIMBP2 WILD-TYPE
  I                4               44
  II               7               75
  III              5               55
  IV               0               29

Clustering(337) Variable = KCNA1 MUTATION ANALYSIS
D337V1, survival
                 sevent
clus2               0   1
  KCNA1 MUTATED     5   0
  KCNA1 WILD-TYPE 101  14
  KCNA1 MUTATED KCNA1 WILD-TYPE 
              5             115 
  KCNA1 MUTATED KCNA1 WILD-TYPE 
              0              14 
$`KCNA1 MUTATED`
TCGA-A6-2683 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A02O 
       15.52         0.99        30.02        20.98         0.92 

$`KCNA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  KCNA1 MUTATED KCNA1 WILD-TYPE 
           0.92            0.92 
  KCNA1 MUTATED KCNA1 WILD-TYPE 
          30.02           72.07 
  KCNA1 MUTATED KCNA1 WILD-TYPE 
          15.52           10.92 
[1] "0.9 - 30.0 (15.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE"   "KCNA1 MUTATED" "KCNA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "KCNA1 MUTATED" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" "KCNA1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D337V2, continuous
D337V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA1 MUTATED      7    1
  KCNA1 WILD-TYPE  147   67
        clus
vv       KCNA1 MUTATED KCNA1 WILD-TYPE
  COLON              7             147
  RECTUM             1              67
D337V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA1 MUTATED      4    4
  KCNA1 WILD-TYPE  103  113
        clus
vv       KCNA1 MUTATED KCNA1 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
D337V5, multiclass
                                clus
vv                               KCNA1 MUTATED KCNA1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D337V6, multiclass
    clus
vv   KCNA1 MUTATED KCNA1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             3              14
D337V7, multiclass
    clus
vv   KCNA1 MUTATED KCNA1 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             1              45
D337V8, multiclass
     clus
vv    KCNA1 MUTATED KCNA1 WILD-TYPE
  M0              5             184
  M1              2              29
  M1A             0               1
D337V9, multiclass
     clus
vv    KCNA1 MUTATED KCNA1 WILD-TYPE
  I               0              48
  II              4              78
  III             1              59
  IV              2              27

Clustering(338) Variable = QRFPR MUTATION ANALYSIS
D338V1, survival
                 sevent
clus2               0   1
  QRFPR MUTATED     4   0
  QRFPR WILD-TYPE 102  14
  QRFPR MUTATED QRFPR WILD-TYPE 
              4             116 
  QRFPR MUTATED QRFPR WILD-TYPE 
              0              14 
$`QRFPR MUTATED`
TCGA-AA-A010 TCGA-AA-A01Z TCGA-AG-A002 TCGA-AG-A02X 
       20.98        20.98        20.94        40.96 

$`QRFPR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  QRFPR MUTATED QRFPR WILD-TYPE 
          20.94            0.92 
  QRFPR MUTATED QRFPR WILD-TYPE 
          40.96           72.07 
  QRFPR MUTATED QRFPR WILD-TYPE 
         20.980          10.505 
[1] "20.9 - 41.0 (21.0)" "0.9 - 72.1 (10.5)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"QRFPR WILD-TYPE"   "QRFPR MUTATED" "QRFPR WILD-TYPE" "QRFPR WILD-TYPE" 
[1] "hr="     "7.4e+07"
D338V2, continuous
D338V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  QRFPR MUTATED      4    3
  QRFPR WILD-TYPE  150   65
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  COLON              4             150
  RECTUM             3              65
D338V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  QRFPR MUTATED      3    4
  QRFPR WILD-TYPE  104  113
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  FEMALE             3             104
  MALE               4             113
D338V5, multiclass
                                clus
vv                               QRFPR MUTATED QRFPR WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D338V6, multiclass
    clus
vv   QRFPR MUTATED QRFPR WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             1              16
D338V7, multiclass
    clus
vv   QRFPR MUTATED QRFPR WILD-TYPE
  N0             7             127
  N1             0              44
  N2             0              46
D338V8, multiclass
     clus
vv    QRFPR MUTATED QRFPR WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
D338V9, multiclass
     clus
vv    QRFPR MUTATED QRFPR WILD-TYPE
  I               3              45
  II              4              78
  III             0              60
  IV              0              29

Clustering(339) Variable = CXORF59 MUTATION ANALYSIS
D339V1, survival
                   sevent
clus2                 0   1
  CXORF59 MUTATED     4   0
  CXORF59 WILD-TYPE 102  14
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                4               116 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                0                14 
$`CXORF59 MUTATED`
TCGA-AA-3518 TCGA-AA-3977 TCGA-AA-A01K TCGA-AA-A01S 
        1.02         1.02        13.02         1.02 

$`CXORF59 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T 
       12.00        12.00        38.07         1.02        35.01        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CXORF59 MUTATED CXORF59 WILD-TYPE 
             1.02              0.92 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
            13.02             72.07 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
             1.02             11.49 
[1] "1.0 - 13.0 (1.0)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
[1] "hr="     "9300000"
D339V2, continuous
D339V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      4    2
  CXORF59 WILD-TYPE  150   66
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  COLON                4               150
  RECTUM               2                66
D339V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      4    2
  CXORF59 WILD-TYPE  103  115
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  FEMALE               4               103
  MALE                 2               115
D339V5, multiclass
                                clus
vv                               CXORF59 MUTATED CXORF59 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D339V6, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               3               147
  T4               0                17
D339V7, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  N0               4               130
  N1               1                43
  N2               1                45
D339V8, multiclass
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
D339V9, multiclass
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  I                 2                46
  II                1                81
  III               2                58
  IV                0                29

Clustering(340) Variable = ERBB3 MUTATION ANALYSIS
D340V1, survival
                 sevent
clus2               0   1
  ERBB3 MUTATED     6   0
  ERBB3 WILD-TYPE 100  14
  ERBB3 MUTATED ERBB3 WILD-TYPE 
              6             114 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
              0              14 
$`ERBB3 MUTATED`
TCGA-AA-3715 TCGA-AA-A00A TCGA-AA-A00R TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-A02N 
        0.99        18.02         0.99        20.98         1.02        61.94 

$`ERBB3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  ERBB3 MUTATED ERBB3 WILD-TYPE 
           0.99            0.92 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
          61.94           72.07 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
           9.52           10.95 
[1] "1.0 - 61.9 (9.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D340V2, continuous
D340V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED     11    3
  ERBB3 WILD-TYPE  143   65
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON             11             143
  RECTUM             3              65
D340V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED      7    7
  ERBB3 WILD-TYPE  100  110
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  FEMALE             7             100
  MALE               7             110
D340V5, multiclass
                                clus
vv                               ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D340V6, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             9             141
  T4             2              15
D340V7, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             2              44
D340V8, multiclass
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
D340V9, multiclass
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  I               2              46
  II              7              75
  III             4              56
  IV              1              28

Clustering(341) Variable = FAT2 MUTATION ANALYSIS
D341V1, survival
                sevent
clus2             0  1
  FAT2 MUTATED   17  1
  FAT2 WILD-TYPE 89 13
  FAT2 MUTATED FAT2 WILD-TYPE 
            18            102 
  FAT2 MUTATED FAT2 WILD-TYPE 
             1             13 
$`FAT2 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3848 
       14.70         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 
        0.99         1.02         1.02        30.02         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A029 TCGA-AF-2691 TCGA-AG-3587 TCGA-AG-A002 TCGA-AG-A00Y 
       35.01        51.95        10.62         1.02        20.94        23.01 

$`FAT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         8.09         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  FAT2 MUTATED FAT2 WILD-TYPE 
          0.99           0.92 
  FAT2 MUTATED FAT2 WILD-TYPE 
         51.95          72.07 
  FAT2 MUTATED FAT2 WILD-TYPE 
         2.515         12.000 
[1] "1.0 - 52.0 (2.5)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED"   "FAT2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT2 WILD-TYPE"   "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE"   "FAT2 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "FAT2 MUTATED" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" "FAT2 WILD-TYPE" 
[1] "hr=" "1.9"
D341V2, continuous
D341V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     22    7
  FAT2 WILD-TYPE  132   61
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  COLON            22            132
  RECTUM            7             61
D341V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT2 MUTATED     17   12
  FAT2 WILD-TYPE   90  105
        clus
vv       FAT2 MUTATED FAT2 WILD-TYPE
  FEMALE           17             90
  MALE             12            105
D341V5, multiclass
                                clus
vv                               FAT2 MUTATED FAT2 WILD-TYPE
  COLON ADENOCARCINOMA                     14            114
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D341V6, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  T1            1              8
  T2            3             44
  T3           21            129
  T4            3             14
D341V7, multiclass
    clus
vv   FAT2 MUTATED FAT2 WILD-TYPE
  N0           19            115
  N1            4             40
  N2            6             40
D341V8, multiclass
     clus
vv    FAT2 MUTATED FAT2 WILD-TYPE
  M0            27            162
  M1             1             30
  M1A            0              1
D341V9, multiclass
     clus
vv    FAT2 MUTATED FAT2 WILD-TYPE
  I              3             45
  II            15             67
  III            9             51
  IV             1             28

Clustering(342) Variable = TAF1L MUTATION ANALYSIS
D342V1, survival
                 sevent
clus2              0  1
  TAF1L MUTATED    9  1
  TAF1L WILD-TYPE 97 13
  TAF1L MUTATED TAF1L WILD-TYPE 
             10             110 
  TAF1L MUTATED TAF1L WILD-TYPE 
              1              13 
$`TAF1L MUTATED`
TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N 
       16.54        10.92         1.02         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AF-2689 TCGA-AG-3892 TCGA-AG-A002 
       20.98        15.85         1.02        20.94 

$`TAF1L WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  TAF1L MUTATED TAF1L WILD-TYPE 
           0.99            0.92 
  TAF1L MUTATED TAF1L WILD-TYPE 
          20.98           72.07 
  TAF1L MUTATED TAF1L WILD-TYPE 
          7.465          11.490 
[1] "1.0 - 21.0 (7.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE"   "TAF1L MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TAF1L WILD-TYPE"   "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TAF1L MUTATED" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" "TAF1L WILD-TYPE" 
[1] "hr=" "1.1"
D342V2, continuous
D342V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1L MUTATED     13    3
  TAF1L WILD-TYPE  141   65
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D342V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAF1L MUTATED     11    5
  TAF1L WILD-TYPE   96  112
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  FEMALE            11              96
  MALE               5             112
D342V5, multiclass
                                clus
vv                               TAF1L MUTATED TAF1L WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D342V6, multiclass
    clus
vv   TAF1L MUTATED TAF1L WILD-TYPE
  T1             1               8
  T2             3              44
  T3            10             140
  T4             2              15
D342V7, multiclass
    clus
vv   TAF1L MUTATED TAF1L WILD-TYPE
  N0             9             125
  N1             4              40
  N2             3              43
D342V8, multiclass
     clus
vv    TAF1L MUTATED TAF1L WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
D342V9, multiclass
     clus
vv    TAF1L MUTATED TAF1L WILD-TYPE
  I               4              44
  II              5              77
  III             5              55
  IV              1              28

Clustering(343) Variable = ZNF474 MUTATION ANALYSIS
D343V1, survival
                  sevent
clus2                0   1
  ZNF474 MUTATED     3   0
  ZNF474 WILD-TYPE 103  14
  ZNF474 MUTATED ZNF474 WILD-TYPE 
               3              117 
  ZNF474 MUTATED ZNF474 WILD-TYPE 
               0               14 
$`ZNF474 MUTATED`
TCGA-AA-3555 TCGA-AA-A010 TCGA-AG-A002 
        0.99        20.98        20.94 

$`ZNF474 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZNF474 MUTATED ZNF474 WILD-TYPE 
            0.99             0.92 
  ZNF474 MUTATED ZNF474 WILD-TYPE 
           20.98            72.07 
  ZNF474 MUTATED ZNF474 WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 21.0 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF474 MUTATED" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" "ZNF474 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D343V2, continuous
D343V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF474 MUTATED      5    2
  ZNF474 WILD-TYPE  149   66
        clus
vv       ZNF474 MUTATED ZNF474 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D343V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF474 MUTATED      5    2
  ZNF474 WILD-TYPE  102  115
        clus
vv       ZNF474 MUTATED ZNF474 WILD-TYPE
  FEMALE              5              102
  MALE                2              115
D343V5, multiclass
                                clus
vv                               ZNF474 MUTATED ZNF474 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D343V6, multiclass
    clus
vv   ZNF474 MUTATED ZNF474 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
D343V7, multiclass
    clus
vv   ZNF474 MUTATED ZNF474 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              0               46
D343V8, multiclass
     clus
vv    ZNF474 MUTATED ZNF474 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D343V9, multiclass
     clus
vv    ZNF474 MUTATED ZNF474 WILD-TYPE
  I                2               46
  II               4               78
  III              1               59
  IV               0               29

Clustering(344) Variable = CDON MUTATION ANALYSIS
D344V1, survival
                sevent
clus2              0   1
  CDON MUTATED     4   1
  CDON WILD-TYPE 102  13
  CDON MUTATED CDON WILD-TYPE 
             5            115 
  CDON MUTATED CDON WILD-TYPE 
             1             13 
$`CDON MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AG-A036 
        1.02         4.01        20.98         1.02        72.07 

$`CDON WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 
       38.01 

  CDON MUTATED CDON WILD-TYPE 
          1.02           0.92 
  CDON MUTATED CDON WILD-TYPE 
         72.07          70.03 
  CDON MUTATED CDON WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 72.1 (4.0)"  "0.9 - 70.0 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE"   "CDON MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE"   "CDON MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE"   "CDON MUTATED" 
[1] "hr=" "1.4"
D344V2, continuous
D344V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDON MUTATED     13    1
  CDON WILD-TYPE  141   67
        clus
vv       CDON MUTATED CDON WILD-TYPE
  COLON            13            141
  RECTUM            1             67
D344V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDON MUTATED      9    5
  CDON WILD-TYPE   98  112
        clus
vv       CDON MUTATED CDON WILD-TYPE
  FEMALE            9             98
  MALE              5            112
D344V5, multiclass
                                clus
vv                               CDON MUTATED CDON WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D344V6, multiclass
    clus
vv   CDON MUTATED CDON WILD-TYPE
  T1            0              9
  T2            2             45
  T3            9            141
  T4            3             14
D344V7, multiclass
    clus
vv   CDON MUTATED CDON WILD-TYPE
  N0           11            123
  N1            2             42
  N2            1             45
D344V8, multiclass
     clus
vv    CDON MUTATED CDON WILD-TYPE
  M0            14            175
  M1             0             31
  M1A            0              1
D344V9, multiclass
     clus
vv    CDON MUTATED CDON WILD-TYPE
  I              1             47
  II            10             72
  III            3             57
  IV             0             29

Clustering(345) Variable = MSRB3 MUTATION ANALYSIS
D345V1, survival
                 sevent
clus2               0   1
  MSRB3 MUTATED     1   1
  MSRB3 WILD-TYPE 105  13
  MSRB3 MUTATED MSRB3 WILD-TYPE 
              2             118 
  MSRB3 MUTATED MSRB3 WILD-TYPE 
              1              13 
$`MSRB3 MUTATED`
TCGA-A6-2674 TCGA-AA-A00N 
       17.19         4.01 

$`MSRB3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  MSRB3 MUTATED MSRB3 WILD-TYPE 
           4.01            0.92 
  MSRB3 MUTATED MSRB3 WILD-TYPE 
          17.19           72.07 
  MSRB3 MUTATED MSRB3 WILD-TYPE 
          10.60           10.95 
[1] "4.0 - 17.2 (10.6)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MSRB3 WILD-TYPE"   "MSRB3 MUTATED" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
[1] "Remove cluster labels:" "MSRB3 MUTATED"         
clus
  MSRB3 MUTATED MSRB3 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"MSRB3 WILD-TYPE" "MSRB3 WILD-TYPE" 
D345V2, continuous
D345V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MSRB3 MUTATED      3    1
  MSRB3 WILD-TYPE  151   67
        clus
vv       MSRB3 MUTATED MSRB3 WILD-TYPE
  COLON              3             151
  RECTUM             1              67
D345V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MSRB3 MUTATED      1    3
  MSRB3 WILD-TYPE  106  114
        clus
vv       MSRB3 MUTATED MSRB3 WILD-TYPE
  FEMALE             1             106
  MALE               3             114
D345V5, multiclass
                                clus
vv                               MSRB3 MUTATED MSRB3 WILD-TYPE
  COLON ADENOCARCINOMA                       1             127
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D345V6, multiclass
    clus
vv   MSRB3 MUTATED MSRB3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             2             148
  T4             1              16
D345V7, multiclass
    clus
vv   MSRB3 MUTATED MSRB3 WILD-TYPE
  N0             3             131
  N1             0              44
  N2             1              45
D345V8, multiclass
     clus
vv    MSRB3 MUTATED MSRB3 WILD-TYPE
  M0              3             186
  M1              1              30
  M1A             0               1
D345V9, multiclass
     clus
vv    MSRB3 MUTATED MSRB3 WILD-TYPE
  I               1              47
  II              2              80
  III             0              60
  IV              0              29

