
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/KIRC-TP/2404299/1.GDAC_mergedClustering.Finished/KIRC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRC-TP/2330207/1.GDAC_clinicalDataPicker.Finished/KIRC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=502, in cluster file=503, common to both=502
[1]  10 502
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
34 24 14 
 1  2  3 
34 24 14 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
15 23 34 
 1  2  3 
15 23 34 
[1] "CN_CNMF"
[1] 3
  1   2   3 
132 197 164 
  1   2   3 
132 197 164 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 97 120  66 
  1   2   3 
 97 120  66 
[1] "RPPA_CNMF"
[1] 3
  1   2   3 
160 150 144 
  1   2   3 
160 150 144 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
132 215 107 
  1   2   3 
132 215 107 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
199 180 101 
  1   2   3 
199 180 101 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 73 215 192 
  1   2   3 
 73 215 192 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
209 106 165 
  1   2   3 
209 106 165 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 51 281 148 
  1   2   3 
 51 281 148 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 502 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3316 
        1120         1436           16         1190          735         1493 
TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
        1491         1130         1508         1477         1105         1186 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3328 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3335 
         751         1137          785          706         1485          664 
TCGA-A3-3336 TCGA-A3-3343 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3351 
        1043          944          137         1097         1385          910 
TCGA-A3-3352 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3363 
         561         1425         1307         1286         1559          319 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3374 
         872         1054          776          735          334         1313 
TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
        1070          630          567          574          861          726 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 
         616         3343          884         2566         2223         2017 
TCGA-AK-3430 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 
         480         1853         2192         2086         2043         1744 
TCGA-AK-3443 TCGA-AK-3444 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3450 TCGA-AK-3451 
        1423         1471         1279         1217         1499         1481 
TCGA-AK-3453 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
        1190          873          683           46         1168          951 
TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-AS-3778 TCGA-B0-4688 TCGA-B0-4690 
         853          369           40           NA           98           43 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
         139           77          106          866          577           42 
TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4707 
         109           NA          208          182           26          599 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
           5         1337          201            3          214          266 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        1196           18           47         1491         1081          848 
TCGA-B0-4818 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4824 
         426          183         1229         1111          454         1463 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 
         884          307         2385         2090         1238         1292 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
         728         1638          139         1636          320          313 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-4852 
        1985         1199          792          882           69         1079 
TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5083 
        2145          608         1291          222          233          465 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
         221          769          433          459          333          245 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5102 
          67          151         1584          485         1913         2763 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5110 
        2751         1597          927          162          586          560 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5120 
          22           90          103           NA           48           55 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 
         186          190          677           10         2180         2781 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
        1487         1852          469         1042          944         1135 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5702 TCGA-B0-5703 
        2181         2425          375         1276         1158          262 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5711 
        3335         2414         2592         2357          957         2553 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
        2438         1864         2324          178          194           50 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 
         110           90           15          214          315          258 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5834 
         191          168          291          175            7           38 
TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4143 
          16          141          166           11            7          709 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4619 
         511          379          279          404          255           19 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5162 
         226          215          181           90          133           22 
TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 
           4           23            8          248           14          194 
TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 
         197           15          219           14         3377         2600 
TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4164 TCGA-BP-4165 
        2881         2746         3074         2839          992         2946 
TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 
          13         2718          701         2343         1893         1879 
TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4325 TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 
        1955         1670         2964         1624          108          845 
TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 
        1888         2453         1133          645          460            2 
TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 
        2746          562         1589         2256         1912         1666 
TCGA-BP-4345 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4352 
        1516         1493         1367          372          969          344 
TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 
         375         1034          953          374         2208         2324 
TCGA-BP-4760 TCGA-BP-4761 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4766 
        2249          182         1343         1270         2184         1461 
TCGA-BP-4768 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4774 TCGA-BP-4775 
         400         1876          329          161         1884         1842 
TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4787 
         410         1731         2080          354         1854          479 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
        1489         1111          620         1107          334         1133 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 
        1124          203         1459          211         2660         2172 
TCGA-BP-4961 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4967 
        1935         1785         1834         1862         1871          204 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4973 
        1745         1794          432         1487         1501         1384 
TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 
         220         1433         1632          454         1097         1013 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4988 TCGA-BP-4989 
        1412          951          785         1124          827          117 
TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 
        1044          500          176         1307         1371          931 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
        1266          563         1177         1126          840         1140 
TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5169 TCGA-BP-5170 
        1071         1092          877         1463          192         2411 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 
          54         2257          932         1590          293         1912 
TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 
        1892         1495         1165         1102         1133         1132 
TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5192 
         693          406          822         1010          966          714 
TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 
         408          748         1018          603         1354          881 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
         951           29         1820         1416         1924         2227 
TCGA-CJ-4638 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 
         431         2308         1998         1661         1617         1792 
TCGA-CJ-4644 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 
         336          645         2554         1497         2422         1435 
TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4881 
        2258         2283         2353         1955         2186         2013 
TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4888 
        1883          993         2125         1951          649         1566 
TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 
        1945         2085          818         1520          749          841 
TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
        1200         1808         1527         1274         1450         1519 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4912 
        1559         1792         1495         1498         1530         1656 
TCGA-CJ-4913 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 
        1173         1372           92          139          572         1942 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 
        2190         2429         2575          782          573          678 
TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 
         768          551         1883         1889         2230         2038 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6032 
           6         1855           NA           NA         1905         2548 
TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 
          NA         1964         2799         2489          164         2609 
TCGA-CW-5587 TCGA-CW-5588 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 
        2226         2016         2377         1075         2270           41 
TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CW-6096 TCGA-CW-6097 TCGA-CZ-4853 
        2311         2308         2430         2127          570          774 
TCGA-CZ-4854 TCGA-CZ-4856 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4860 
        1404           18         1432         1943         1787          205 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 
         445         1843         1690         2830          165         1768 
TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5456 
        1668         1556           25          722          561         1558 
TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 
        1547         1558         1515         1430          330          311 
TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 
         662         1492         1377          685           73           59 
TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
         945           NA         2042         1491         1629          373 
TCGA-CZ-5987 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 
         435          693         1599         1329         1398          909 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
         370          355         1130          723         1005          727 
TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5906 TCGA-EU-5907 
         550          118          206          126 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=153,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=448,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=428,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "PATHOLOGY.T"                
[5] "PATHOLOGY.N"                 "PATHOLOGICSPREAD(M)"        
[7] "TUMOR.STAGE"                
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
  1   2   3   4 
245  52 124  81 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 502 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
249  64 178  11 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
249  64 178  11 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
249  64 178  11 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
249  64 178  11 
PATHOLOGY.N, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
245  52 124  81 
[1] "table(vv)"
vv
  I  II III  IV 
245  52 124  81 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
245  52 124  81 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
245  52 124  81 