Clustering(346) Variable = OR51G2 MUTATION ANALYSIS
D346V1, survival
                  sevent
clus2                0   1
  OR51G2 MUTATED     4   0
  OR51G2 WILD-TYPE 102  14
  OR51G2 MUTATED OR51G2 WILD-TYPE 
               4              116 
  OR51G2 MUTATED OR51G2 WILD-TYPE 
               0               14 
$`OR51G2 MUTATED`
TCGA-AA-3811 TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A036 
        0.99        20.94        61.94        72.07 

$`OR51G2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  OR51G2 MUTATED OR51G2 WILD-TYPE 
            0.99             0.92 
  OR51G2 MUTATED OR51G2 WILD-TYPE 
           72.07            70.03 
  OR51G2 MUTATED OR51G2 WILD-TYPE 
           41.44            10.77 
[1] "1.0 - 72.1 (41.4)" "0.9 - 70.0 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR51G2 MUTATED" "OR51G2 WILD-TYPE" "OR51G2 WILD-TYPE"   "OR51G2 MUTATED" 
[1] "hr="     "7.8e+07"
D346V2, continuous
D346V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51G2 MUTATED      3    3
  OR51G2 WILD-TYPE  151   65
        clus
vv       OR51G2 MUTATED OR51G2 WILD-TYPE
  COLON               3              151
  RECTUM              3               65
D346V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51G2 MUTATED      2    4
  OR51G2 WILD-TYPE  105  113
        clus
vv       OR51G2 MUTATED OR51G2 WILD-TYPE
  FEMALE              2              105
  MALE                4              113
D346V5, multiclass
                                clus
vv                               OR51G2 MUTATED OR51G2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D346V6, multiclass
    clus
vv   OR51G2 MUTATED OR51G2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              0               17
D346V7, multiclass
    clus
vv   OR51G2 MUTATED OR51G2 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              2               44
D346V8, multiclass
     clus
vv    OR51G2 MUTATED OR51G2 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D346V9, multiclass
     clus
vv    OR51G2 MUTATED OR51G2 WILD-TYPE
  I                1               47
  II               2               80
  III              3               57
  IV               0               29

Clustering(347) Variable = OR52B4 MUTATION ANALYSIS
D347V1, survival
                  sevent
clus2                0   1
  OR52B4 MUTATED     3   0
  OR52B4 WILD-TYPE 103  14
  OR52B4 MUTATED OR52B4 WILD-TYPE 
               3              117 
  OR52B4 MUTATED OR52B4 WILD-TYPE 
               0               14 
$`OR52B4 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AG-A002 
        0.99         1.02        20.94 

$`OR52B4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  OR52B4 MUTATED OR52B4 WILD-TYPE 
            0.99             0.92 
  OR52B4 MUTATED OR52B4 WILD-TYPE 
           20.94            72.07 
  OR52B4 MUTATED OR52B4 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE"   "OR52B4 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52B4 WILD-TYPE"   "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE"   "OR52B4 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52B4 WILD-TYPE"   "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE"   "OR52B4 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52B4 WILD-TYPE"   "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR52B4 MUTATED" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" "OR52B4 WILD-TYPE" 
[1] "hr="     "9200000"
D347V2, continuous
D347V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52B4 MUTATED      3    2
  OR52B4 WILD-TYPE  151   66
        clus
vv       OR52B4 MUTATED OR52B4 WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D347V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52B4 MUTATED      2    3
  OR52B4 WILD-TYPE  105  114
        clus
vv       OR52B4 MUTATED OR52B4 WILD-TYPE
  FEMALE              2              105
  MALE                3              114
D347V5, multiclass
                                clus
vv                               OR52B4 MUTATED OR52B4 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D347V6, multiclass
    clus
vv   OR52B4 MUTATED OR52B4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              0               17
D347V7, multiclass
    clus
vv   OR52B4 MUTATED OR52B4 WILD-TYPE
  N0              3              131
  N1              0               44
  N2              2               44
D347V8, multiclass
     clus
vv    OR52B4 MUTATED OR52B4 WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
D347V9, multiclass
     clus
vv    OR52B4 MUTATED OR52B4 WILD-TYPE
  I                1               47
  II               2               80
  III              1               59
  IV               1               28

Clustering(348) Variable = ZNF808 MUTATION ANALYSIS
D348V1, survival
                  sevent
clus2                0   1
  ZNF808 MUTATED     4   1
  ZNF808 WILD-TYPE 102  13
  ZNF808 MUTATED ZNF808 WILD-TYPE 
               5              115 
  ZNF808 MUTATED ZNF808 WILD-TYPE 
               1               13 
$`ZNF808 MUTATED`
TCGA-A6-3810 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3892 
        8.09         4.01        20.98        35.01         1.02 

$`ZNF808 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZNF808 MUTATED ZNF808 WILD-TYPE 
            1.02             0.92 
  ZNF808 MUTATED ZNF808 WILD-TYPE 
           35.01            72.07 
  ZNF808 MUTATED ZNF808 WILD-TYPE 
            8.09            10.98 
[1] "1.0 - 35.0 (8.1)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF808 WILD-TYPE"   "ZNF808 MUTATED" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" "ZNF808 WILD-TYPE" 
[1] "hr=" "1.9"
D348V2, continuous
D348V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF808 MUTATED      6    2
  ZNF808 WILD-TYPE  148   66
        clus
vv       ZNF808 MUTATED ZNF808 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D348V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF808 MUTATED      4    4
  ZNF808 WILD-TYPE  103  113
        clus
vv       ZNF808 MUTATED ZNF808 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
D348V5, multiclass
                                clus
vv                               ZNF808 MUTATED ZNF808 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D348V6, multiclass
    clus
vv   ZNF808 MUTATED ZNF808 WILD-TYPE
  T1              2                7
  T2              1               46
  T3              3              147
  T4              2               15
D348V7, multiclass
    clus
vv   ZNF808 MUTATED ZNF808 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              2               44
D348V8, multiclass
     clus
vv    ZNF808 MUTATED ZNF808 WILD-TYPE
  M0               7              182
  M1               1               30
  M1A              0                1
D348V9, multiclass
     clus
vv    ZNF808 MUTATED ZNF808 WILD-TYPE
  I                3               45
  II               3               79
  III              1               59
  IV               1               28

Clustering(349) Variable = OSBPL6 MUTATION ANALYSIS
D349V1, survival
                  sevent
clus2                0   1
  OSBPL6 MUTATED     4   0
  OSBPL6 WILD-TYPE 102  14
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
               4              116 
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
               0               14 
$`OSBPL6 MUTATED`
TCGA-AA-3811 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99        20.98         1.02        20.94 

$`OSBPL6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
            0.99             0.92 
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
           20.98            72.07 
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OSBPL6 WILD-TYPE"   "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OSBPL6 MUTATED" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" "OSBPL6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D349V2, continuous
D349V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OSBPL6 MUTATED      6    5
  OSBPL6 WILD-TYPE  148   63
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  COLON               6              148
  RECTUM              5               63
D349V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OSBPL6 MUTATED      8    3
  OSBPL6 WILD-TYPE   99  114
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  FEMALE              8               99
  MALE                3              114
D349V5, multiclass
                                clus
vv                               OSBPL6 MUTATED OSBPL6 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D349V6, multiclass
    clus
vv   OSBPL6 MUTATED OSBPL6 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              7              143
  T4              2               15
D349V7, multiclass
    clus
vv   OSBPL6 MUTATED OSBPL6 WILD-TYPE
  N0              7              127
  N1              2               42
  N2              2               44
D349V8, multiclass
     clus
vv    OSBPL6 MUTATED OSBPL6 WILD-TYPE
  M0               9              180
  M1               2               29
  M1A              0                1
D349V9, multiclass
     clus
vv    OSBPL6 MUTATED OSBPL6 WILD-TYPE
  I                2               46
  II               5               77
  III              2               58
  IV               2               27

Clustering(350) Variable = DNMT1 MUTATION ANALYSIS
D350V1, survival
                 sevent
clus2              0  1
  DNMT1 MUTATED   11  1
  DNMT1 WILD-TYPE 95 13
  DNMT1 MUTATED DNMT1 WILD-TYPE 
             12             108 
  DNMT1 MUTATED DNMT1 WILD-TYPE 
              1              13 
$`DNMT1 MUTATED`
TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-A00J TCGA-AA-A00N 
       15.52         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01Z TCGA-AF-2689 TCGA-AG-A002 TCGA-AG-A02N 
       20.98         1.02        20.98        15.85        20.94        61.94 

$`DNMT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
       13.02        12.00        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        26.01        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2691 TCGA-AF-2692 
       18.02        40.93        16.31         0.95        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  DNMT1 MUTATED DNMT1 WILD-TYPE 
           0.99            0.92 
  DNMT1 MUTATED DNMT1 WILD-TYPE 
          61.94           72.07 
  DNMT1 MUTATED DNMT1 WILD-TYPE 
         15.685          10.770 
[1] "1.0 - 61.9 (15.7)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" "DNMT1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE"   "DNMT1 MUTATED" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNMT1 MUTATED" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" "DNMT1 WILD-TYPE" 
[1] "hr=" "1.5"
D350V2, continuous
D350V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNMT1 MUTATED     12    5
  DNMT1 WILD-TYPE  142   63
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  COLON             12             142
  RECTUM             5              63
D350V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNMT1 MUTATED     11    6
  DNMT1 WILD-TYPE   96  111
        clus
vv       DNMT1 MUTATED DNMT1 WILD-TYPE
  FEMALE            11              96
  MALE               6             111
D350V5, multiclass
                                clus
vv                               DNMT1 MUTATED DNMT1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D350V6, multiclass
    clus
vv   DNMT1 MUTATED DNMT1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            10             140
  T4             4              13
D350V7, multiclass
    clus
vv   DNMT1 MUTATED DNMT1 WILD-TYPE
  N0            13             121
  N1             2              42
  N2             2              44
D350V8, multiclass
     clus
vv    DNMT1 MUTATED DNMT1 WILD-TYPE
  M0             15             174
  M1              2              29
  M1A             0               1
D350V9, multiclass
     clus
vv    DNMT1 MUTATED DNMT1 WILD-TYPE
  I               3              45
  II              9              73
  III             3              57
  IV              1              28

Clustering(351) Variable = ZNF583 MUTATION ANALYSIS
D351V1, survival
                  sevent
clus2               0  1
  ZNF583 MUTATED    7  0
  ZNF583 WILD-TYPE 99 14
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               7              113 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
               0               14 
$`ZNF583 MUTATED`
TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00O TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02        27.02        20.98         1.02        20.94 
TCGA-AG-A036 
       72.07 

$`ZNF583 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
        1.94        38.93        61.94        40.96        38.01 

  ZNF583 MUTATED ZNF583 WILD-TYPE 
            0.99             0.92 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
           72.07            70.03 
  ZNF583 MUTATED ZNF583 WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 72.1 (20.9)" "0.9 - 70.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF583 WILD-TYPE"   "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF583 MUTATED" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE" "ZNF583 WILD-TYPE"   "ZNF583 MUTATED" 
[1] "hr="     "7.4e+07"
D351V2, continuous
D351V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF583 MUTATED      4    3
  ZNF583 WILD-TYPE  150   65
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D351V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF583 MUTATED      3    4
  ZNF583 WILD-TYPE  104  113
        clus
vv       ZNF583 MUTATED ZNF583 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D351V5, multiclass
                                clus
vv                               ZNF583 MUTATED ZNF583 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D351V6, multiclass
    clus
vv   ZNF583 MUTATED ZNF583 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              3              147
  T4              1               16
D351V7, multiclass
    clus
vv   ZNF583 MUTATED ZNF583 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D351V8, multiclass
     clus
vv    ZNF583 MUTATED ZNF583 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D351V9, multiclass
     clus
vv    ZNF583 MUTATED ZNF583 WILD-TYPE
  I                2               46
  II               2               80
  III              2               58
  IV               0               29

Clustering(352) Variable = MAP2 MUTATION ANALYSIS
D352V1, survival
                sevent
clus2             0  1
  MAP2 MUTATED    8  2
  MAP2 WILD-TYPE 98 12
  MAP2 MUTATED MAP2 WILD-TYPE 
            10            110 
  MAP2 MUTATED MAP2 WILD-TYPE 
             2             12 
$`MAP2 MUTATED`
TCGA-A6-2672 TCGA-AA-3518 TCGA-AA-3818 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00J 
       16.54         1.02         0.99         0.99         1.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Z TCGA-AG-3892 
        4.01        20.98        20.98         1.02 

$`MAP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        26.01        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  MAP2 MUTATED MAP2 WILD-TYPE 
          0.99           0.92 
  MAP2 MUTATED MAP2 WILD-TYPE 
         20.98          72.07 
  MAP2 MUTATED MAP2 WILD-TYPE 
         2.515         11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
[1] "hr=" "2.6"
D352V2, continuous
D352V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED     14    2
  MAP2 WILD-TYPE  140   66
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  COLON            14            140
  RECTUM            2             66
D352V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED     11    5
  MAP2 WILD-TYPE   96  112
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  FEMALE           11             96
  MALE              5            112
D352V5, multiclass
                                clus
vv                               MAP2 MUTATED MAP2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D352V6, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  T1            1              8
  T2            1             46
  T3           11            139
  T4            3             14
D352V7, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  N0           11            123
  N1            5             39
  N2            0             46
D352V8, multiclass
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  M0            16            173
  M1             0             31
  M1A            0              1
D352V9, multiclass
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  I              2             46
  II             9             73
  III            5             55
  IV             0             29

Clustering(353) Variable = OR13C3 MUTATION ANALYSIS
D353V1, survival
                  sevent
clus2                0   1
  OR13C3 MUTATED     2   0
  OR13C3 WILD-TYPE 104  14
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               2              118 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               0               14 
$`OR13C3 MUTATED`
TCGA-AA-3854 TCGA-AA-3977 
        1.02         1.02 

$`OR13C3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02             0.92 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02            72.07 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
[1] "Remove cluster labels:" "OR13C3 MUTATED"        
clus
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3877       TCGA-AA-3939 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986       TCGA-AA-A004 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691       TCGA-AF-2692 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581       TCGA-AG-3582 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
D353V2, continuous
D353V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C3 MUTATED      5    0
  OR13C3 WILD-TYPE  149   68
        clus
vv       OR13C3 MUTATED OR13C3 WILD-TYPE
  COLON               5              149
  RECTUM              0               68
D353V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C3 MUTATED      2    3
  OR13C3 WILD-TYPE  105  114
        clus
vv       OR13C3 MUTATED OR13C3 WILD-TYPE
  FEMALE              2              105
  MALE                3              114
D353V5, multiclass
                                clus
vv                               OR13C3 MUTATED OR13C3 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D353V6, multiclass
    clus
vv   OR13C3 MUTATED OR13C3 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              2              148
  T4              1               16
D353V7, multiclass
    clus
vv   OR13C3 MUTATED OR13C3 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              0               46
D353V8, multiclass
     clus
vv    OR13C3 MUTATED OR13C3 WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
D353V9, multiclass
     clus
vv    OR13C3 MUTATED OR13C3 WILD-TYPE
  I                1               47
  II               3               79
  III              0               60
  IV               0               29

Clustering(354) Variable = ST6GALNAC5 MUTATION ANALYSIS
D354V1, survival
                      sevent
clus2                    0   1
  ST6GALNAC5 MUTATED     3   1
  ST6GALNAC5 WILD-TYPE 103  13
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   4                  116 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   1                   13 
$`ST6GALNAC5 MUTATED`
TCGA-AA-A00O TCGA-AA-A01P TCGA-AG-A002 TCGA-AG-A02X 
       27.02        38.07        20.94        40.96 