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 29  4
  subtype2 16  8
  subtype3 13  1
subtype1 subtype2 subtype3 
      33       24       14 
subtype1 subtype2 subtype3 
       4        8        1 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 
       18.44        42.28        51.25        28.67        24.16        18.64 
TCGA-A3-3383 TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 
       28.31        48.36        22.45         6.38         3.62         0.49 
TCGA-B8-4151 TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
        9.17         8.38         0.62       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       21.83         4.50        36.07        43.17        20.71        18.87 
TCGA-AK-3426 TCGA-B2-4098 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       29.06         1.64        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B8-4148 
        5.85        12.46 

subtype1 subtype2 subtype3 
    0.49     0.53     1.32 
subtype1 subtype2 subtype3 
  101.06    93.34    84.36 
subtype1 subtype2 subtype3 
  31.040   36.740   24.985 
[1] "0.5 - 101.1 (31.0)" "0.5 - 93.3 (36.7)"  "1.3 - 84.4 (25.0)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 15 19
  subtype2 10 14
  subtype3  4 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   19
  subtype2   10   14
  subtype3    4   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       10        4
  MALE         19       14       10
D1V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1 18  0
  subtype2 10  3
  subtype3  7  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18    0
  subtype2   10    3
  subtype3    7    0
   clus
vv  subtype1 subtype2 subtype3
  0       18       10        7
  1        0        3        0
D1V7, binary
          cls
clus        0  1
  subtype1 33  1
  subtype2 20  4
  subtype3 14  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    1
  subtype2   20    4
  subtype3   14    0
    clus
vv   subtype1 subtype2 subtype3
  M0       33       20       14
  M1        1        4        0
D1V8, multiclass

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  2
  subtype2 16  7
  subtype3 29  4
subtype1 subtype2 subtype3 
      15       23       33 
subtype1 subtype2 subtype3 
       2        7        4 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4148 
        5.85         1.64        12.46 

$subtype2
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 
       36.82         0.53        39.12        49.08        49.02        37.15 
TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 
       36.33        21.83         4.50        36.07        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4163 TCGA-BP-4167 
       18.87        29.06        23.31         7.43        93.34        89.36 
TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 TCGA-A3-3326 
       47.21        49.58        48.56        38.99        24.69        37.38 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.04        45.53        29.92        18.44 
TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 
       42.28        51.25        28.67        24.16        18.64        28.31 
TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 TCGA-B8-4151 
       48.36        22.45         6.38         3.62         0.49         9.17 
TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
        8.38         0.62        90.28       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

subtype1 subtype2 subtype3 
    1.32     0.53     0.49 
subtype1 subtype2 subtype3 
   84.36    93.34   101.06 
subtype1 subtype2 subtype3 
   24.16    36.82    31.04 
[1] "1.3 - 84.4 (24.2)"  "0.5 - 93.3 (36.8)"  "0.5 - 101.1 (31.0)"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1  5 10
  subtype2  9 14
  subtype3 15 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   10
  subtype2    9   14
  subtype3   15   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5        9       15
  MALE         10       14       19
D2V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D2V5, multiclass
D2V6, binary
          cls
clus        0  1
  subtype1  7  0
  subtype2 11  3
  subtype3 17  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    0
  subtype2   11    3
  subtype3   17    0
   clus
vv  subtype1 subtype2 subtype3
  0        7       11       17
  1        0        3        0
D2V7, binary
          cls
clus        0  1
  subtype1 15  0
  subtype2 19  4
  subtype3 33  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    0
  subtype2   19    4
  subtype3   33    1
    clus
vv   subtype1 subtype2 subtype3
  M0       15       19       33
  M1        0        4        1
D2V8, multiclass