$`ST6GALNAC5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00         4.01        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
               20.94                 0.92 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
               40.96                72.07 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
              32.545               10.505 
[1] "20.9 - 41.0 (32.5)" "0.9 - 72.1 (10.5)" 
          TCGA-A6-2670           TCGA-A6-2672           TCGA-A6-2674 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2676           TCGA-A6-2677           TCGA-A6-2678 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2683           TCGA-A6-3807           TCGA-A6-3808 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3518           TCGA-AA-3526 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3562           TCGA-AA-3666 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3685           TCGA-AA-3710 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3715           TCGA-AA-3811           TCGA-AA-3818 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3837           TCGA-AA-3842           TCGA-AA-3844 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3854 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3939           TCGA-AA-3941 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3947           TCGA-AA-3949           TCGA-AA-3952 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3966           TCGA-AA-3975           TCGA-AA-3977 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3986           TCGA-AA-A004           TCGA-AA-A00A 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00N           TCGA-AA-A00O           TCGA-AA-A00Q 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00R           TCGA-AA-A00U           TCGA-AA-A00W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00Z           TCGA-AA-A010           TCGA-AA-A017 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01D           TCGA-AA-A01F           TCGA-AA-A01G 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01I           TCGA-AA-A01K           TCGA-AA-A01P 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-AA-A01Q           TCGA-AA-A01R           TCGA-AA-A01S 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01T           TCGA-AA-A01V           TCGA-AA-A01X 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01Z           TCGA-AA-A024           TCGA-AA-A029 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02F           TCGA-AA-A02H           TCGA-AA-A02J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02O           TCGA-AA-A02W           TCGA-AA-A02Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A03F           TCGA-AA-A03J           TCGA-AY-4070 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AY-4071           TCGA-AF-2689           TCGA-AF-2691 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AF-2692           TCGA-AF-3400           TCGA-AF-3913 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3581           TCGA-AG-3582           TCGA-AG-3583 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3587           TCGA-AG-3599           TCGA-AG-3726 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3892           TCGA-AG-3893           TCGA-AG-3894 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3999           TCGA-AG-4001           TCGA-AG-4007 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-4008           TCGA-AG-A002           TCGA-AG-A008 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A00C           TCGA-AG-A00H           TCGA-AG-A00Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A011           TCGA-AG-A014           TCGA-AG-A015 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A016           TCGA-AG-A01L           TCGA-AG-A01W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A01Y           TCGA-AG-A020           TCGA-AG-A025 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02N 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A02X           TCGA-AG-A032           TCGA-AG-A036 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2670           TCGA-A6-2672           TCGA-A6-2674 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2676           TCGA-A6-2677           TCGA-A6-2678 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2683           TCGA-A6-3807           TCGA-A6-3808 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3518           TCGA-AA-3526 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3562           TCGA-AA-3666 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3685           TCGA-AA-3710 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3715           TCGA-AA-3811           TCGA-AA-3818 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3837           TCGA-AA-3842           TCGA-AA-3844 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3854 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3939           TCGA-AA-3941 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3947           TCGA-AA-3949           TCGA-AA-3952 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3966           TCGA-AA-3975           TCGA-AA-3977 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3986           TCGA-AA-A004           TCGA-AA-A00A 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00N           TCGA-AA-A00O           TCGA-AA-A00Q 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00R           TCGA-AA-A00U           TCGA-AA-A00W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00Z           TCGA-AA-A010           TCGA-AA-A017 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01D           TCGA-AA-A01F           TCGA-AA-A01G 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01I           TCGA-AA-A01K           TCGA-AA-A01P 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-AA-A01Q           TCGA-AA-A01R           TCGA-AA-A01S 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01T           TCGA-AA-A01V           TCGA-AA-A01X 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01Z           TCGA-AA-A024           TCGA-AA-A029 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02F           TCGA-AA-A02H           TCGA-AA-A02J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02O           TCGA-AA-A02W           TCGA-AA-A02Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A03F           TCGA-AA-A03J           TCGA-AY-4070 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AY-4071           TCGA-AF-2689           TCGA-AF-2691 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AF-2692           TCGA-AF-3400           TCGA-AF-3913 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3581           TCGA-AG-3582           TCGA-AG-3583 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3587           TCGA-AG-3599           TCGA-AG-3726 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3892           TCGA-AG-3893           TCGA-AG-3894 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3999           TCGA-AG-4001           TCGA-AG-4007 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-4008           TCGA-AG-A002           TCGA-AG-A008 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A00C           TCGA-AG-A00H           TCGA-AG-A00Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A011           TCGA-AG-A014           TCGA-AG-A015 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A016           TCGA-AG-A01L           TCGA-AG-A01W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A01Y           TCGA-AG-A020           TCGA-AG-A025 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02N 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A02X           TCGA-AG-A032           TCGA-AG-A036 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2670           TCGA-A6-2672           TCGA-A6-2674 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2676           TCGA-A6-2677           TCGA-A6-2678 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-2683           TCGA-A6-3807           TCGA-A6-3808 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-A6-3810           TCGA-AA-3518           TCGA-AA-3526 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3555           TCGA-AA-3562           TCGA-AA-3666 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3679           TCGA-AA-3685           TCGA-AA-3710 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3715           TCGA-AA-3811           TCGA-AA-3818 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3837           TCGA-AA-3842           TCGA-AA-3844 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3846           TCGA-AA-3848           TCGA-AA-3854 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3877           TCGA-AA-3939           TCGA-AA-3941 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3947           TCGA-AA-3949           TCGA-AA-3952 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3966           TCGA-AA-3975           TCGA-AA-3977 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-3986           TCGA-AA-A004           TCGA-AA-A00A 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00D           TCGA-AA-A00E           TCGA-AA-A00F 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00J           TCGA-AA-A00K           TCGA-AA-A00L 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00N           TCGA-AA-A00O           TCGA-AA-A00Q 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00R           TCGA-AA-A00U           TCGA-AA-A00W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A00Z           TCGA-AA-A010           TCGA-AA-A017 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01D           TCGA-AA-A01F           TCGA-AA-A01G 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01I           TCGA-AA-A01K           TCGA-AA-A01P 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" 
          TCGA-AA-A01Q           TCGA-AA-A01R           TCGA-AA-A01S 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01T           TCGA-AA-A01V           TCGA-AA-A01X 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A01Z           TCGA-AA-A024           TCGA-AA-A029 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02F           TCGA-AA-A02H           TCGA-AA-A02J 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A02O           TCGA-AA-A02W           TCGA-AA-A02Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AA-A03F           TCGA-AA-A03J           TCGA-AY-4070 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AY-4071           TCGA-AF-2689           TCGA-AF-2691 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AF-2692           TCGA-AF-3400           TCGA-AF-3913 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3581           TCGA-AG-3582           TCGA-AG-3583 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3587           TCGA-AG-3599           TCGA-AG-3726 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3727           TCGA-AG-3878           TCGA-AG-3887 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3892           TCGA-AG-3893           TCGA-AG-3894 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-3999           TCGA-AG-4001           TCGA-AG-4007 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-4008           TCGA-AG-A002           TCGA-AG-A008 
"ST6GALNAC5 WILD-TYPE"   "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A00C           TCGA-AG-A00H           TCGA-AG-A00Y 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A011           TCGA-AG-A014           TCGA-AG-A015 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A016           TCGA-AG-A01L           TCGA-AG-A01W 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A01Y           TCGA-AG-A020           TCGA-AG-A025 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A026           TCGA-AG-A02G           TCGA-AG-A02N 
"ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
          TCGA-AG-A02X           TCGA-AG-A032           TCGA-AG-A036 
  "ST6GALNAC5 MUTATED" "ST6GALNAC5 WILD-TYPE" "ST6GALNAC5 WILD-TYPE" 
[1] "hr=" "1"  
D354V2, continuous
D354V3, binary
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC5 MUTATED      4    2
  ST6GALNAC5 WILD-TYPE  150   66
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  COLON                   4                  150
  RECTUM                  2                   66
D354V4, binary
[1] "tbl2"
                      cls
clus                   [,1] [,2]
  ST6GALNAC5 MUTATED      3    3
  ST6GALNAC5 WILD-TYPE  104  114
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  FEMALE                  3                  104
  MALE                    3                  114
D354V5, multiclass
                                clus
vv                               ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  COLON ADENOCARCINOMA                            3                  125
  COLON MUCINOUS ADENOCARCINOMA                   1                   23
  RECTAL ADENOCARCINOMA                           2                   55
  RECTAL MUCINOUS ADENOCARCINOMA                  0                    8
D354V6, multiclass
    clus
vv   ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  T1                  0                    9
  T2                  3                   44
  T3                  2                  148
  T4                  1                   16
D354V7, multiclass
    clus
vv   ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  N0                  4                  130
  N1                  1                   43
  N2                  1                   45
D354V8, multiclass
     clus
vv    ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  M0                   6                  183
  M1                   0                   31
  M1A                  0                    1
D354V9, multiclass
     clus
vv    ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  I                    3                   45
  II                   1                   81
  III                  2                   58
  IV                   0                   29

Clustering(355) Variable = FCRL5 MUTATION ANALYSIS
D355V1, survival
                 sevent
clus2               0   1
  FCRL5 MUTATED     6   0
  FCRL5 WILD-TYPE 100  14
  FCRL5 MUTATED FCRL5 WILD-TYPE 
              6             114 
  FCRL5 MUTATED FCRL5 WILD-TYPE 
              0              14 
$`FCRL5 MUTATED`
TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y 
        0.99         1.02        20.98         1.02        20.94        23.01 

$`FCRL5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  FCRL5 MUTATED FCRL5 WILD-TYPE 
           0.99            0.92 
  FCRL5 MUTATED FCRL5 WILD-TYPE 
          23.01           72.07 
  FCRL5 MUTATED FCRL5 WILD-TYPE 
          10.98           10.95 
[1] "1.0 - 23.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FCRL5 WILD-TYPE"   "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
  "FCRL5 MUTATED" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" "FCRL5 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D355V2, continuous
D355V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL5 MUTATED      6    5
  FCRL5 WILD-TYPE  148   63
        clus
vv       FCRL5 MUTATED FCRL5 WILD-TYPE
  COLON              6             148
  RECTUM             5              63
D355V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL5 MUTATED      8    3
  FCRL5 WILD-TYPE   99  114
        clus
vv       FCRL5 MUTATED FCRL5 WILD-TYPE
  FEMALE             8              99
  MALE               3             114
D355V5, multiclass
                                clus
vv                               FCRL5 MUTATED FCRL5 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D355V6, multiclass
    clus
vv   FCRL5 MUTATED FCRL5 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             7             143
  T4             2              15
D355V7, multiclass
    clus
vv   FCRL5 MUTATED FCRL5 WILD-TYPE
  N0            10             124
  N1             0              44
  N2             1              45
D355V8, multiclass
     clus
vv    FCRL5 MUTATED FCRL5 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D355V9, multiclass
     clus
vv    FCRL5 MUTATED FCRL5 WILD-TYPE
  I               2              46
  II              8              74
  III             1              59
  IV              0              29

Clustering(356) Variable = ZNF677 MUTATION ANALYSIS
D356V1, survival
                  sevent
clus2                0   1
  ZNF677 MUTATED     6   0
  ZNF677 WILD-TYPE 100  14
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               6              114 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               0               14 
$`ZNF677 MUTATED`
TCGA-A6-2672 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-A002 
       16.54         0.99         0.99         1.02        20.98        20.94 

$`ZNF677 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF677 MUTATED ZNF677 WILD-TYPE 
            0.99             0.92 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
           20.98            72.07 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
            8.78            10.95 
[1] "1.0 - 21.0 (8.8)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D356V2, continuous
D356V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      8    1
  ZNF677 WILD-TYPE  146   67
        clus
vv       ZNF677 MUTATED ZNF677 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D356V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      4    5
  ZNF677 WILD-TYPE  103  112
        clus
vv       ZNF677 MUTATED ZNF677 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
D356V5, multiclass
                                clus
vv                               ZNF677 MUTATED ZNF677 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D356V6, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              4              146
  T4              2               15
D356V7, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              1               45
D356V8, multiclass
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
D356V9, multiclass
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               0               29

Clustering(357) Variable = DNAH11 MUTATION ANALYSIS
D357V1, survival
                  sevent
clus2               0  1
  DNAH11 MUTATED    7  3
  DNAH11 WILD-TYPE 99 11
  DNAH11 MUTATED DNAH11 WILD-TYPE 
              10              110 
  DNAH11 MUTATED DNAH11 WILD-TYPE 
               3               11 
$`DNAH11 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3854 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02         1.02         4.01        20.98 
TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A026 
       10.39         1.02        20.94         1.94 

$`DNAH11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 
        0.95        15.85        10.62        13.55        12.72         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        49.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DNAH11 MUTATED DNAH11 WILD-TYPE 
            0.99             0.92 
  DNAH11 MUTATED DNAH11 WILD-TYPE 
           20.98            72.07 
  DNAH11 MUTATED DNAH11 WILD-TYPE 
            1.48            12.00 
[1] "1.0 - 21.0 (1.5)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED"   "DNAH11 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED"   "DNAH11 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED"   "DNAH11 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "DNAH11 MUTATED" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE"   "DNAH11 MUTATED" "DNAH11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" "DNAH11 WILD-TYPE" 
[1] "hr=" "5.4"
D357V2, continuous
D357V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNAH11 MUTATED     13    5
  DNAH11 WILD-TYPE  141   63
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  COLON              13              141
  RECTUM              5               63
D357V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  DNAH11 MUTATED      8   10
  DNAH11 WILD-TYPE   99  107
        clus
vv       DNAH11 MUTATED DNAH11 WILD-TYPE
  FEMALE              8               99
  MALE               10              107
D357V5, multiclass
                                clus
vv                               DNAH11 MUTATED DNAH11 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D357V6, multiclass
    clus
vv   DNAH11 MUTATED DNAH11 WILD-TYPE
  T1              1                8
  T2              5               42
  T3              9              141
  T4              3               14
D357V7, multiclass
    clus
vv   DNAH11 MUTATED DNAH11 WILD-TYPE
  N0             11              123
  N1              3               41
  N2              4               42
D357V8, multiclass
     clus
vv    DNAH11 MUTATED DNAH11 WILD-TYPE
  M0              13              176
  M1               4               27
  M1A              0                1
D357V9, multiclass
     clus
vv    DNAH11 MUTATED DNAH11 WILD-TYPE
  I                4               44
  II               6               76
  III              3               57
  IV               3               26

Clustering(358) Variable = RIMS2 MUTATION ANALYSIS
D358V1, survival
                 sevent
clus2               0   1
  RIMS2 MUTATED     4   2
  RIMS2 WILD-TYPE 102  12
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              6             114 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              2              12 
$`RIMS2 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 TCGA-AG-A002 
        0.99         1.02         4.01        20.98        39.06        20.94 

$`RIMS2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.99            0.92 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          39.06           72.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
         12.475          10.950 
[1] "1.0 - 39.1 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
[1] "hr=" "2.5"
D358V2, continuous
D358V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     12    1
  RIMS2 WILD-TYPE  142   67
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON             12             142
  RECTUM             1              67
D358V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      7    6
  RIMS2 WILD-TYPE  100  111
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
D358V5, multiclass
                                clus
vv                               RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D358V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             7             143
  T4             3              14
D358V7, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
D358V8, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  M0             10             179
  M1              2              29
  M1A             0               1
D358V9, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              2              27

Clustering(359) Variable = PWP1 MUTATION ANALYSIS
D359V1, survival
                sevent
clus2              0   1
  PWP1 MUTATED     2   1
  PWP1 WILD-TYPE 104  13
  PWP1 MUTATED PWP1 WILD-TYPE 
             3            117 
  PWP1 MUTATED PWP1 WILD-TYPE 
             1             13 
$`PWP1 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AG-A002 
        1.02         4.01        20.94 

$`PWP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  PWP1 MUTATED PWP1 WILD-TYPE 
          1.02           0.92 
  PWP1 MUTATED PWP1 WILD-TYPE 
         20.94          72.07 
  PWP1 MUTATED PWP1 WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 20.9 (4.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
[1] "hr=" "3.7"
D359V2, continuous
D359V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      7    1
  PWP1 WILD-TYPE  147   67
        clus
vv       PWP1 MUTATED PWP1 WILD-TYPE
  COLON             7            147
  RECTUM            1             67
D359V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      2    6
  PWP1 WILD-TYPE  105  111
        clus
vv       PWP1 MUTATED PWP1 WILD-TYPE
  FEMALE            2            105
  MALE              6            111
D359V5, multiclass
                                clus
vv                               PWP1 MUTATED PWP1 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D359V6, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  T1            0              9
  T2            3             44
  T3            4            146
  T4            1             16
D359V7, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            1             45
D359V8, multiclass
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D359V9, multiclass
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  I              3             45
  II             2             80
  III            2             58
  IV             1             28

Clustering(360) Variable = ARMC4 MUTATION ANALYSIS
D360V1, survival
                 sevent
clus2               0   1
  ARMC4 MUTATED     5   1
  ARMC4 WILD-TYPE 101  13
  ARMC4 MUTATED ARMC4 WILD-TYPE 
              6             114 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
              1              13 
$`ARMC4 MUTATED`
TCGA-A6-3808 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        9.14         1.02        18.02         4.01        20.98        20.94 

$`ARMC4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ARMC4 MUTATED ARMC4 WILD-TYPE 
           1.02            0.92 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
          20.98           72.07 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
          13.58           10.95 
[1] "1.0 - 21.0 (13.6)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARMC4 WILD-TYPE"   "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARMC4 MUTATED" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" "ARMC4 WILD-TYPE" 
[1] "hr=" "1.4"
D360V2, continuous
D360V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARMC4 MUTATED      8    3
  ARMC4 WILD-TYPE  146   65
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D360V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARMC4 MUTATED      5    6
  ARMC4 WILD-TYPE  102  111
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
D360V5, multiclass
                                clus
vv                               ARMC4 MUTATED ARMC4 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D360V6, multiclass
    clus
vv   ARMC4 MUTATED ARMC4 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             5             145
  T4             3              14
D360V7, multiclass
    clus
vv   ARMC4 MUTATED ARMC4 WILD-TYPE
  N0             7             127
  N1             2              42
  N2             2              44
D360V8, multiclass
     clus
vv    ARMC4 MUTATED ARMC4 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
D360V9, multiclass
     clus
vv    ARMC4 MUTATED ARMC4 WILD-TYPE
  I               2              46
  II              4              78
  III             3              57
  IV              1              28