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  82  50
  subtype2 152  43
  subtype3  98  65
subtype1 subtype2 subtype3 
     132      195      163 
subtype1 subtype2 subtype3 
      50       43       65 
$subtype1
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 
       36.82        39.12        49.08        49.02        37.15        49.58 
TCGA-A3-3335 TCGA-A3-3336 TCGA-A3-3346 TCGA-A3-3352 TCGA-A3-3372 TCGA-A3-3382 
       21.83        34.29         4.50        18.44        24.16        18.87 
TCGA-AK-3430 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3450 TCGA-AK-3454 
       15.78        68.58        67.17        42.05        49.28        28.70 
TCGA-AK-3458 TCGA-AK-3461 TCGA-B0-4691 TCGA-B0-4707 TCGA-B0-4710 TCGA-B0-4713 
       38.40        28.04         4.57        19.69         0.16         6.61 
TCGA-B0-4813 TCGA-B0-4821 TCGA-B0-4828 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4838 
        0.59        40.41        10.09        40.70        42.48        23.93 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5098 
       10.29        29.00         2.27        15.09        10.95        52.08 
TCGA-B0-5102 TCGA-B0-5113 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5703 
       90.84         0.72         0.33        15.42        41.95         8.61 
TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4620 
        7.04         5.52         9.57         0.53         0.36         7.43 
TCGA-BP-4164 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4331 
       32.61        61.78        64.27        97.45         3.55        80.65 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4761 
       90.28        74.17        62.86        31.86        11.31         5.98 
TCGA-BP-4763 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 
       41.75        48.03        13.15        68.38        15.75        36.39 
TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4986 TCGA-BP-4987 
        6.67        87.45        58.68        60.30        25.81        36.95 
TCGA-BP-4989 TCGA-BP-4993 TCGA-BP-5000 TCGA-BP-5173 TCGA-BP-5175 TCGA-BP-5178 
        3.85         5.79        18.51         1.78        30.64        62.86 
TCGA-BP-5180 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5198 
       62.20        36.23        37.22        27.02        31.76        19.82 
TCGA-BP-5200 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4643 
       28.96        31.27        46.55        14.17        65.69        58.92 
TCGA-CJ-4644 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4893 
       11.05        79.63        74.24        64.27        66.18        24.62 
TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-5675 TCGA-CJ-5677 TCGA-CJ-5679 
       39.45        41.88        47.67        79.86        25.71        22.29 
TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6032 TCGA-CJ-6033 
       25.25        61.91        60.99        53.42        83.77         7.36 
TCGA-CW-5580 TCGA-CW-5584 TCGA-CW-5587 TCGA-CW-5591 TCGA-CZ-4854 TCGA-CZ-4857 
       64.57         5.39        73.18        74.63        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5456 TCGA-CZ-5461 
       63.88        58.75        93.04        58.13        51.22        10.85 
TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5468 TCGA-CZ-5982 TCGA-CZ-5984 
       10.22        49.05        45.27         1.94        67.13        49.02 
TCGA-CZ-5985 TCGA-CZ-5987 TCGA-DV-5565 TCGA-DV-5573 TCGA-DV-5575 TCGA-EU-5907 
       53.56        14.30        43.69        37.15        33.04         4.14 

$subtype2
TCGA-A3-3307 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 
       47.21        48.56        36.33        38.99        37.38        48.82 
TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 
       31.04        29.92        46.85        42.97        42.28        51.25 
TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3387 
       34.65        25.51        10.98        18.64        28.31        20.25 
TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3431 TCGA-AK-3444 TCGA-AK-3451 TCGA-AK-3455 
       73.08        66.31        60.92        48.36        48.69        22.45 
TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4706 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
       31.27         2.53         0.85         0.10         7.04         8.75 
TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 TCGA-B0-4841 TCGA-B0-4846 
        1.55        14.01        14.93        48.10         4.57        39.42 
TCGA-B0-4847 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5085 
       26.04        35.47        70.52        19.99        42.44        25.28 
TCGA-B0-5088 TCGA-B0-5099 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5115 TCGA-B0-5119 
       14.24        15.95        90.44        18.41         2.96         1.58 
TCGA-B0-5120 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
        1.81         6.12         6.25        71.67        48.89        60.89 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5705 
       34.26        31.04        37.32        71.70        79.73       109.64 
TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4099 
       79.36        31.46        83.93        61.28        76.41         3.62 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5639 TCGA-B4-5834 TCGA-B4-5844 TCGA-B8-4146 
        2.96         0.49         6.28         1.25         0.23        16.80 
TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 
       12.46         9.17        13.28         8.38         5.95         4.37 
TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 
        7.20         0.46       111.02        85.48        94.72        90.28 
TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4166 TCGA-BP-4170 TCGA-BP-4326 TCGA-BP-4329 
      101.06        93.34         0.43        77.03        53.39        27.78 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.12        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 
       49.08        44.94        12.23        31.33        72.59        76.41 
TCGA-BP-4762 TCGA-BP-4765 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4789 
       44.15        71.80        61.94        60.56        13.48        48.95 
TCGA-BP-4790 TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4968 
       36.53        36.95         6.94        61.22        61.51        57.37 
TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4975 TCGA-BP-4977 TCGA-BP-4981 
       58.98        49.35        45.50        47.11        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4991 TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5001 TCGA-BP-5004 
       33.30        34.32        45.07        41.62        38.70        37.02 
TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5176 
       27.62        37.48        48.10        79.27        74.20        52.27 
TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 
        9.63        49.15        38.30        37.25        22.78        13.35 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5202 TCGA-CJ-4634 
       33.21        23.47        13.41        44.52         0.95        59.84 
TCGA-CJ-4636 TCGA-CJ-4639 TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4874 
       63.25        75.88        53.16        21.21        49.22        75.06 
TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 
       71.87        32.65        69.86        64.14        21.34        49.97 
TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4902 TCGA-CJ-4904 TCGA-CJ-4905 
       27.65        59.44        50.20        49.94        58.92        49.15 
TCGA-CJ-4908 TCGA-CJ-4913 TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5672 TCGA-CJ-5678 
       50.30        38.56        45.11         4.57        72.00        18.84 
TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5589 
       62.10        73.32        92.02        81.83        85.78        78.15 
TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4861 TCGA-CZ-5451 
       75.98        79.89        25.45         0.59        14.63        54.84 
TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5463 
        0.82        23.74        18.44        51.22        49.81        21.76 
TCGA-CZ-5467 TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5568 
        2.40        12.26        22.78        52.57        45.96        12.16 
TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       11.67        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3325 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3363 
        0.53        24.16        24.69        36.07        45.53        10.49 
TCGA-A3-3365 TCGA-A3-3374 TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3385 TCGA-AK-3425 
       28.67        43.17        35.18        20.71        23.87       109.91 
TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 
       29.06        84.36        72.07        57.34        46.78        40.01 
TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4690 
       39.12         1.51        12.13         1.32         3.22         1.41 
TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 
        3.48        28.47        18.97         1.38         3.58        65.06 
TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4712 TCGA-B0-4811 TCGA-B0-4815 TCGA-B0-4816 
        6.84         5.98        43.96        39.32        49.02        35.54 
TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4833 TCGA-B0-4834 
       27.88         6.02        36.53        29.06        78.41        68.71 
TCGA-B0-4839 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4845 TCGA-B0-5080 TCGA-B0-5081 
       53.85        53.79        10.52        65.26         7.30         7.66 
TCGA-B0-5084 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5106 
        7.27         8.05         2.20         4.96        62.89        52.50 
TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5691 
       30.48         5.33        19.27         3.39        22.26        91.43 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5712 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
       38.07        77.49        80.15         5.85         6.38         1.64 
TCGA-B2-5635 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5836 TCGA-B4-5838 TCGA-B8-4143 
       10.36         5.75         0.23         4.64         5.46        23.31 
TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 
        0.62         7.07         2.96         0.72         0.13         0.76 
TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 
        0.26         8.15         0.46         6.38         6.48         0.49 
TCGA-BP-4165 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4177 TCGA-BP-4334 
       96.85        89.36        23.05        62.24        54.90        21.21 
TCGA-BP-4337 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4756 TCGA-BP-4760 TCGA-BP-4769 
        0.07        12.33        33.99        12.30        73.94        61.68 
TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4795 
       10.82         5.29        56.91        11.64        60.95        20.38 
TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4804 TCGA-BP-4960 TCGA-BP-4961 TCGA-BP-4967 
       10.98        37.25        47.97        71.41        63.62         6.71 
TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 TCGA-BP-4976 TCGA-BP-4983 TCGA-BP-4985 
       14.20        48.89         7.23        53.65        46.42        31.27 
TCGA-BP-4988 TCGA-BP-4992 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5009 
       27.19        16.44        42.97        30.61        35.21        35.90 
TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4637 TCGA-CJ-4641 
       28.83         6.31        24.59        33.47        73.22        54.61 
TCGA-CJ-4869 TCGA-CJ-4872 TCGA-CJ-4875 TCGA-CJ-4882 TCGA-CJ-4888 TCGA-CJ-4889 
       83.97        47.18        77.36        61.91        51.48        63.95 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4903 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4918 
       68.55        26.89        51.25        49.25        54.44         3.02 
TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5681 TCGA-CJ-5686 TCGA-CJ-5689 
       18.81        63.85        84.66        18.12        67.00         0.20 
TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6090 TCGA-CW-6097 
       75.55        62.63        66.28         1.35        75.88        18.74 
TCGA-CZ-4860 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4865 TCGA-CZ-5452 TCGA-CZ-5457 
        6.74        60.59        55.56         5.42        51.16        50.86 
TCGA-CZ-5460 TCGA-CZ-5466 TCGA-CZ-5469 TCGA-DV-5567 TCGA-DV-5574 TCGA-DV-5576 
       47.01        22.52        31.07        29.88        23.77        23.90 
TCGA-EU-5905 
        3.88 