Clustering(361) Variable = CNTNAP4 MUTATION ANALYSIS
D361V1, survival
                   sevent
clus2                 0   1
  CNTNAP4 MUTATED     4   2
  CNTNAP4 WILD-TYPE 102  12
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                6               114 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                2                12 
$`CNTNAP4 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A024 TCGA-AG-A002 
        1.02         4.01        27.02        20.98        39.06        20.94 

$`CNTNAP4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             1.02              0.92 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            39.06             72.07 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            20.96             10.77 
[1] "1.0 - 39.1 (21.0)" "0.9 - 72.1 (10.8)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "2.1"
D361V2, continuous
D361V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED     10    1
  CNTNAP4 WILD-TYPE  144   67
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON               10               144
  RECTUM               1                67
D361V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5    6
  CNTNAP4 WILD-TYPE  102  111
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5               102
  MALE                 6               111
D361V5, multiclass
                                clus
vv                               CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D361V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               6               144
  T4               3                14
D361V7, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0              10               124
  N1               0                44
  N2               1                45
D361V8, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
D361V9, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                 1                47
  II                8                74
  III               1                59
  IV                0                29

Clustering(362) Variable = OR4A5 MUTATION ANALYSIS
D362V1, survival
                 sevent
clus2               0   1
  OR4A5 MUTATED     4   1
  OR4A5 WILD-TYPE 102  13
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              5             115 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              1              13 
$`OR4A5 MUTATED`
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-4008 
        4.01        27.02        20.98         1.02         1.02 

$`OR4A5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02        17.00        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR4A5 MUTATED OR4A5 WILD-TYPE 
           1.02            0.92 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          27.02           72.07 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 27.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
[1] "hr=" "2.1"
D362V2, continuous
D362V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      3    2
  OR4A5 WILD-TYPE  151   66
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  COLON              3             151
  RECTUM             2              66
D362V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      3    2
  OR4A5 WILD-TYPE  104  115
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D362V5, multiclass
                                clus
vv                               OR4A5 MUTATED OR4A5 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D362V6, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             2             148
  T4             2              15
D362V7, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  N0             4             130
  N1             0              44
  N2             1              45
D362V8, multiclass
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D362V9, multiclass
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  I               1              47
  II              3              79
  III             1              59
  IV              0              29

Clustering(363) Variable = PSG7 MUTATION ANALYSIS
D363V1, survival
                sevent
clus2              0   1
  PSG7 MUTATED     3   0
  PSG7 WILD-TYPE 103  14
  PSG7 MUTATED PSG7 WILD-TYPE 
             3            117 
  PSG7 MUTATED PSG7 WILD-TYPE 
             0             14 
$`PSG7 MUTATED`
TCGA-AA-3811 TCGA-AA-A010 TCGA-AA-A02O 
        0.99        20.98         0.92 

$`PSG7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  PSG7 MUTATED PSG7 WILD-TYPE 
          0.92           0.92 
  PSG7 MUTATED PSG7 WILD-TYPE 
         20.98          72.07 
  PSG7 MUTATED PSG7 WILD-TYPE 
          0.99          10.98 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
[1] "hr="     "9200000"
D363V2, continuous
D363V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG7 MUTATED      5    0
  PSG7 WILD-TYPE  149   68
        clus
vv       PSG7 MUTATED PSG7 WILD-TYPE
  COLON             5            149
  RECTUM            0             68
D363V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG7 MUTATED      3    2
  PSG7 WILD-TYPE  104  115
        clus
vv       PSG7 MUTATED PSG7 WILD-TYPE
  FEMALE            3            104
  MALE              2            115
D363V5, multiclass
                                clus
vv                               PSG7 MUTATED PSG7 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D363V6, multiclass
    clus
vv   PSG7 MUTATED PSG7 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            2            148
  T4            2             15
D363V7, multiclass
    clus
vv   PSG7 MUTATED PSG7 WILD-TYPE
  N0            2            132
  N1            1             43
  N2            2             44
D363V8, multiclass
     clus
vv    PSG7 MUTATED PSG7 WILD-TYPE
  M0             4            185
  M1             1             30
  M1A            0              1
D363V9, multiclass
     clus
vv    PSG7 MUTATED PSG7 WILD-TYPE
  I              0             48
  II             2             80
  III            2             58
  IV             1             28

Clustering(364) Variable = ST8SIA3 MUTATION ANALYSIS
D364V1, survival
                   sevent
clus2                 0   1
  ST8SIA3 MUTATED     5   0
  ST8SIA3 WILD-TYPE 101  14
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                5               115 
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
                0                14 
$`ST8SIA3 MUTATED`
TCGA-AA-3977 TCGA-AA-A00J TCGA-AG-3582 TCGA-AG-3894 TCGA-AG-A002 
        1.02        18.02         1.02         0.99        20.94 

$`ST8SIA3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 
       10.62        13.55        12.72        10.39         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
             0.99              0.92 
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
            20.94             72.07 
  ST8SIA3 MUTATED ST8SIA3 WILD-TYPE 
             1.02             10.98 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE"   "ST8SIA3 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ST8SIA3 MUTATED" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" "ST8SIA3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D364V2, continuous
D364V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST8SIA3 MUTATED      3    3
  ST8SIA3 WILD-TYPE  151   65
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  COLON                3               151
  RECTUM               3                65
D364V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ST8SIA3 MUTATED      0    6
  ST8SIA3 WILD-TYPE  107  111
        clus
vv       ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  FEMALE               0               107
  MALE                 6               111
D364V5, multiclass
                                clus
vv                               ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D364V6, multiclass
    clus
vv   ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               2               148
  T4               1                16
D364V7, multiclass
    clus
vv   ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  N0               4               130
  N1               2                42
  N2               0                46
D364V8, multiclass
     clus
vv    ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  M0                4               185
  M1                1                30
  M1A               0                 1
D364V9, multiclass
     clus
vv    ST8SIA3 MUTATED ST8SIA3 WILD-TYPE
  I                 2                46
  II                1                81
  III               1                59
  IV                1                28

Clustering(365) Variable = UNC5C MUTATION ANALYSIS
D365V1, survival
                 sevent
clus2               0   1
  UNC5C MUTATED     6   2
  UNC5C WILD-TYPE 100  12
  UNC5C MUTATED UNC5C WILD-TYPE 
              8             112 
  UNC5C MUTATED UNC5C WILD-TYPE 
              2              12 
$`UNC5C MUTATED`
TCGA-AA-3518 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01S TCGA-AA-A01T 
        1.02         4.01        20.98         0.99         1.02        33.04 
TCGA-AG-3892 TCGA-AG-A026 
        1.02         1.94 

$`UNC5C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X 
       13.02        38.07         1.02        35.01        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98        49.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  UNC5C MUTATED UNC5C WILD-TYPE 
           0.99            0.92 
  UNC5C MUTATED UNC5C WILD-TYPE 
          33.04           72.07 
  UNC5C MUTATED UNC5C WILD-TYPE 
           1.48           12.00 
[1] "1.0 - 33.0 (1.5)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UNC5C MUTATED" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED"   "UNC5C MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UNC5C MUTATED" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED"   "UNC5C MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "UNC5C MUTATED" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED"   "UNC5C MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE"   "UNC5C MUTATED" "UNC5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" "UNC5C WILD-TYPE" 
[1] "hr=" "3.9"
D365V2, continuous
D365V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5C MUTATED      8    3
  UNC5C WILD-TYPE  146   65
        clus
vv       UNC5C MUTATED UNC5C WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D365V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  UNC5C MUTATED      7    4
  UNC5C WILD-TYPE  100  113
        clus
vv       UNC5C MUTATED UNC5C WILD-TYPE
  FEMALE             7             100
  MALE               4             113
D365V5, multiclass
                                clus
vv                               UNC5C MUTATED UNC5C WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D365V6, multiclass
    clus
vv   UNC5C MUTATED UNC5C WILD-TYPE
  T1             1               8
  T2             0              47
  T3             5             145
  T4             5              12
D365V7, multiclass
    clus
vv   UNC5C MUTATED UNC5C WILD-TYPE
  N0             6             128
  N1             4              40
  N2             1              45
D365V8, multiclass
     clus
vv    UNC5C MUTATED UNC5C WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D365V9, multiclass
     clus
vv    UNC5C MUTATED UNC5C WILD-TYPE
  I               1              47
  II              5              77
  III             5              55
  IV              0              29

Clustering(366) Variable = KCNT2 MUTATION ANALYSIS
D366V1, survival
                 sevent
clus2               0   1
  KCNT2 MUTATED     5   0
  KCNT2 WILD-TYPE 101  14
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              5             115 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              0              14 
$`KCNT2 MUTATED`
TCGA-AA-3715 TCGA-AA-3844 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01W 
        0.99         0.92         1.02        20.94        70.03 

$`KCNT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 
       15.91        13.02         1.02        12.00        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  KCNT2 MUTATED KCNT2 WILD-TYPE 
           0.92            0.92 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
          70.03           72.07 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
           1.02           10.98 
[1] "0.9 - 70.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D366V2, continuous
D366V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      6    5
  KCNT2 WILD-TYPE  148   63
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  COLON              6             148
  RECTUM             5              63
D366V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      8    3
  KCNT2 WILD-TYPE   99  114
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  FEMALE             8              99
  MALE               3             114
D366V5, multiclass
                                clus
vv                               KCNT2 MUTATED KCNT2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D366V6, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             0              17
D366V7, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             3              43
D366V8, multiclass
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  M0             11             178
  M1              0              31
  M1A             0               1
D366V9, multiclass
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  I               3              45
  II              4              78
  III             4              56
  IV              0              29

Clustering(367) Variable = PCDHB7 MUTATION ANALYSIS
D367V1, survival
                  sevent
clus2               0  1
  PCDHB7 MUTATED    8  1
  PCDHB7 WILD-TYPE 98 13
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
               9              111 
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
               1               13 
$`PCDHB7 MUTATED`
TCGA-AA-3949 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A01T TCGA-AA-A02W 
        0.99         4.01        20.98        13.02        33.04        40.96 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01W 
        1.02        20.94        70.03 

$`PCDHB7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99        15.02         0.99        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
            0.99             0.92 
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
           70.03            72.07 
  PCDHB7 MUTATED PCDHB7 WILD-TYPE 
           20.94            10.62 
[1] "1.0 - 70.0 (20.9)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE"   "PCDHB7 MUTATED" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" "PCDHB7 WILD-TYPE" 
[1] "hr=" "1.6"
D367V2, continuous
D367V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB7 MUTATED      7    4
  PCDHB7 WILD-TYPE  147   64
        clus
vv       PCDHB7 MUTATED PCDHB7 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D367V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB7 MUTATED      7    4
  PCDHB7 WILD-TYPE  100  113
        clus
vv       PCDHB7 MUTATED PCDHB7 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
D367V5, multiclass
                                clus
vv                               PCDHB7 MUTATED PCDHB7 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D367V6, multiclass
    clus
vv   PCDHB7 MUTATED PCDHB7 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              5              145
  T4              2               15
D367V7, multiclass
    clus
vv   PCDHB7 MUTATED PCDHB7 WILD-TYPE
  N0              8              126
  N1              3               41
  N2              0               46
D367V8, multiclass
     clus
vv    PCDHB7 MUTATED PCDHB7 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
D367V9, multiclass
     clus
vv    PCDHB7 MUTATED PCDHB7 WILD-TYPE
  I                4               44
  II               4               78
  III              3               57
  IV               0               29

Clustering(368) Variable = ADAMTS16 MUTATION ANALYSIS
D368V1, survival
                    sevent
clus2                  0   1
  ADAMTS16 MUTATED     6   3
  ADAMTS16 WILD-TYPE 100  11
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                 9                111 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                 3                 11 
$`ADAMTS16 MUTATED`
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        1.02         0.99         1.02         4.01        20.98        12.00 
TCGA-AY-4071 TCGA-AG-A026 TCGA-AG-A036 
        0.95         1.94        72.07 

$`ADAMTS16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98        49.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       61.94        40.96        38.01 

  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
              0.95               0.92 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             72.07              70.03 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
              1.94              12.00 
[1] "0.9 - 72.1 (1.9)"  "0.9 - 70.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
[1] "hr=" "3.9"
D368V2, continuous
D368V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      8    2
  ADAMTS16 WILD-TYPE  146   66
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  COLON                 8                146
  RECTUM                2                 66
D368V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      4    7
  ADAMTS16 WILD-TYPE  103  110
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  FEMALE                4                103
  MALE                  7                110
D368V5, multiclass
                                clus
vv                               ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  COLON ADENOCARCINOMA                          6                122
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
D368V6, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  T1                1                  8
  T2                4                 43
  T3                3                147
  T4                3                 14
D368V7, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  N0                9                125
  N1                0                 44
  N2                2                 44
D368V8, multiclass
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  M0                 9                180
  M1                 0                 31
  M1A                0                  1
D368V9, multiclass
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  I                  3                 45
  II                 5                 77
  III                2                 58
  IV                 0                 29

Clustering(369) Variable = GRM7 MUTATION ANALYSIS
D369V1, survival
                sevent
clus2             0  1
  GRM7 MUTATED    7  1
  GRM7 WILD-TYPE 99 13
  GRM7 MUTATED GRM7 WILD-TYPE 
             8            112 
  GRM7 MUTATED GRM7 WILD-TYPE 
             1             13 
$`GRM7 MUTATED`
TCGA-A6-2670 TCGA-AA-3844 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A02W TCGA-AG-3726 
       13.91         0.92         0.99         4.01        40.96         1.02 
TCGA-AG-4007 TCGA-AG-A002 
        1.02        20.94 

$`GRM7 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  GRM7 MUTATED GRM7 WILD-TYPE 
          0.92           0.92 
  GRM7 MUTATED GRM7 WILD-TYPE 
         40.96          72.07 
  GRM7 MUTATED GRM7 WILD-TYPE 
         2.515         11.490 
[1] "0.9 - 41.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE"   "GRM7 MUTATED" "GRM7 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "GRM7 MUTATED" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" "GRM7 WILD-TYPE" 
[1] "hr=" "1.2"
D369V2, continuous
D369V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM7 MUTATED      8    3
  GRM7 WILD-TYPE  146   65
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  COLON             8            146
  RECTUM            3             65
D369V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRM7 MUTATED      7    4
  GRM7 WILD-TYPE  100  113
        clus
vv       GRM7 MUTATED GRM7 WILD-TYPE
  FEMALE            7            100
  MALE              4            113
D369V5, multiclass
                                clus
vv                               GRM7 MUTATED GRM7 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D369V6, multiclass
    clus
vv   GRM7 MUTATED GRM7 WILD-TYPE
  T1            0              9
  T2            3             44
  T3            4            146
  T4            4             13
D369V7, multiclass
    clus
vv   GRM7 MUTATED GRM7 WILD-TYPE
  N0            8            126
  N1            0             44
  N2            3             43
D369V8, multiclass
     clus
vv    GRM7 MUTATED GRM7 WILD-TYPE
  M0             9            180
  M1             2             29
  M1A            0              1
D369V9, multiclass
     clus
vv    GRM7 MUTATED GRM7 WILD-TYPE
  I              3             45
  II             5             77
  III            1             59
  IV             2             27

Clustering(370) Variable = OR2L3 MUTATION ANALYSIS
D370V1, survival
                 sevent
clus2               0   1
  OR2L3 MUTATED     3   1
  OR2L3 WILD-TYPE 103  13
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              4             116 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              1              13 
$`OR2L3 MUTATED`
TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3887 
        0.99         4.01        20.98         0.92 

$`OR2L3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 
        1.02         0.99         1.02         0.95         0.99         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
           0.92            0.92 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          20.98           72.07 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
           2.50           11.49 
[1] "0.9 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
[1] "hr=" "4.1"
D370V2, continuous
D370V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      5    1
  OR2L3 WILD-TYPE  149   67
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D370V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      3    3
  OR2L3 WILD-TYPE  104  114
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             3             104
  MALE               3             114
D370V5, multiclass
                                clus
vv                               OR2L3 MUTATED OR2L3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
D370V6, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             3              14
D370V7, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             0              46
D370V8, multiclass
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D370V9, multiclass
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  I               0              48
  II              6              76
  III             0              60
  IV              0              29