subtype1 subtype2 subtype3 
    0.16     0.10     0.07 
subtype1 subtype2 subtype3 
   97.45   111.02   109.91 
subtype1 subtype2 subtype3 
  36.605   37.480   28.470 
[1] "0.2 - 97.5 (36.6)"  "0.1 - 111.0 (37.5)" "0.1 - 109.9 (28.5)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[325] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[325] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[223] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[289] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[325] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[385] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[409] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[439] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[463] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[481] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[487] "subtype2" "subtype3" "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus         0   1
  subtype1  42  90
  subtype2  78 119
  subtype3  51 113
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   90
  subtype2   78  119
  subtype3   51  113
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       42       78       51
  MALE         90      119      113
D3V4, continuous
D3V5, multiclass
D3V6, binary
          cls
clus        0  1
  subtype1 55  5
  subtype2 91  2
  subtype3 82 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55    5
  subtype2   91    2
  subtype3   82   11
   clus
vv  subtype1 subtype2 subtype3
  0       55       91       82
  1        5        2       11
D3V7, binary
          cls
clus         0   1
  subtype1 102  30
  subtype2 181  16
  subtype3 134  30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102   30
  subtype2  181   16
  subtype3  134   30
    clus
vv   subtype1 subtype2 subtype3
  M0      102      181      134
  M1       30       16       30
D3V8, multiclass

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 47 49
  subtype2 98 21
  subtype3 41 25
subtype1 subtype2 subtype3 
      96      119       66 
subtype1 subtype2 subtype3 
      49       21       25 
$subtype1
TCGA-A3-3357 TCGA-A3-3367 TCGA-A3-3387 TCGA-AK-3434 TCGA-AK-3445 TCGA-B0-4688 
       46.85        34.65        20.25        68.58        42.05         3.22 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4703 
        1.41         4.57         2.53        28.47         6.84         5.98 
TCGA-B0-4707 TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 
       19.69         0.16        43.96         6.61         7.04         8.75 
TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 
        0.59         1.55        40.41        36.53        29.06        10.09 
TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4845 TCGA-B0-4848 TCGA-B0-5094 TCGA-B0-5096 
       10.52        10.29        65.26        29.00        10.95         2.20 
TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5116 
        4.96        15.95        62.89        52.50        30.48         3.39 
TCGA-B0-5121 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 
        6.12         0.33        15.42        31.04        71.70        79.73 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5712 TCGA-B4-5832 TCGA-B4-5838 TCGA-B8-4153 
       41.95        79.36        80.15         0.23         5.46        13.28 
TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5178 TCGA-BP-5180 
        5.95         2.96        28.83         6.31        62.86        62.20 
TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4901 TCGA-CJ-4902 
       27.02        33.21        19.82        31.27        47.67        49.94 
TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 
       49.25        54.44        38.56         4.57        18.81        63.85 
TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 
       79.86        84.66        25.71        18.84        22.29        25.25 
TCGA-CJ-5682 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 
       61.91         0.20        60.99        53.42        75.55         7.36 
TCGA-CW-5580 TCGA-CW-5584 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4866 
       64.57         5.39        35.34        74.63        75.88        58.13 
TCGA-CZ-5456 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 
       51.22        47.01        10.85        49.05        45.27        22.52 
TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-EU-5907 
        1.94        31.07        49.02        53.56        14.30         4.14 

$subtype2
TCGA-A3-3358 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3385 TCGA-AK-3428 
       42.97        25.51        10.98        35.18        23.87        73.08 
TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3454 
       60.92        72.07        57.34        49.28        39.12        28.70 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4706 TCGA-B0-4714 TCGA-B0-4811 
       38.40        31.27        28.04         0.85         0.10        39.32 
TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 
       14.01        14.93        48.10         4.57        39.42        26.04 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 
        2.27        35.47        90.84        90.44        18.41         0.72 
TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5691 
        2.96         1.58         1.81         6.25        71.67        91.43 
TCGA-B0-5693 TCGA-B0-5695 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5707 
       60.89        34.26        12.33         8.61       109.64        85.22 
TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-5639 
       31.46        83.93        61.28        76.41         2.96         6.28 
TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 
        9.57         5.75         1.25         4.64         0.36         0.23 
TCGA-B8-4146 TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 
       16.80         4.37         0.26         8.15         0.46         6.38 
TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4801 TCGA-BP-4993 TCGA-BP-5168 TCGA-BP-5173 
        7.20         0.46        36.95         5.79        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 
       74.20        52.27         9.63        49.15        36.23        37.25 
TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5200 
       37.22        22.78        23.47        13.41        44.52        28.96 
TCGA-BP-5202 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 
        0.95        59.44        51.25        58.92        49.15        50.30 
TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 
       18.12        62.10        73.32        83.77        92.02        81.83 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       85.78        73.18        78.15        75.98        79.89        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 
        0.59        58.75        93.04        54.84         0.82        23.74 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5463 TCGA-CZ-5467 TCGA-CZ-5982 
       18.44        50.86        49.81        21.76         2.40        67.13 
TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 
       12.26        22.78        52.57        43.69        45.96        29.88 
TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       11.67        37.15        33.04        18.08         6.77 

$subtype3
TCGA-AK-3425 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 
      109.91         3.48        18.97         1.38         3.58        65.06 
TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4842 TCGA-B0-4945 
       49.02        35.54        27.88         6.02        53.79        70.52 
TCGA-B0-5080 TCGA-B0-5083 TCGA-B0-5092 TCGA-B0-5095 TCGA-B0-5098 TCGA-B0-5108 
        7.30        15.29        15.09         8.05        52.08         5.33 
TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5692 TCGA-B0-5697 TCGA-B0-5702 TCGA-B0-5709 
       19.27        22.26        48.89        37.32        38.07        77.49 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5835 TCGA-B8-4621 
        7.04        10.36         8.48         5.52         0.53         7.07 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4177 
        0.72         0.13         0.76         6.48         0.49        54.90 
TCGA-BP-4760 TCGA-BP-4770 TCGA-BP-4782 TCGA-BP-4795 TCGA-BP-5170 TCGA-BP-5175 
       73.94        10.82        11.64        20.38        79.27        30.64 
TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4869 
       38.30        13.35        31.76        24.59        33.47        83.97 
TCGA-CJ-4882 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-5672 TCGA-CJ-5686 TCGA-CJ-6031 
       61.91        45.11         3.02        72.00        67.00        62.63 
TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4863 TCGA-CZ-4865 TCGA-CZ-5452 
       66.28         1.35        18.74        55.56         5.42        51.16 
TCGA-CZ-5458 TCGA-CZ-5462 TCGA-DV-5568 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       51.22        10.22        12.16        23.77        23.90         3.88 

subtype1 subtype2 subtype3 
    0.16     0.10     0.13 
subtype1 subtype2 subtype3 
   84.66   109.64   109.91 
subtype1 subtype2 subtype3 
   28.65    31.46    21.32 
[1] "0.2 - 84.7 (28.6)"  "0.1 - 109.6 (31.5)" "0.1 - 109.9 (21.3)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 21 76
  subtype2 52 68
  subtype3 23 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   76
  subtype2   52   68
  subtype3   23   43
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       52       23
  MALE         76       68       43
D4V4, continuous
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1 43  5
  subtype2 54  1
  subtype3 30  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43    5
  subtype2   54    1
  subtype3   30    3
   clus
vv  subtype1 subtype2 subtype3
  0       43       54       30
  1        5        1        3
D4V7, binary
          cls
clus         0   1
  subtype1  66  31
  subtype2 109  11
  subtype3  57   9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   66   31
  subtype2  109   11
  subtype3   57    9
    clus
vv   subtype1 subtype2 subtype3
  M0       66      109       57
  M1       31       11        9
D4V8, multiclass

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1  83  75
  subtype2 121  29
  subtype3  97  47
subtype1 subtype2 subtype3 
     158      150      144 
subtype1 subtype2 subtype3 
      75       29       47 
$subtype1
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3335 
       36.82         0.53        24.16        49.02        37.15        21.83 
TCGA-A3-3336 TCGA-A3-3347 TCGA-A3-3363 TCGA-A3-3378 TCGA-A3-3385 TCGA-A3-3387 
       34.29        36.07        10.49        20.71        23.87        20.25 
TCGA-AK-3434 TCGA-AK-3436 TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       68.58        67.17         3.22         1.41         4.57         3.48 
TCGA-B0-4696 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4706 
       28.47         1.38         3.58        65.06         5.98         0.85 
TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4811 
       19.69        43.96         6.61         7.04         8.75        39.32 
TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4818 TCGA-B0-4819 
        0.59         1.55        49.02        35.54        14.01         6.02 
TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4842 
       36.53        29.06        10.09        23.93        53.85        53.79 
TCGA-B0-4844 TCGA-B0-4845 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 
       10.29        65.26        26.04        29.00        19.99         7.66 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5098 TCGA-B0-5107 
        7.27        25.28        15.09        10.95        52.08        30.48 
TCGA-B0-5121 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5707 
        6.12        31.04        37.32        79.73        41.95        85.22 
TCGA-B0-5709 TCGA-B2-3923 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5838 
       77.49         5.85         5.52         0.23         0.53         5.46 
TCGA-B8-4143 TCGA-B8-4153 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5164 TCGA-B8-5546 
       23.31        13.28         5.95         2.96         0.76         0.46 
TCGA-B8-5550 TCGA-BP-4161 TCGA-BP-4164 TCGA-BP-4173 TCGA-BP-4325 TCGA-BP-4326 
        6.48        90.28        32.61        62.24        97.45        53.39 
TCGA-BP-4329 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4346 TCGA-BP-4352 
       27.78        90.28        74.17        62.86        49.08        11.31 
TCGA-BP-4354 TCGA-BP-4756 TCGA-BP-4761 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4776 
       33.99        12.30         5.98        10.82         5.29        13.48 
TCGA-BP-4798 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4983 
       10.98        60.30         6.71        14.93        36.07        46.42 
TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5169 
       31.27        16.44        18.51        38.70        37.02         6.31 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5185 TCGA-BP-5190 TCGA-BP-5191 
       30.64        62.86        62.20        37.22        33.21        31.76 
TCGA-BP-5195 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4869 
       24.59        31.27        46.55        14.17        65.69        83.97 
TCGA-CJ-4873 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4887 TCGA-CJ-4888 
       74.24        77.36        64.27        66.18        21.34        51.48 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-5672 
       26.89        39.45        54.44        38.56         4.57        72.00 
TCGA-CJ-5675 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 
       79.86        25.71        18.84        22.29        25.25        61.91 
TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CW-5580 TCGA-CW-5588 
       67.00         0.20        60.99        53.42        64.57        66.28 
TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4853 TCGA-CZ-4854 TCGA-CZ-4857 
       74.63         1.35        18.74        25.45        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5456 
       63.88        58.75        55.56        58.13        51.16        51.22 
TCGA-CZ-5460 TCGA-CZ-5464 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 
       47.01        49.05         1.94        31.07        49.02        53.56 
TCGA-CZ-5987 TCGA-EU-5907 
       14.30         4.14 