Clustering(371) Variable = ZNF292 MUTATION ANALYSIS
D371V1, survival
                  sevent
clus2               0  1
  ZNF292 MUTATED    9  1
  ZNF292 WILD-TYPE 97 13
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              10              110 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
               1               13 
$`ZNF292 MUTATED`
TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A014 TCGA-AG-A01W 
        1.02        20.94        15.91        70.03 

$`ZNF292 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y 
       23.01        17.03        13.02         1.02        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ZNF292 MUTATED ZNF292 WILD-TYPE 
            0.99             0.92 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
           70.03            72.07 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 70.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF292 MUTATED" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE"   "ZNF292 MUTATED" "ZNF292 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" "ZNF292 WILD-TYPE" 
[1] "hr=" "1.1"
D371V2, continuous
D371V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED     12    4
  ZNF292 WILD-TYPE  142   64
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  COLON              12              142
  RECTUM              4               64
D371V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF292 MUTATED     11    5
  ZNF292 WILD-TYPE   96  112
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  FEMALE             11               96
  MALE                5              112
D371V5, multiclass
                                clus
vv                               ZNF292 MUTATED ZNF292 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D371V6, multiclass
    clus
vv   ZNF292 MUTATED ZNF292 WILD-TYPE
  T1              2                7
  T2              4               43
  T3              7              143
  T4              3               14
D371V7, multiclass
    clus
vv   ZNF292 MUTATED ZNF292 WILD-TYPE
  N0             13              121
  N1              1               43
  N2              2               44
D371V8, multiclass
     clus
vv    ZNF292 MUTATED ZNF292 WILD-TYPE
  M0              16              173
  M1               0               31
  M1A              0                1
D371V9, multiclass
     clus
vv    ZNF292 MUTATED ZNF292 WILD-TYPE
  I                5               43
  II               8               74
  III              3               57
  IV               0               29

Clustering(372) Variable = PEX3 MUTATION ANALYSIS
D372V1, survival
                sevent
clus2              0   1
  PEX3 MUTATED     4   0
  PEX3 WILD-TYPE 102  14
  PEX3 MUTATED PEX3 WILD-TYPE 
             4            116 
  PEX3 MUTATED PEX3 WILD-TYPE 
             0             14 
$`PEX3 MUTATED`
TCGA-AA-3947 TCGA-AA-A01Q TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02         1.02        20.94 

$`PEX3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
       13.02        12.00        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PEX3 MUTATED PEX3 WILD-TYPE 
          0.99           0.92 
  PEX3 MUTATED PEX3 WILD-TYPE 
         20.94          72.07 
  PEX3 MUTATED PEX3 WILD-TYPE 
          1.02          11.49 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PEX3 WILD-TYPE"   "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PEX3 MUTATED" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" "PEX3 WILD-TYPE" 
[1] "hr="     "9300000"
D372V2, continuous
D372V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PEX3 MUTATED      4    3
  PEX3 WILD-TYPE  150   65
        clus
vv       PEX3 MUTATED PEX3 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D372V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PEX3 MUTATED      4    3
  PEX3 WILD-TYPE  103  114
        clus
vv       PEX3 MUTATED PEX3 WILD-TYPE
  FEMALE            4            103
  MALE              3            114
D372V5, multiclass
                                clus
vv                               PEX3 MUTATED PEX3 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D372V6, multiclass
    clus
vv   PEX3 MUTATED PEX3 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            1             16
D372V7, multiclass
    clus
vv   PEX3 MUTATED PEX3 WILD-TYPE
  N0            6            128
  N1            1             43
  N2            0             46
D372V8, multiclass
     clus
vv    PEX3 MUTATED PEX3 WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
D372V9, multiclass
     clus
vv    PEX3 MUTATED PEX3 WILD-TYPE
  I              2             46
  II             4             78
  III            1             59
  IV             0             29

Clustering(373) Variable = CACNA1E MUTATION ANALYSIS
D373V1, survival
                   sevent
clus2                0  1
  CACNA1E MUTATED    8  3
  CACNA1E WILD-TYPE 98 11
  CACNA1E MUTATED CACNA1E WILD-TYPE 
               11               109 
  CACNA1E MUTATED CACNA1E WILD-TYPE 
                3                11 
$`CACNA1E MUTATED`
TCGA-AA-3710 TCGA-AA-3854 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02         1.02         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A014 
       35.01        10.39         1.02        20.94        15.91 

$`CACNA1E WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 
       15.85        10.62        13.55        12.72         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CACNA1E MUTATED CACNA1E WILD-TYPE 
             1.02              0.92 
  CACNA1E MUTATED CACNA1E WILD-TYPE 
            35.01             72.07 
  CACNA1E MUTATED CACNA1E WILD-TYPE 
             4.01             12.00 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "CACNA1E MUTATED"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "CACNA1E MUTATED"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "CACNA1E MUTATED"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CACNA1E MUTATED" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE"   "CACNA1E MUTATED" "CACNA1E WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" "CACNA1E WILD-TYPE" 
[1] "hr=" "3.8"
D373V2, continuous
D373V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CACNA1E MUTATED     14    4
  CACNA1E WILD-TYPE  140   64
        clus
vv       CACNA1E MUTATED CACNA1E WILD-TYPE
  COLON               14               140
  RECTUM               4                64
D373V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CACNA1E MUTATED     10    8
  CACNA1E WILD-TYPE   97  109
        clus
vv       CACNA1E MUTATED CACNA1E WILD-TYPE
  FEMALE              10                97
  MALE                 8               109
D373V5, multiclass
                                clus
vv                               CACNA1E MUTATED CACNA1E WILD-TYPE
  COLON ADENOCARCINOMA                        10               118
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        4                53
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D373V6, multiclass
    clus
vv   CACNA1E MUTATED CACNA1E WILD-TYPE
  T1               1                 8
  T2               4                43
  T3               9               141
  T4               4                13
D373V7, multiclass
    clus
vv   CACNA1E MUTATED CACNA1E WILD-TYPE
  N0              13               121
  N1               3                41
  N2               2                44
D373V8, multiclass
     clus
vv    CACNA1E MUTATED CACNA1E WILD-TYPE
  M0               16               173
  M1                2                29
  M1A               0                 1
D373V9, multiclass
     clus
vv    CACNA1E MUTATED CACNA1E WILD-TYPE
  I                 5                43
  II                8                74
  III               3                57
  IV                1                28

Clustering(374) Variable = ABCA13 MUTATION ANALYSIS
D374V1, survival
                  sevent
clus2               0  1
  ABCA13 MUTATED   10  2
  ABCA13 WILD-TYPE 96 12
  ABCA13 MUTATED ABCA13 WILD-TYPE 
              12              108 
  ABCA13 MUTATED ABCA13 WILD-TYPE 
               2               12 
$`ABCA13 MUTATED`
TCGA-AA-3666 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A011 
       20.98        51.95        10.39         1.02        20.94        17.03 

$`ABCA13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 
        0.99         0.99         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       10.62        13.55        12.72         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ABCA13 MUTATED ABCA13 WILD-TYPE 
            0.99             0.92 
  ABCA13 MUTATED ABCA13 WILD-TYPE 
           51.95            72.07 
  ABCA13 MUTATED ABCA13 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 52.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE"   "ABCA13 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ABCA13 WILD-TYPE"   "ABCA13 MUTATED" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" "ABCA13 WILD-TYPE" 
[1] "hr=" "1.8"
D374V2, continuous
D374V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA13 MUTATED     15    4
  ABCA13 WILD-TYPE  139   64
        clus
vv       ABCA13 MUTATED ABCA13 WILD-TYPE
  COLON              15              139
  RECTUM              4               64
D374V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA13 MUTATED     10    9
  ABCA13 WILD-TYPE   97  108
        clus
vv       ABCA13 MUTATED ABCA13 WILD-TYPE
  FEMALE             10               97
  MALE                9              108
D374V5, multiclass
                                clus
vv                               ABCA13 MUTATED ABCA13 WILD-TYPE
  COLON ADENOCARCINOMA                       12              116
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D374V6, multiclass
    clus
vv   ABCA13 MUTATED ABCA13 WILD-TYPE
  T1              1                8
  T2              3               44
  T3             13              137
  T4              2               15
D374V7, multiclass
    clus
vv   ABCA13 MUTATED ABCA13 WILD-TYPE
  N0             13              121
  N1              6               38
  N2              0               46
D374V8, multiclass
     clus
vv    ABCA13 MUTATED ABCA13 WILD-TYPE
  M0              15              174
  M1               3               28
  M1A              0                1
D374V9, multiclass
     clus
vv    ABCA13 MUTATED ABCA13 WILD-TYPE
  I                3               45
  II               9               73
  III              3               57
  IV               2               27

Clustering(375) Variable = NGB MUTATION ANALYSIS
D375V1, survival
               sevent
clus2             0   1
  NGB MUTATED     1   0
  NGB WILD-TYPE 105  14
  NGB MUTATED NGB WILD-TYPE 
            1           119 
  NGB MUTATED NGB WILD-TYPE 
            0            14 
$`NGB MUTATED`
TCGA-AA-A01D 
        0.99 

$`NGB WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  NGB MUTATED NGB WILD-TYPE 
         0.99          0.92 
  NGB MUTATED NGB WILD-TYPE 
         0.99         72.07 
  NGB MUTATED NGB WILD-TYPE 
         0.99         10.98 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE"   "NGB MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE"   "NGB MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE"   "NGB MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
[1] "Remove cluster labels:" "NGB MUTATED"           
clus
  NGB MUTATED NGB WILD-TYPE 
            1           119 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01F 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P    TCGA-AA-A01Q 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V    TCGA-AA-A01X 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F    TCGA-AA-A02H 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y    TCGA-AA-A03F 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689    TCGA-AF-2691 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581    TCGA-AG-3582 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726    TCGA-AG-3727 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893    TCGA-AG-3894 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008    TCGA-AG-A002 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y    TCGA-AG-A011 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L    TCGA-AG-A01W 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026    TCGA-AG-A02G 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
   TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" "NGB WILD-TYPE" 
D375V2, continuous
D375V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  NGB MUTATED      2    1
  NGB WILD-TYPE  152   67
        clus
vv       NGB MUTATED NGB WILD-TYPE
  COLON            2           152
  RECTUM           1            67
D375V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  NGB MUTATED      2    1
  NGB WILD-TYPE  105  116
        clus
vv       NGB MUTATED NGB WILD-TYPE
  FEMALE           2           105
  MALE             1           116
D375V5, multiclass
                                clus
vv                               NGB MUTATED NGB WILD-TYPE
  COLON ADENOCARCINOMA                     1           127
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D375V6, multiclass
    clus
vv   NGB MUTATED NGB WILD-TYPE
  T1           1             8
  T2           1            46
  T3           1           149
  T4           0            17
D375V7, multiclass
    clus
vv   NGB MUTATED NGB WILD-TYPE
  N0           2           132
  N1           0            44
  N2           1            45
D375V8, multiclass
     clus
vv    NGB MUTATED NGB WILD-TYPE
  M0            3           186
  M1            0            31
  M1A           0             1
D375V9, multiclass
     clus
vv    NGB MUTATED NGB WILD-TYPE
  I             2            46
  II            0            82
  III           1            59
  IV            0            29

Clustering(376) Variable = MAP3K4 MUTATION ANALYSIS
D376V1, survival
                  sevent
clus2               0  1
  MAP3K4 MUTATED   10  1
  MAP3K4 WILD-TYPE 96 13
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
              11              109 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
               1               13 
$`MAP3K4 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00K 
       14.70         0.99         0.99         1.02        18.02        18.02 
TCGA-AA-A01P TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-4001 TCGA-AG-A02N 
       38.07        35.01         1.02         1.02        61.94 

$`MAP3K4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
            0.99             0.92 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
           61.94            72.07 
  MAP3K4 MUTATED MAP3K4 WILD-TYPE 
           14.70            10.92 
[1] "1.0 - 61.9 (14.7)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED"   "MAP3K4 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP3K4 WILD-TYPE"   "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "MAP3K4 MUTATED" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" "MAP3K4 WILD-TYPE" 
[1] "hr=" "1.4"
D376V2, continuous
D376V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K4 MUTATED     14    3
  MAP3K4 WILD-TYPE  140   65
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  COLON              14              140
  RECTUM              3               65
D376V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP3K4 MUTATED     10    7
  MAP3K4 WILD-TYPE   97  110
        clus
vv       MAP3K4 MUTATED MAP3K4 WILD-TYPE
  FEMALE             10               97
  MALE                7              110
D376V5, multiclass
                                clus
vv                               MAP3K4 MUTATED MAP3K4 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D376V6, multiclass
    clus
vv   MAP3K4 MUTATED MAP3K4 WILD-TYPE
  T1              1                8
  T2              2               45
  T3             10              140
  T4              3               14
D376V7, multiclass
    clus
vv   MAP3K4 MUTATED MAP3K4 WILD-TYPE
  N0             12              122
  N1              2               42
  N2              3               43
D376V8, multiclass
     clus
vv    MAP3K4 MUTATED MAP3K4 WILD-TYPE
  M0              16              173
  M1               0               31
  M1A              0                1
D376V9, multiclass
     clus
vv    MAP3K4 MUTATED MAP3K4 WILD-TYPE
  I                2               46
  II               9               73
  III              5               55
  IV               0               29

Clustering(377) Variable = PDZRN4 MUTATION ANALYSIS
D377V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    7  1
  PDZRN4 WILD-TYPE 99 13
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8              112 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               1               13 
$`PDZRN4 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00A TCGA-AA-A00N 
       16.54         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A010 TCGA-AG-A002 
       20.98        20.94 

$`PDZRN4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.99             0.92 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           20.98            72.07 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
          10.275           10.950 
[1] "1.0 - 21.0 (10.3)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D377V2, continuous
D377V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED     12    1
  PDZRN4 WILD-TYPE  142   67
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON              12              142
  RECTUM              1               67
D377V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      8    5
  PDZRN4 WILD-TYPE   99  112
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              8               99
  MALE                5              112
D377V5, multiclass
                                clus
vv                               PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D377V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              7              143
  T4              3               14
D377V7, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              9              125
  N1              3               41
  N2              1               45
D377V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              12              177
  M1               1               30
  M1A              0                1
D377V9, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                3               45
  II               6               76
  III              3               57
  IV               1               28

Clustering(378) Variable = CTNNA2 MUTATION ANALYSIS
D378V1, survival
                  sevent
clus2                0   1
  CTNNA2 MUTATED     4   0
  CTNNA2 WILD-TYPE 102  14
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
               4              116 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
               0               14 
$`CTNNA2 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-3977 TCGA-AG-3892 
        0.99         1.02         1.02         1.02 

$`CTNNA2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            0.99             0.92 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            1.02            72.07 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
[1] "hr="     "9400000"
D378V2, continuous
D378V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      9    2
  CTNNA2 WILD-TYPE  145   66
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D378V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      8    3
  CTNNA2 WILD-TYPE   99  114
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  FEMALE              8               99
  MALE                3              114
D378V5, multiclass
                                clus
vv                               CTNNA2 MUTATED CTNNA2 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D378V6, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              9              141
  T4              0               17
D378V7, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              3               43
D378V8, multiclass
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  M0               8              181
  M1               2               29
  M1A              0                1
D378V9, multiclass
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  I                1               47
  II               5               77
  III              2               58
  IV               2               27

Clustering(379) Variable = ZNF521 MUTATION ANALYSIS
D379V1, survival
                  sevent
clus2                0   1
  ZNF521 MUTATED     4   1
  ZNF521 WILD-TYPE 102  13
  ZNF521 MUTATED ZNF521 WILD-TYPE 
               5              115 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
               1               13 
$`ZNF521 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-A002 TCGA-AG-A026 
        1.02        20.98        35.01        20.94         1.94 

$`ZNF521 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZNF521 MUTATED ZNF521 WILD-TYPE 
            1.02             0.92 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
           35.01            72.07 
  ZNF521 MUTATED ZNF521 WILD-TYPE 
           20.94            10.92 
[1] "1.0 - 35.0 (20.9)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF521 MUTATED" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE"   "ZNF521 MUTATED" "ZNF521 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" "ZNF521 WILD-TYPE" 
[1] "hr=" "1.8"
D379V2, continuous
D379V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF521 MUTATED      9    4
  ZNF521 WILD-TYPE  145   64
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  COLON               9              145
  RECTUM              4               64
D379V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF521 MUTATED      5    8
  ZNF521 WILD-TYPE  102  109
        clus
vv       ZNF521 MUTATED ZNF521 WILD-TYPE
  FEMALE              5              102
  MALE                8              109
D379V5, multiclass
                                clus
vv                               ZNF521 MUTATED ZNF521 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
D379V6, multiclass
    clus
vv   ZNF521 MUTATED ZNF521 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              8              142
  T4              2               15
D379V7, multiclass
    clus
vv   ZNF521 MUTATED ZNF521 WILD-TYPE
  N0              6              128
  N1              5               39
  N2              2               44
D379V8, multiclass
     clus
vv    ZNF521 MUTATED ZNF521 WILD-TYPE
  M0              12              177
  M1               0               31
  M1A              0                1
D379V9, multiclass
     clus
vv    ZNF521 MUTATED ZNF521 WILD-TYPE
  I                1               47
  II               4               78
  III              7               53
  IV               0               29