$subtype2
TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3323 TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 
       39.12        49.58        36.33        37.38        23.21        48.82 
TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       45.53        29.92        18.44        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 TCGA-AK-3444 TCGA-B0-4693 TCGA-B0-4824 
       24.16        18.64        28.31        48.36         2.53        48.10 
TCGA-B0-4846 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5077 TCGA-B0-5088 TCGA-B0-5099 
       39.42         2.27        35.47        42.44        14.24        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5119 
       90.84        90.44        18.41         2.96         3.39         1.58 
TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 TCGA-B0-5692 TCGA-B0-5693 
        6.25         0.33        71.67        91.43        48.89        60.89 
TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5698 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 
       15.42        34.26        71.70       109.64        31.46        83.93 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 
       80.15        61.28        76.41         3.62         2.96         0.49 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5843 
        7.04        10.36         6.28         9.57         5.75         0.36 
TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4330 
        4.37         0.26         7.20         0.46       111.02        62.07 
TCGA-BP-4331 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4768 
       80.65        44.94        31.86        76.41        73.94        13.15 
TCGA-BP-4774 TCGA-BP-4781 TCGA-BP-4797 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4961 
       61.94        68.38        36.39         6.67        87.45        63.62 
TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4982 
       61.51        57.37        45.50        47.11        53.65        33.30 
TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5006 
       25.81        36.95        34.32        45.07        41.62        27.62 
TCGA-BP-5007 TCGA-BP-5009 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 
       37.48        35.90        48.10         1.78        74.20        52.27 
TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5189 TCGA-BP-5192 
       49.15        36.23        37.25        22.78        27.02        23.47 
TCGA-BP-5199 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4874 
       44.52         0.95        59.84        49.22        79.63        75.06 
TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4903 
       71.87        32.65        24.62        27.65        59.44        51.25 
TCGA-CJ-4904 TCGA-CJ-4907 TCGA-CJ-4916 TCGA-CJ-4923 TCGA-CJ-5676 TCGA-CJ-5683 
       58.92        49.25        45.11        18.81        84.66        62.10 
TCGA-CJ-6030 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 
       75.55        83.77        92.02        81.83         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-6088 TCGA-CW-6093 TCGA-CW-6096 
       73.18        78.15        35.34        75.98        79.89        69.93 
TCGA-CZ-4862 TCGA-CZ-4864 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5457 
       60.59        93.04        54.84         0.82        18.44        50.86 
TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5461 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5466 
       51.22        49.81        10.85        21.76        45.27        22.52 
TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 
        2.40        67.13        12.26        52.57        43.69        45.96 
TCGA-DV-5568 TCGA-DV-5573 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 TCGA-EU-5906 
       12.16        37.15        33.04        23.90         3.88         6.77 