Clustering(380) Variable = C20ORF160 MUTATION ANALYSIS
D380V1, survival
                     sevent
clus2                   0   1
  C20ORF160 MUTATED     4   1
  C20ORF160 WILD-TYPE 102  13
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  5                 115 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  1                  13 
$`C20ORF160 MUTATED`
TCGA-A6-2674 TCGA-AA-3710 TCGA-AA-A00N TCGA-AA-A01R TCGA-AG-3999 
       17.19         1.02         4.01        35.01         1.02 

$`C20ORF160 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
               1.02                0.92 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
              35.01               72.07 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
               4.01               10.98 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 72.1 (11.0)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"C20ORF160 WILD-TYPE"   "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
  "C20ORF160 MUTATED" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" "C20ORF160 WILD-TYPE" 
[1] "hr=" "2.3"
D380V2, continuous
D380V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C20ORF160 MUTATED      5    1
  C20ORF160 WILD-TYPE  149   67
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  COLON                  5                 149
  RECTUM                 1                  67
D380V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C20ORF160 MUTATED      2    4
  C20ORF160 WILD-TYPE  105  113
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  FEMALE                 2                 105
  MALE                   4                 113
D380V5, multiclass
                                clus
vv                               C20ORF160 MUTATED C20ORF160 WILD-TYPE
  COLON ADENOCARCINOMA                           2                 126
  COLON MUCINOUS ADENOCARCINOMA                  3                  21
  RECTAL ADENOCARCINOMA                          1                  56
  RECTAL MUCINOUS ADENOCARCINOMA                 0                   8
D380V6, multiclass
    clus
vv   C20ORF160 MUTATED C20ORF160 WILD-TYPE
  T1                 0                   9
  T2                 1                  46
  T3                 4                 146
  T4                 1                  16
D380V7, multiclass
    clus
vv   C20ORF160 MUTATED C20ORF160 WILD-TYPE
  N0                 3                 131
  N1                 0                  44
  N2                 3                  43
D380V8, multiclass
     clus
vv    C20ORF160 MUTATED C20ORF160 WILD-TYPE
  M0                  5                 184
  M1                  1                  30
  M1A                 0                   1
D380V9, multiclass
     clus
vv    C20ORF160 MUTATED C20ORF160 WILD-TYPE
  I                   1                  47
  II                  2                  80
  III                 2                  58
  IV                  0                  29

Clustering(381) Variable = CHST10 MUTATION ANALYSIS
D381V1, survival
                  sevent
clus2                0   1
  CHST10 MUTATED     5   1
  CHST10 WILD-TYPE 101  13
  CHST10 MUTATED CHST10 WILD-TYPE 
               6              114 
  CHST10 MUTATED CHST10 WILD-TYPE 
               1               13 
$`CHST10 MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A01P TCGA-AA-A01T TCGA-AG-A002 
        1.02         0.99         1.02        38.07        33.04        20.94 

$`CHST10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CHST10 MUTATED CHST10 WILD-TYPE 
            0.99             0.92 
  CHST10 MUTATED CHST10 WILD-TYPE 
           38.07            72.07 
  CHST10 MUTATED CHST10 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 38.1 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHST10 MUTATED" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHST10 MUTATED" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHST10 MUTATED" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
[1] "hr=" "1.6"
D381V2, continuous
D381V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHST10 MUTATED      7    1
  CHST10 WILD-TYPE  147   67
        clus
vv       CHST10 MUTATED CHST10 WILD-TYPE
  COLON               7              147
  RECTUM              1               67
D381V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHST10 MUTATED      5    3
  CHST10 WILD-TYPE  102  114
        clus
vv       CHST10 MUTATED CHST10 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
D381V5, multiclass
                                clus
vv                               CHST10 MUTATED CHST10 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D381V6, multiclass
    clus
vv   CHST10 MUTATED CHST10 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              5              145
  T4              0               17
D381V7, multiclass
    clus
vv   CHST10 MUTATED CHST10 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              0               46
D381V8, multiclass
     clus
vv    CHST10 MUTATED CHST10 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
D381V9, multiclass
     clus
vv    CHST10 MUTATED CHST10 WILD-TYPE
  I                2               46
  II               3               79
  III              2               58
  IV               0               29

Clustering(382) Variable = CLEC4C MUTATION ANALYSIS
D382V1, survival
                  sevent
clus2                0   1
  CLEC4C MUTATED     2   1
  CLEC4C WILD-TYPE 104  13
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               3              117 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               1               13 
$`CLEC4C MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-4001 
        4.01        20.98         1.02 

$`CLEC4C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CLEC4C MUTATED CLEC4C WILD-TYPE 
            1.02             0.92 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
           20.98            72.07 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
[1] "hr=" "3.7"
D382V2, continuous
D382V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4C MUTATED      4    1
  CLEC4C WILD-TYPE  150   67
        clus
vv       CLEC4C MUTATED CLEC4C WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D382V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4C MUTATED      3    2
  CLEC4C WILD-TYPE  104  115
        clus
vv       CLEC4C MUTATED CLEC4C WILD-TYPE
  FEMALE              3              104
  MALE                2              115
D382V5, multiclass
                                clus
vv                               CLEC4C MUTATED CLEC4C WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D382V6, multiclass
    clus
vv   CLEC4C MUTATED CLEC4C WILD-TYPE
  T1              0                9
  T2              0               47
  T3              2              148
  T4              3               14
D382V7, multiclass
    clus
vv   CLEC4C MUTATED CLEC4C WILD-TYPE
  N0              4              130
  N1              0               44
  N2              1               45
D382V8, multiclass
     clus
vv    CLEC4C MUTATED CLEC4C WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
D382V9, multiclass
     clus
vv    CLEC4C MUTATED CLEC4C WILD-TYPE
  I                0               48
  II               4               78
  III              0               60
  IV               1               28

Clustering(383) Variable = OR10S1 MUTATION ANALYSIS
D383V1, survival
                  sevent
clus2                0   1
  OR10S1 MUTATED     4   0
  OR10S1 WILD-TYPE 102  14
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               4              116 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               0               14 
$`OR10S1 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A010 TCGA-AG-A002 
        1.02         0.99        20.98        20.94 

$`OR10S1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR10S1 MUTATED OR10S1 WILD-TYPE 
            0.99             0.92 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
           20.98            72.07 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D383V2, continuous
D383V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10S1 MUTATED      6    1
  OR10S1 WILD-TYPE  148   67
        clus
vv       OR10S1 MUTATED OR10S1 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D383V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10S1 MUTATED      3    4
  OR10S1 WILD-TYPE  104  113
        clus
vv       OR10S1 MUTATED OR10S1 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D383V5, multiclass
                                clus
vv                               OR10S1 MUTATED OR10S1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D383V6, multiclass
    clus
vv   OR10S1 MUTATED OR10S1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              1               16
D383V7, multiclass
    clus
vv   OR10S1 MUTATED OR10S1 WILD-TYPE
  N0              6              128
  N1              0               44
  N2              1               45
D383V8, multiclass
     clus
vv    OR10S1 MUTATED OR10S1 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
D383V9, multiclass
     clus
vv    OR10S1 MUTATED OR10S1 WILD-TYPE
  I                2               46
  II               4               78
  III              0               60
  IV               1               28

Clustering(384) Variable = OR6K3 MUTATION ANALYSIS
D384V1, survival
                 sevent
clus2               0   1
  OR6K3 MUTATED     4   0
  OR6K3 WILD-TYPE 102  14
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              4             116 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              0              14 
$`OR6K3 MUTATED`
TCGA-AA-A010 TCGA-AA-A01X TCGA-AA-A02O TCGA-AG-3599 
       20.98        26.01         0.92         0.99 

$`OR6K3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        35.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR6K3 MUTATED OR6K3 WILD-TYPE 
           0.92            0.92 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
          26.01           72.07 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
         10.985          10.950 
[1] "0.9 - 26.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D384V2, continuous
D384V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      4    1
  OR6K3 WILD-TYPE  150   67
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  COLON              4             150
  RECTUM             1              67
D384V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      3    2
  OR6K3 WILD-TYPE  104  115
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  FEMALE             3             104
  MALE               2             115
D384V5, multiclass
                                clus
vv                               OR6K3 MUTATED OR6K3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D384V6, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             1             149
  T4             2              15
D384V7, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             0              46
D384V8, multiclass
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
D384V9, multiclass
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  I               1              47
  II              3              79
  III             1              59
  IV              0              29

Clustering(385) Variable = TRPA1 MUTATION ANALYSIS
D385V1, survival
                 sevent
clus2              0  1
  TRPA1 MUTATED    8  0
  TRPA1 WILD-TYPE 98 14
  TRPA1 MUTATED TRPA1 WILD-TYPE 
              8             112 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
              0              14 
$`TRPA1 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AG-3599 
        1.02        20.98         1.02        35.01         0.92         0.99 
TCGA-AG-3999 TCGA-AG-A002 
        1.02        20.94 

$`TRPA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        38.07         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TRPA1 MUTATED TRPA1 WILD-TYPE 
           0.92            0.92 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
          35.01           72.07 
  TRPA1 MUTATED TRPA1 WILD-TYPE 
           1.02           11.49 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE"   "TRPA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "TRPA1 MUTATED"   "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPA1 MUTATED" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" "TRPA1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D385V2, continuous
D385V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPA1 MUTATED      7    4
  TRPA1 WILD-TYPE  147   64
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  COLON              7             147
  RECTUM             4              64
D385V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPA1 MUTATED      4    7
  TRPA1 WILD-TYPE  103  110
        clus
vv       TRPA1 MUTATED TRPA1 WILD-TYPE
  FEMALE             4             103
  MALE               7             110
D385V5, multiclass
                                clus
vv                               TRPA1 MUTATED TRPA1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D385V6, multiclass
    clus
vv   TRPA1 MUTATED TRPA1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             6             144
  T4             1              16
D385V7, multiclass
    clus
vv   TRPA1 MUTATED TRPA1 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             4              42
D385V8, multiclass
     clus
vv    TRPA1 MUTATED TRPA1 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
D385V9, multiclass
     clus
vv    TRPA1 MUTATED TRPA1 WILD-TYPE
  I               2              46
  II              3              79
  III             5              55
  IV              0              29

Clustering(386) Variable = OR4C11 MUTATION ANALYSIS
D386V1, survival
                  sevent
clus2                0   1
  OR4C11 MUTATED     1   1
  OR4C11 WILD-TYPE 105  13
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               2              118 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               1               13 
$`OR4C11 MUTATED`
TCGA-AA-A004 TCGA-AF-3913 
       13.94        10.39 

$`OR4C11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
        0.99        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 
       15.85        10.62        13.55        12.72         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  OR4C11 MUTATED OR4C11 WILD-TYPE 
           10.39             0.92 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
           13.94            72.07 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
          12.165           10.950 
[1] "10.4 - 13.9 (12.2)" "0.9 - 72.1 (10.9)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
[1] "Remove cluster labels:" "OR4C11 MUTATED"        
clus
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AG-3581       TCGA-AG-3582 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
D386V2, continuous
D386V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      2    2
  OR4C11 WILD-TYPE  152   66
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  COLON               2              152
  RECTUM              2               66
D386V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      2    2
  OR4C11 WILD-TYPE  105  115
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  FEMALE              2              105
  MALE                2              115
D386V5, multiclass
                                clus
vv                               OR4C11 MUTATED OR4C11 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D386V6, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              4              146
  T4              0               17
D386V7, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  N0              1              133
  N1              3               41
  N2              0               46
D386V8, multiclass
     clus
vv    OR4C11 MUTATED OR4C11 WILD-TYPE
  M0               3              186
  M1               1               30
  M1A              0                1
D386V9, multiclass
     clus
vv    OR4C11 MUTATED OR4C11 WILD-TYPE
  I                0               48
  II               1               81
  III              2               58
  IV               0               29

Clustering(387) Variable = ASTN1 MUTATION ANALYSIS
D387V1, survival
                 sevent
clus2              0  1
  ASTN1 MUTATED    8  2
  ASTN1 WILD-TYPE 98 12
  ASTN1 MUTATED ASTN1 WILD-TYPE 
             10             110 
  ASTN1 MUTATED ASTN1 WILD-TYPE 
              2              12 
$`ASTN1 MUTATED`
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A00R 
        0.99         1.02         1.02        30.02        17.00         0.99 
TCGA-AA-A010 TCGA-AA-A02H TCGA-AG-3892 TCGA-AG-A00H 
       20.98         2.01         1.02        25.94 

$`ASTN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O 
       19.00        34.03        18.02        18.02         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
       27.02        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95        39.95         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 
        1.02        20.94        13.91         6.02        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ASTN1 MUTATED ASTN1 WILD-TYPE 
           0.99            0.92 
  ASTN1 MUTATED ASTN1 WILD-TYPE 
          30.02           72.07 
  ASTN1 MUTATED ASTN1 WILD-TYPE 
          1.515          11.490 
[1] "1.0 - 30.0 (1.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ASTN1 WILD-TYPE"   "ASTN1 MUTATED" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE"   "ASTN1 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" "ASTN1 WILD-TYPE" 
[1] "hr=" "2.7"
D387V2, continuous
D387V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN1 MUTATED     12    3
  ASTN1 WILD-TYPE  142   65
        clus
vv       ASTN1 MUTATED ASTN1 WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D387V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN1 MUTATED      8    7
  ASTN1 WILD-TYPE   99  110
        clus
vv       ASTN1 MUTATED ASTN1 WILD-TYPE
  FEMALE             8              99
  MALE               7             110
D387V5, multiclass
                                clus
vv                               ASTN1 MUTATED ASTN1 WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D387V6, multiclass
    clus
vv   ASTN1 MUTATED ASTN1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            11             139
  T4             1              16
D387V7, multiclass
    clus
vv   ASTN1 MUTATED ASTN1 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             3              43
D387V8, multiclass
     clus
vv    ASTN1 MUTATED ASTN1 WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
D387V9, multiclass
     clus
vv    ASTN1 MUTATED ASTN1 WILD-TYPE
  I               2              46
  II              7              75
  III             4              56
  IV              1              28

Clustering(388) Variable = AMOTL1 MUTATION ANALYSIS
D388V1, survival
                  sevent
clus2                0   1
  AMOTL1 MUTATED     6   1
  AMOTL1 WILD-TYPE 100  13
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
               7              113 
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
               1               13 
$`AMOTL1 MUTATED`
TCGA-AA-3679 TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-4001 
        0.99         0.99         1.02         4.01        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`AMOTL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
            0.99             0.92 
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
           20.98            72.07 
  AMOTL1 MUTATED AMOTL1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"AMOTL1 WILD-TYPE"   "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "AMOTL1 MUTATED" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" "AMOTL1 WILD-TYPE" 
[1] "hr=" "2"  
D388V2, continuous
D388V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AMOTL1 MUTATED      8    2
  AMOTL1 WILD-TYPE  146   66
        clus
vv       AMOTL1 MUTATED AMOTL1 WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D388V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  AMOTL1 MUTATED      5    5
  AMOTL1 WILD-TYPE  102  112
        clus
vv       AMOTL1 MUTATED AMOTL1 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
D388V5, multiclass
                                clus
vv                               AMOTL1 MUTATED AMOTL1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D388V6, multiclass
    clus
vv   AMOTL1 MUTATED AMOTL1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              6              144
  T4              2               15
D388V7, multiclass
    clus
vv   AMOTL1 MUTATED AMOTL1 WILD-TYPE
  N0              7              127
  N1              1               43
  N2              2               44
D388V8, multiclass
     clus
vv    AMOTL1 MUTATED AMOTL1 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
D388V9, multiclass
     clus
vv    AMOTL1 MUTATED AMOTL1 WILD-TYPE
  I                2               46
  II               5               77
  III              2               58
  IV               1               28

Clustering(389) Variable = DKK2 MUTATION ANALYSIS
D389V1, survival
                sevent
clus2              0   1
  DKK2 MUTATED     3   0
  DKK2 WILD-TYPE 103  14
  DKK2 MUTATED DKK2 WILD-TYPE 
             3            117 
  DKK2 MUTATED DKK2 WILD-TYPE 
             0             14 
$`DKK2 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 TCGA-AG-3582 
       14.70         0.99         1.02 

$`DKK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 
       10.62        13.55        12.72        10.39         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DKK2 MUTATED DKK2 WILD-TYPE 
          0.99           0.92 
  DKK2 MUTATED DKK2 WILD-TYPE 
         14.70          72.07 
  DKK2 MUTATED DKK2 WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 14.7 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
[1] "hr="     "9200000"
D389V2, continuous
D389V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      5    1
  DKK2 WILD-TYPE  149   67
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D389V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      3    3
  DKK2 WILD-TYPE  104  114
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  FEMALE            3            104
  MALE              3            114
D389V5, multiclass
                                clus
vv                               DKK2 MUTATED DKK2 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D389V6, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            5            145
  T4            0             17
D389V7, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  N0            3            131
  N1            3             41
  N2            0             46
D389V8, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D389V9, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  I              0             48
  II             3             79
  III            2             58
  IV             1             28

Clustering(390) Variable = OR52N1 MUTATION ANALYSIS
D390V1, survival
                  sevent
clus2                0   1
  OR52N1 MUTATED     3   2
  OR52N1 WILD-TYPE 103  12
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               5              115 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               2               12 
$`OR52N1 MUTATED`
TCGA-A6-2676 TCGA-AA-3666 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       14.70         1.02         1.02         4.01        20.98 

$`OR52N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR52N1 MUTATED OR52N1 WILD-TYPE 
            1.02             0.92 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
           20.98            72.07 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
[1] "hr=" "5.5"
D390V2, continuous
D390V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      6    0
  OR52N1 WILD-TYPE  148   68
        clus
vv       OR52N1 MUTATED OR52N1 WILD-TYPE
  COLON               6              148
  RECTUM              0               68
D390V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      3    3
  OR52N1 WILD-TYPE  104  114
        clus
vv       OR52N1 MUTATED OR52N1 WILD-TYPE
  FEMALE              3              104
  MALE                3              114
D390V5, multiclass
                                clus
vv                               OR52N1 MUTATED OR52N1 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D390V6, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              2               15
D390V7, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D390V8, multiclass
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D390V9, multiclass
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  I                0               48
  II               5               77
  III              1               59
  IV               0               29

Clustering(391) Variable = ZNF536 MUTATION ANALYSIS
D391V1, survival
                  sevent
clus2               0  1
  ZNF536 MUTATED    7  0
  ZNF536 WILD-TYPE 99 14
  ZNF536 MUTATED ZNF536 WILD-TYPE 
               7              113 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
               0               14 
$`ZNF536 MUTATED`
TCGA-AA-3715 TCGA-AA-3854 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A01G 
        0.99         1.02         1.02        30.02        18.02        12.00 
TCGA-AG-A02N 
       61.94 

$`ZNF536 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  ZNF536 MUTATED ZNF536 WILD-TYPE 
            0.99             0.92 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
           61.94            72.07 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
           12.00            10.92 
[1] "1.0 - 61.9 (12.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D391V2, continuous
D391V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF536 MUTATED     13    1
  ZNF536 WILD-TYPE  141   67
        clus
vv       ZNF536 MUTATED ZNF536 WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D391V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF536 MUTATED      5    9
  ZNF536 WILD-TYPE  102  108
        clus
vv       ZNF536 MUTATED ZNF536 WILD-TYPE
  FEMALE              5              102
  MALE                9              108
D391V5, multiclass
                                clus
vv                               ZNF536 MUTATED ZNF536 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D391V6, multiclass
    clus
vv   ZNF536 MUTATED ZNF536 WILD-TYPE
  T1              0                9
  T2              3               44
  T3             11              139
  T4              0               17
D391V7, multiclass
    clus
vv   ZNF536 MUTATED ZNF536 WILD-TYPE
  N0             13              121
  N1              1               43
  N2              0               46
D391V8, multiclass
     clus
vv    ZNF536 MUTATED ZNF536 WILD-TYPE
  M0              14              175
  M1               0               31
  M1A              0                1
D391V9, multiclass
     clus
vv    ZNF536 MUTATED ZNF536 WILD-TYPE
  I                3               45
  II              10               72
  III              1               59
  IV               0               29

Clustering(392) Variable = C6ORF97 MUTATION ANALYSIS
D392V1, survival
                   sevent
clus2                 0   1
  C6ORF97 MUTATED     5   1
  C6ORF97 WILD-TYPE 101  13
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                6               114 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                1                13 
$`C6ORF97 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00N TCGA-AG-A002 TCGA-AG-A02X 
        0.99         0.99         1.02         4.01        20.94        40.96 

$`C6ORF97 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        61.94        38.01        72.07 

  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
             0.99              0.92 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
            40.96             72.07 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
[1] "hr=" "1.4"
D392V2, continuous
D392V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C6ORF97 MUTATED      6    3
  C6ORF97 WILD-TYPE  148   65
        clus
vv       C6ORF97 MUTATED C6ORF97 WILD-TYPE
  COLON                6               148
  RECTUM               3                65
D392V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C6ORF97 MUTATED      4    5
  C6ORF97 WILD-TYPE  103  112
        clus
vv       C6ORF97 MUTATED C6ORF97 WILD-TYPE
  FEMALE               4               103
  MALE                 5               112
D392V5, multiclass
                                clus
vv                               C6ORF97 MUTATED C6ORF97 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D392V6, multiclass
    clus
vv   C6ORF97 MUTATED C6ORF97 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               2                15
D392V7, multiclass
    clus
vv   C6ORF97 MUTATED C6ORF97 WILD-TYPE
  N0               9               125
  N1               0                44
  N2               0                46
D392V8, multiclass
     clus
vv    C6ORF97 MUTATED C6ORF97 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
D392V9, multiclass
     clus
vv    C6ORF97 MUTATED C6ORF97 WILD-TYPE
  I                 3                45
  II                6                76
  III               0                60
  IV                0                29

Clustering(393) Variable = NBEA MUTATION ANALYSIS
D393V1, survival
                sevent
clus2             0  1
  NBEA MUTATED    8  2
  NBEA WILD-TYPE 98 12
  NBEA MUTATED NBEA WILD-TYPE 
            10            110 
  NBEA MUTATED NBEA WILD-TYPE 
             2             12 
$`NBEA MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A017 TCGA-AY-4070 
        0.99         1.02         4.01        20.98        15.02        16.31 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00H 
        0.99         1.02        20.94        25.94 

$`NBEA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02        13.91         6.02        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NBEA MUTATED NBEA WILD-TYPE 
          0.99           0.92 
  NBEA MUTATED NBEA WILD-TYPE 
         25.94          72.07 
  NBEA MUTATED NBEA WILD-TYPE 
         9.515         10.950 
[1] "1.0 - 25.9 (9.5)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NBEA MUTATED"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NBEA MUTATED"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NBEA MUTATED"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NBEA WILD-TYPE"   "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "NBEA MUTATED" "NBEA WILD-TYPE" "NBEA WILD-TYPE"   "NBEA MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" "NBEA WILD-TYPE" 
[1] "hr=" "2.4"
D393V2, continuous
D393V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NBEA MUTATED     10    4
  NBEA WILD-TYPE  144   64
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  COLON            10            144
  RECTUM            4             64
D393V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NBEA MUTATED      6    8
  NBEA WILD-TYPE  101  109
        clus
vv       NBEA MUTATED NBEA WILD-TYPE
  FEMALE            6            101
  MALE              8            109
D393V5, multiclass
                                clus
vv                               NBEA MUTATED NBEA WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D393V6, multiclass
    clus
vv   NBEA MUTATED NBEA WILD-TYPE
  T1            1              8
  T2            3             44
  T3            8            142
  T4            2             15
D393V7, multiclass
    clus
vv   NBEA MUTATED NBEA WILD-TYPE
  N0            9            125
  N1            4             40
  N2            1             45
D393V8, multiclass
     clus
vv    NBEA MUTATED NBEA WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
D393V9, multiclass
     clus
vv    NBEA MUTATED NBEA WILD-TYPE
  I              3             45
  II             5             77
  III            4             56
  IV             1             28

Clustering(394) Variable = TRIM44 MUTATION ANALYSIS
D394V1, survival
                  sevent
clus2                0   1
  TRIM44 MUTATED     5   1
  TRIM44 WILD-TYPE 101  13
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               6              114 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
               1               13 
$`TRIM44 MUTATED`
TCGA-A6-2676 TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-A00J TCGA-AA-A024 TCGA-AG-3892 
       14.70        15.52         0.99        18.02        39.06         1.02 

$`TRIM44 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TRIM44 MUTATED TRIM44 WILD-TYPE 
            0.99             0.92 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
           39.06            72.07 
  TRIM44 MUTATED TRIM44 WILD-TYPE 
           15.11            10.77 
[1] "1.0 - 39.1 (15.1)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE"   "TRIM44 MUTATED" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TRIM44 WILD-TYPE"   "TRIM44 MUTATED" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" "TRIM44 WILD-TYPE" 
[1] "hr=" "1.2"
D394V2, continuous
D394V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      5    1
  TRIM44 WILD-TYPE  149   67
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D394V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM44 MUTATED      4    2
  TRIM44 WILD-TYPE  103  115
        clus
vv       TRIM44 MUTATED TRIM44 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
D394V5, multiclass
                                clus
vv                               TRIM44 MUTATED TRIM44 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D394V6, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              2              148
  T4              2               15
D394V7, multiclass
    clus
vv   TRIM44 MUTATED TRIM44 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
D394V8, multiclass
     clus
vv    TRIM44 MUTATED TRIM44 WILD-TYPE
  M0               5              184
  M1               1               30
  M1A              0                1
D394V9, multiclass
     clus
vv    TRIM44 MUTATED TRIM44 WILD-TYPE
  I                1               47
  II               3               79
  III              1               59
  IV               1               28

Clustering(395) Variable = ZNF667 MUTATION ANALYSIS
D395V1, survival
                  sevent
clus2                0   1
  ZNF667 MUTATED     6   0
  ZNF667 WILD-TYPE 100  14
  ZNF667 MUTATED ZNF667 WILD-TYPE 
               6              114 
  ZNF667 MUTATED ZNF667 WILD-TYPE 
               0               14 
$`ZNF667 MUTATED`
TCGA-AA-3555 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3587 TCGA-AG-A002 
        0.99         1.02        20.98        35.01         1.02        20.94 

$`ZNF667 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 
       12.72        10.39         1.02         1.02         2.01         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF667 MUTATED ZNF667 WILD-TYPE 
            0.99             0.92 
  ZNF667 MUTATED ZNF667 WILD-TYPE 
           35.01            72.07 
  ZNF667 MUTATED ZNF667 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 35.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE"   "ZNF667 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE"   "ZNF667 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF667 WILD-TYPE"   "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE"   "ZNF667 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF667 MUTATED" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" "ZNF667 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D395V2, continuous
D395V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF667 MUTATED      6    3
  ZNF667 WILD-TYPE  148   65
        clus
vv       ZNF667 MUTATED ZNF667 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D395V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF667 MUTATED      6    3
  ZNF667 WILD-TYPE  101  114
        clus
vv       ZNF667 MUTATED ZNF667 WILD-TYPE
  FEMALE              6              101
  MALE                3              114
D395V5, multiclass
                                clus
vv                               ZNF667 MUTATED ZNF667 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D395V6, multiclass
    clus
vv   ZNF667 MUTATED ZNF667 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              6              144
  T4              1               16
D395V7, multiclass
    clus
vv   ZNF667 MUTATED ZNF667 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              2               44
D395V8, multiclass
     clus
vv    ZNF667 MUTATED ZNF667 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
D395V9, multiclass
     clus
vv    ZNF667 MUTATED ZNF667 WILD-TYPE
  I                2               46
  II               4               78
  III              3               57
  IV               0               29

Clustering(396) Variable = HKR1 MUTATION ANALYSIS
D396V1, survival
                sevent
clus2              0   1
  HKR1 MUTATED     4   0
  HKR1 WILD-TYPE 102  14
  HKR1 MUTATED HKR1 WILD-TYPE 
             4            116 
  HKR1 MUTATED HKR1 WILD-TYPE 
             0             14 
$`HKR1 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-A010 TCGA-AG-A002 
        0.99         0.99        20.98        20.94 

$`HKR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  HKR1 MUTATED HKR1 WILD-TYPE 
          0.99           0.92 
  HKR1 MUTATED HKR1 WILD-TYPE 
         20.98          72.07 
  HKR1 MUTATED HKR1 WILD-TYPE 
        10.965         10.950 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" "HKR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" "HKR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" "HKR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE"   "HKR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HKR1 MUTATED" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" "HKR1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D396V2, continuous
D396V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HKR1 MUTATED      6    2
  HKR1 WILD-TYPE  148   66
        clus
vv       HKR1 MUTATED HKR1 WILD-TYPE
  COLON             6            148
  RECTUM            2             66
D396V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HKR1 MUTATED      4    4
  HKR1 WILD-TYPE  103  113
        clus
vv       HKR1 MUTATED HKR1 WILD-TYPE
  FEMALE            4            103
  MALE              4            113
D396V5, multiclass
                                clus
vv                               HKR1 MUTATED HKR1 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D396V6, multiclass
    clus
vv   HKR1 MUTATED HKR1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            2             15
D396V7, multiclass
    clus
vv   HKR1 MUTATED HKR1 WILD-TYPE
  N0            5            129
  N1            3             41
  N2            0             46
D396V8, multiclass
     clus
vv    HKR1 MUTATED HKR1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
D396V9, multiclass
     clus
vv    HKR1 MUTATED HKR1 WILD-TYPE
  I              1             47
  II             4             78
  III            2             58
  IV             1             28

Clustering(397) Variable = OLFM3 MUTATION ANALYSIS
D397V1, survival
                 sevent
clus2               0   1
  OLFM3 MUTATED     2   1
  OLFM3 WILD-TYPE 104  13
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              3             117 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              1              13 
$`OLFM3 MUTATED`
TCGA-AA-A024 TCGA-AG-A002 TCGA-AG-A00H 
       39.06        20.94        25.94 

$`OLFM3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       20.98        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y 
        1.02         1.02         1.02        13.91         6.02        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  OLFM3 MUTATED OLFM3 WILD-TYPE 
          20.94            0.92 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          39.06           72.07 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          25.94           10.62 
[1] "20.9 - 39.1 (25.9)" "0.9 - 72.1 (10.6)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
[1] "hr=" "1.4"
D397V2, continuous
D397V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      4    2
  OLFM3 WILD-TYPE  150   66
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D397V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      2    4
  OLFM3 WILD-TYPE  105  113
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
D397V5, multiclass
                                clus
vv                               OLFM3 MUTATED OLFM3 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D397V6, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             0              17
D397V7, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  N0             5             129
  N1             0              44
  N2             1              45
D397V8, multiclass
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
D397V9, multiclass
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  I               2              46
  II              3              79
  III             1              59
  IV              0              29

Clustering(398) Variable = HTR2C MUTATION ANALYSIS
D398V1, survival
                 sevent
clus2               0   1
  HTR2C MUTATED     5   1
  HTR2C WILD-TYPE 101  13
  HTR2C MUTATED HTR2C WILD-TYPE 
              6             114 
  HTR2C MUTATED HTR2C WILD-TYPE 
              1              13 
$`HTR2C MUTATED`
TCGA-AA-3666 TCGA-AA-3837 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A02Y TCGA-AG-A002 
        1.02         1.02         1.02         0.99        39.95        20.94 

$`HTR2C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  HTR2C MUTATED HTR2C WILD-TYPE 
           0.99            0.92 
  HTR2C MUTATED HTR2C WILD-TYPE 
          39.95           72.07 
  HTR2C MUTATED HTR2C WILD-TYPE 
           1.02           11.49 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
[1] "hr=" "1.5"
D398V2, continuous
D398V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR2C MUTATED      6    1
  HTR2C WILD-TYPE  148   67
        clus
vv       HTR2C MUTATED HTR2C WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D398V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR2C MUTATED      0    7
  HTR2C WILD-TYPE  107  110
        clus
vv       HTR2C MUTATED HTR2C WILD-TYPE
  FEMALE             0             107
  MALE               7             110
D398V5, multiclass
                                clus
vv                               HTR2C MUTATED HTR2C WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D398V6, multiclass
    clus
vv   HTR2C MUTATED HTR2C WILD-TYPE
  T1             0               9
  T2             4              43
  T3             3             147
  T4             0              17
D398V7, multiclass
    clus
vv   HTR2C MUTATED HTR2C WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
D398V8, multiclass
     clus
vv    HTR2C MUTATED HTR2C WILD-TYPE
  M0              5             184
  M1              1              30
  M1A             0               1
D398V9, multiclass
     clus
vv    HTR2C MUTATED HTR2C WILD-TYPE
  I               3              45
  II              1              81
  III             1              59
  IV              1              28

Clustering(399) Variable = ZNF492 MUTATION ANALYSIS
D399V1, survival
                  sevent
clus2                0   1
  ZNF492 MUTATED     6   0
  ZNF492 WILD-TYPE 100  14
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               6              114 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               0               14 
$`ZNF492 MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A02X 
        0.99         1.02        20.98         1.02        20.94        40.96 

$`ZNF492 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        61.94        38.01        72.07 

  ZNF492 MUTATED ZNF492 WILD-TYPE 
            0.99             0.92 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
           40.96            72.07 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
           10.98            10.95 
[1] "1.0 - 41.0 (11.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D399V2, continuous
D399V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      4    3
  ZNF492 WILD-TYPE  150   65
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D399V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      3    4
  ZNF492 WILD-TYPE  104  113
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D399V5, multiclass
                                clus
vv                               ZNF492 MUTATED ZNF492 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D399V6, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              2               15
D399V7, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
D399V8, multiclass
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D399V9, multiclass
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  I                2               46
  II               4               78
  III              0               60
  IV               0               29

Clustering(400) Variable = IL2 MUTATION ANALYSIS
D400V1, survival
               sevent
clus2             0   1
  IL2 MUTATED     3   0
  IL2 WILD-TYPE 103  14
  IL2 MUTATED IL2 WILD-TYPE 
            3           117 
  IL2 MUTATED IL2 WILD-TYPE 
            0            14 
$`IL2 MUTATED`
TCGA-AA-3977 TCGA-AA-A01R TCGA-AG-A002 
        1.02        35.01        20.94 

$`IL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  IL2 MUTATED IL2 WILD-TYPE 
         1.02          0.92 
  IL2 MUTATED IL2 WILD-TYPE 
        35.01         72.07 
  IL2 MUTATED IL2 WILD-TYPE 
        20.94         10.92 
[1] "1.0 - 35.0 (20.9)" "0.9 - 72.1 (10.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"IL2 WILD-TYPE"   "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"IL2 WILD-TYPE"   "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"IL2 WILD-TYPE"   "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "IL2 MUTATED" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" "IL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D400V2, continuous
D400V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  IL2 MUTATED      3    1
  IL2 WILD-TYPE  151   67
        clus
vv       IL2 MUTATED IL2 WILD-TYPE
  COLON            3           151
  RECTUM           1            67
D400V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  IL2 MUTATED      1    3
  IL2 WILD-TYPE  106  114
        clus
vv       IL2 MUTATED IL2 WILD-TYPE
  FEMALE           1           106
  MALE             3           114
D400V5, multiclass
                                clus
vv                               IL2 MUTATED IL2 WILD-TYPE
  COLON ADENOCARCINOMA                     2           126
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D400V6, multiclass
    clus
vv   IL2 MUTATED IL2 WILD-TYPE
  T1           0             9
  T2           3            44
  T3           1           149
  T4           0            17
D400V7, multiclass
    clus
vv   IL2 MUTATED IL2 WILD-TYPE
  N0           3           131
  N1           0            44
  N2           1            45
D400V8, multiclass
     clus
vv    IL2 MUTATED IL2 WILD-TYPE
  M0            3           186
  M1            0            31
  M1A           0             1
D400V9, multiclass
     clus
vv    IL2 MUTATED IL2 WILD-TYPE
  I             2            46
  II            0            82
  III           1            59
  IV            0            29

Clustering(401) Variable = ASB5 MUTATION ANALYSIS
D401V1, survival
                sevent
clus2              0   1
  ASB5 MUTATED     5   0
  ASB5 WILD-TYPE 101  14
  ASB5 MUTATED ASB5 WILD-TYPE 
             5            115 
  ASB5 MUTATED ASB5 WILD-TYPE 
             0             14 
$`ASB5 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-A002 
        0.99         1.02         1.02        20.98        20.94 

$`ASB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ASB5 MUTATED ASB5 WILD-TYPE 
          0.99           0.92 
  ASB5 MUTATED ASB5 WILD-TYPE 
         20.98          72.07 
  ASB5 MUTATED ASB5 WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D401V2, continuous
D401V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      6    1
  ASB5 WILD-TYPE  148   67
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  COLON             6            148
  RECTUM            1             67
D401V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      3    4
  ASB5 WILD-TYPE  104  113
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  FEMALE            3            104
  MALE              4            113
D401V5, multiclass
                                clus
vv                               ASB5 MUTATED ASB5 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
D401V6, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            1             16
D401V7, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  N0            5            129
  N1            0             44
  N2            2             44
D401V8, multiclass
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
D401V9, multiclass
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  I              1             47
  II             3             79
  III            1             59
  IV             1             28

Clustering(402) Variable = C9ORF79 MUTATION ANALYSIS
D402V1, survival
                   sevent
clus2                 0   1
  C9ORF79 MUTATED     6   0
  C9ORF79 WILD-TYPE 100  14
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
                6               114 
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
                0                14 
$`C9ORF79 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02F TCGA-AG-A002 
        0.99         0.99        20.98        35.01        39.95        20.94 

$`C9ORF79 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
             0.99              0.92 
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
            39.95             72.07 
  C9ORF79 MUTATED C9ORF79 WILD-TYPE 
            20.96             10.77 
[1] "1.0 - 40.0 (21.0)" "0.9 - 72.1 (10.8)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C9ORF79 WILD-TYPE"   "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C9ORF79 MUTATED" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" "C9ORF79 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D402V2, continuous
D402V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF79 MUTATED     10    3
  C9ORF79 WILD-TYPE  144   65
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  COLON               10               144
  RECTUM               3                65
D402V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF79 MUTATED      7    6
  C9ORF79 WILD-TYPE  100  111
        clus
vv       C9ORF79 MUTATED C9ORF79 WILD-TYPE
  FEMALE               7               100
  MALE                 6               111
D402V5, multiclass
                                clus
vv                               C9ORF79 MUTATED C9ORF79 WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
D402V6, multiclass
    clus
vv   C9ORF79 MUTATED C9ORF79 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               9               141
  T4               3                14
D402V7, multiclass
    clus
vv   C9ORF79 MUTATED C9ORF79 WILD-TYPE
  N0               6               128
  N1               3                41
  N2               4                42
D402V8, multiclass
     clus
vv    C9ORF79 MUTATED C9ORF79 WILD-TYPE
  M0               11               178
  M1                2                29
  M1A               0                 1
D402V9, multiclass
     clus
vv    C9ORF79 MUTATED C9ORF79 WILD-TYPE
  I                 1                47
  II                5                77
  III               5                55
  IV                2                27

Clustering(403) Variable = COL6A3 MUTATION ANALYSIS
D403V1, survival
                  sevent
clus2               0  1
  COL6A3 MUTATED   14  2
  COL6A3 WILD-TYPE 92 12
  COL6A3 MUTATED COL6A3 WILD-TYPE 
              16              104 
  COL6A3 MUTATED COL6A3 WILD-TYPE 
               2               12 
$`COL6A3 MUTATED`
TCGA-A6-2677 TCGA-A6-3807 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 
       17.79        10.92         0.99         0.99         0.99         1.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01Q TCGA-AA-A01R 
       17.00         4.01        20.98         0.99         1.02        35.01 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01L TCGA-AG-A026 
        1.02        20.94        12.00         1.94 

$`COL6A3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       13.02        38.07         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W 
       23.01        17.03        15.91        13.02         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        49.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  COL6A3 MUTATED COL6A3 WILD-TYPE 
            0.99             0.92 
  COL6A3 MUTATED COL6A3 WILD-TYPE 
           35.01            72.07 
  COL6A3 MUTATED COL6A3 WILD-TYPE 
           2.975           12.000 
[1] "1.0 - 35.0 (3.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "COL6A3 MUTATED"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE"   "COL6A3 MUTATED" "COL6A3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" "COL6A3 WILD-TYPE" 
[1] "hr=" "1.6"
D403V2, continuous
D403V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A3 MUTATED     22    5
  COL6A3 WILD-TYPE  132   63
        clus
vv       COL6A3 MUTATED COL6A3 WILD-TYPE
  COLON              22              132
  RECTUM              5               63
D403V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A3 MUTATED     15   12
  COL6A3 WILD-TYPE   92  105
        clus
vv       COL6A3 MUTATED COL6A3 WILD-TYPE
  FEMALE             15               92
  MALE               12              105
D403V5, multiclass
                                clus
vv                               COL6A3 MUTATED COL6A3 WILD-TYPE
  COLON ADENOCARCINOMA                       15              113
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D403V6, multiclass
    clus
vv   COL6A3 MUTATED COL6A3 WILD-TYPE
  T1              1                8
  T2              3               44
  T3             19              131
  T4              4               13
D403V7, multiclass
    clus
vv   COL6A3 MUTATED COL6A3 WILD-TYPE
  N0             16              118
  N1              6               38
  N2              5               41
D403V8, multiclass
     clus
vv    COL6A3 MUTATED COL6A3 WILD-TYPE
  M0              24              165
  M1               2               29
  M1A              0                1
D403V9, multiclass
     clus
vv    COL6A3 MUTATED COL6A3 WILD-TYPE
  I                3               45
  II              12               70
  III              9               51
  IV               2               27

Clustering(404) Variable = LUM MUTATION ANALYSIS
D404V1, survival
               sevent
clus2             0   1
  LUM MUTATED     3   0
  LUM WILD-TYPE 103  14
  LUM MUTATED LUM WILD-TYPE 
            3           117 
  LUM MUTATED LUM WILD-TYPE 
            0            14 
$`LUM MUTATED`
TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-A002 
       20.98        35.01        20.94 

$`LUM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  LUM MUTATED LUM WILD-TYPE 
        20.94          0.92 
  LUM MUTATED LUM WILD-TYPE 
        35.01         72.07 
  LUM MUTATED LUM WILD-TYPE 
        20.98         10.62 
[1] "20.9 - 35.0 (21.0)" "0.9 - 72.1 (10.6)" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"LUM WILD-TYPE" "LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"LUM WILD-TYPE" "LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"LUM WILD-TYPE" "LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"LUM WILD-TYPE"   "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "LUM MUTATED" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" "LUM WILD-TYPE" 
[1] "hr="     "2.6e+07"
D404V2, continuous
D404V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      5    1
  LUM WILD-TYPE  149   67
        clus
vv       LUM MUTATED LUM WILD-TYPE
  COLON            5           149
  RECTUM           1            67
D404V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  LUM MUTATED      4    2
  LUM WILD-TYPE  103  115
        clus
vv       LUM MUTATED LUM WILD-TYPE
  FEMALE           4           103
  MALE             2           115
D404V5, multiclass
                                clus
vv                               LUM MUTATED LUM WILD-TYPE
  COLON ADENOCARCINOMA                     3           125
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
D404V6, multiclass
    clus
vv   LUM MUTATED LUM WILD-TYPE
  T1           0             9
  T2           1            46
  T3           3           147
  T4           2            15
D404V7, multiclass
    clus
vv   LUM MUTATED LUM WILD-TYPE
  N0           4           130
  N1           0            44
  N2           2            44
D404V8, multiclass
     clus
vv    LUM MUTATED LUM WILD-TYPE
  M0            6           183
  M1            0            31
  M1A           0             1
D404V9, multiclass
     clus
vv    LUM MUTATED LUM WILD-TYPE
  I             1            47
  II            3            79
  III           2            58
  IV            0            29

Clustering(405) Variable = SORCS3 MUTATION ANALYSIS
D405V1, survival
                  sevent
clus2               0  1
  SORCS3 MUTATED    7  1
  SORCS3 WILD-TYPE 99 13
  SORCS3 MUTATED SORCS3 WILD-TYPE 
               8              112 
  SORCS3 MUTATED SORCS3 WILD-TYPE 
               1               13 
$`SORCS3 MUTATED`
TCGA-AA-3710 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-3892 
        1.02        18.02         4.01        20.98         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A016 
       20.94         1.02 

$`SORCS3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01L 
       25.94        23.01        17.03        15.91        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SORCS3 MUTATED SORCS3 WILD-TYPE 
            1.02             0.92 
  SORCS3 MUTATED SORCS3 WILD-TYPE 
           20.98            72.07 
  SORCS3 MUTATED SORCS3 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS3 WILD-TYPE"   "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
  "SORCS3 MUTATED" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" "SORCS3 WILD-TYPE" 
[1] "hr=" "1.4"
D405V2, continuous
D405V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS3 MUTATED      7    5
  SORCS3 WILD-TYPE  147   63
        clus
vv       SORCS3 MUTATED SORCS3 WILD-TYPE
  COLON               7              147
  RECTUM              5               63
D405V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS3 MUTATED      7    5
  SORCS3 WILD-TYPE  100  112
        clus
vv       SORCS3 MUTATED SORCS3 WILD-TYPE
  FEMALE              7              100
  MALE                5              112
D405V5, multiclass
                                clus
vv                               SORCS3 MUTATED SORCS3 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D405V6, multiclass
    clus
vv   SORCS3 MUTATED SORCS3 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              6              144
  T4              2               15
D405V7, multiclass
    clus
vv   SORCS3 MUTATED SORCS3 WILD-TYPE
  N0              9              125
  N1              2               42
  N2              1               45
D405V8, multiclass
     clus
vv    SORCS3 MUTATED SORCS3 WILD-TYPE
  M0              11              178
  M1               1               30
  M1A              0                1
D405V9, multiclass
     clus
vv    SORCS3 MUTATED SORCS3 WILD-TYPE
  I                4               44
  II               5               77
  III              2               58
  IV               1               28

Clustering(406) Variable = ELAVL2 MUTATION ANALYSIS
D406V1, survival
                  sevent
clus2                0   1
  ELAVL2 MUTATED     4   0
  ELAVL2 WILD-TYPE 102  14
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               4              116 
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
               0               14 
$`ELAVL2 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3977 TCGA-AG-A002 
        0.99         0.99         1.02        20.94 

$`ELAVL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
            0.99             0.92 
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
           20.94            72.07 
  ELAVL2 MUTATED ELAVL2 WILD-TYPE 
           1.005           11.490 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED"   "ELAVL2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE"   "ELAVL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ELAVL2 MUTATED" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" "ELAVL2 WILD-TYPE" 
[1] "hr="     "9200000"
D406V2, continuous
D406V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ELAVL2 MUTATED      5    2
  ELAVL2 WILD-TYPE  149   66
        clus
vv       ELAVL2 MUTATED ELAVL2 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D406V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ELAVL2 MUTATED      3    4
  ELAVL2 WILD-TYPE  104  113
        clus
vv       ELAVL2 MUTATED ELAVL2 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
D406V5, multiclass
                                clus
vv                               ELAVL2 MUTATED ELAVL2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
D406V6, multiclass
    clus
vv   ELAVL2 MUTATED ELAVL2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              0               17
D406V7, multiclass
    clus
vv   ELAVL2 MUTATED ELAVL2 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              2               44
D406V8, multiclass
     clus
vv    ELAVL2 MUTATED ELAVL2 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
D406V9, multiclass
     clus
vv    ELAVL2 MUTATED ELAVL2 WILD-TYPE
  I                1               47
  II               3               79
  III              2               58
  IV               0               29

Clustering(407) Variable = DAPK1 MUTATION ANALYSIS
D407V1, survival
                 sevent
clus2              0  1
  DAPK1 MUTATED   10  0
  DAPK1 WILD-TYPE 96 14
  DAPK1 MUTATED DAPK1 WILD-TYPE 
             10             110 
  DAPK1 MUTATED DAPK1 WILD-TYPE 
              0              14 
$`DAPK1 MUTATED`
TCGA-AA-3811 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A010 
        0.99         1.02         0.99         1.02         0.99        20.98 
TCGA-AA-A01R TCGA-AG-3582 TCGA-AG-3892 TCGA-AG-A002 
       35.01         1.02         1.02        20.94 

$`DAPK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DAPK1 MUTATED DAPK1 WILD-TYPE 
           0.99            0.92 
  DAPK1 MUTATED DAPK1 WILD-TYPE 
          35.01           72.07 
  DAPK1 MUTATED DAPK1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE"   "DAPK1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DAPK1 WILD-TYPE"   "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DAPK1 MUTATED" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" "DAPK1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D407V2, continuous
D407V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DAPK1 MUTATED     11    4
  DAPK1 WILD-TYPE  143   64
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  COLON             11             143
  RECTUM             4              64
D407V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DAPK1 MUTATED      8    7
  DAPK1 WILD-TYPE   99  110
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  FEMALE             8              99
  MALE               7             110
D407V5, multiclass
                                clus
vv                               DAPK1 MUTATED DAPK1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
D407V6, multiclass
    clus
vv   DAPK1 MUTATED DAPK1 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             7             143
  T4             2              15
D407V7, multiclass
    clus
vv   DAPK1 MUTATED DAPK1 WILD-TYPE
  N0             9             125
  N1             4              40
  N2             2              44
D407V8, multiclass
     clus
vv    DAPK1 MUTATED DAPK1 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             1               0
D407V9, multiclass
     clus
vv    DAPK1 MUTATED DAPK1 WILD-TYPE
  I               5              43
  II              3              79
  III             4              56
  IV              2              27
                     V1.D                        V2                        V3 
          "Time to Death"                     "AGE" "PRIMARY.SITE.OF.DISEASE" 
                       V4                        V5                        V6 
                 "GENDER"       "HISTOLOGICAL.TYPE"             "PATHOLOGY.T" 
                       V7                        V8                        V9 
            "PATHOLOGY.N"     "PATHOLOGICSPREAD(M)"             "TUMOR.STAGE" 
> q(save="no")