$subtype3
TCGA-A3-3316 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3362 
       49.08        48.56        38.99         4.50        46.85        51.25 
TCGA-A3-3373 TCGA-A3-3374 TCGA-A3-3376 TCGA-A3-3382 TCGA-AK-3427 TCGA-AK-3428 
       10.98        43.17        35.18        18.87        84.36        73.08 
TCGA-AK-3451 TCGA-AK-3456 TCGA-B0-4697 TCGA-B0-4701 TCGA-B0-4710 TCGA-B0-4714 
       48.69         1.51        18.97         6.84         0.16         0.10 
TCGA-B0-4817 TCGA-B0-4821 TCGA-B0-4823 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 
       27.88        40.41        14.93        78.41        68.71        40.70 
TCGA-B0-4837 TCGA-B0-4841 TCGA-B0-4843 TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5095 
       42.48         4.57        10.52        70.52         7.30         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5108 TCGA-B0-5109 
        2.20         4.96        62.89        52.50         5.33        19.27 
TCGA-B0-5113 TCGA-B0-5120 TCGA-B0-5400 TCGA-B0-5700 TCGA-B0-5702 TCGA-B0-5703 
        0.72         1.81        22.26        12.33        38.07         8.61 
TCGA-B0-5706 TCGA-B2-3924 TCGA-B2-4098 TCGA-B2-5636 TCGA-B4-5834 TCGA-B4-5836 
       79.36         6.38         1.64         8.48         1.25         4.64 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5162 TCGA-B8-5163 
        0.23        16.80         7.43         7.07         0.72         0.13 
TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5551 TCGA-BP-4165 TCGA-BP-4169 TCGA-BP-4170 
        8.15         6.38         0.49        96.85        23.05        77.03 
TCGA-BP-4174 TCGA-BP-4327 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 
       61.78         3.55        37.25        21.21        15.12         0.07 
TCGA-BP-4341 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4349 TCGA-BP-4353 TCGA-BP-4355 
       52.24        54.77        49.84        12.23        12.33        31.33 
TCGA-BP-4758 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4769 
       72.59        44.15        41.75        71.80        48.03        61.68 
TCGA-BP-4775 TCGA-BP-4777 TCGA-BP-4784 TCGA-BP-4787 TCGA-BP-4789 TCGA-BP-4790 
       60.56        56.91        60.95        15.75        48.95        36.53 
TCGA-BP-4799 TCGA-BP-4801 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4960 TCGA-BP-4962 
       37.25        36.95        47.97         6.94        71.41        58.68 
TCGA-BP-4964 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4974 
       61.22        58.98        14.20        48.89        49.35         7.23 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5008 
       27.19         3.85         5.79        42.97        30.61        35.21 
TCGA-BP-5010 TCGA-BP-5170 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5194 
       28.83        79.27         9.63        38.30        13.35        13.41 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5200 TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4872 
       33.47        19.82        28.96        53.16        21.21        47.18 
TCGA-CJ-4882 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4892 
       61.91        69.86        64.14        63.95        68.55        49.97 
TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4908 
       50.20        41.88        47.67        49.94        49.15        50.30 
TCGA-CJ-4918 TCGA-CJ-5671 TCGA-CJ-5681 TCGA-CJ-5684 TCGA-CJ-6031 TCGA-CJ-6033 
        3.02        63.85        18.12        73.32        62.63         7.36 
TCGA-CW-6090 TCGA-CZ-4856 TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-4865 TCGA-CZ-5454 
       75.88         0.59         6.74        14.63         5.42        23.74 
TCGA-CZ-5462 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5574 TCGA-EU-5904 
       10.22        22.78        29.88        11.67        23.77        18.08 

subtype1 subtype2 subtype3 
    0.20     0.26     0.07 
subtype1 subtype2 subtype3 
   97.45   111.02    96.85 
subtype1 subtype2 subtype3 
  30.560   38.300   30.245 
[1] "0.2 - 97.5 (30.6)"  "0.3 - 111.0 (38.3)" "0.1 - 96.8 (30.2)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[361] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[451] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[361] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[451] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[217] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[343] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[361] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[451] "subtype2" "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus         0   1
  subtype1  45 115
  subtype2  55  95
  subtype3  51  93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45  115
  subtype2   55   95
  subtype3   51   93
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       45       55       51
  MALE        115       95       93
D5V4, continuous
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 77 10
  subtype2 60  2
  subtype3 71  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   77   10
  subtype2   60    2
  subtype3   71    4
   clus
vv  subtype1 subtype2 subtype3
  0       77       60       71
  1       10        2        4
D5V7, binary
          cls
clus         0   1
  subtype1 116  44
  subtype2 139  11
  subtype3 125  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  116   44
  subtype2  139   11
  subtype3  125   19
    clus
vv   subtype1 subtype2 subtype3
  M0      116      139      125
  M1       44       11       19
D5V8, multiclass

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1  89  43
  subtype2 162  53
  subtype3  50  55
subtype1 subtype2 subtype3 
     132      215      105 
subtype1 subtype2 subtype3 
      43       53       55 
$subtype1
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3326 
       36.82        39.12        49.02        37.15        36.33        37.38 
TCGA-A3-3336 TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3372 
       34.29        36.07        29.92        18.44        34.65        24.16 
TCGA-A3-3383 TCGA-A3-3385 TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4811 TCGA-B0-4816 
       28.31        23.87         4.57         2.53        39.32        35.54 
TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 
       14.01        48.10        23.93        53.85        65.26        39.42 
TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5085 
       26.04         2.27        35.47        19.99         7.66        25.28 
TCGA-B0-5092 TCGA-B0-5102 TCGA-B0-5116 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 
       15.09        90.84         3.39         6.25         0.33        71.67 
TCGA-B0-5692 TCGA-B0-5694 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 
       48.89        15.42        37.32        71.70        79.73        41.95 
TCGA-B0-5705 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 
      109.64        61.28        76.41         2.96         0.49        10.36 
TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
        6.28         9.57         0.23         0.53         0.36        23.31 
TCGA-B8-4153 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5550 TCGA-BP-4158 TCGA-BP-4161 
       13.28         4.37         0.76         6.48       111.02        90.28 
TCGA-BP-4164 TCGA-BP-4173 TCGA-BP-4325 TCGA-BP-4343 TCGA-BP-4346 TCGA-BP-4351 
       32.61        62.24        97.45        62.86        49.08        31.86 
TCGA-BP-4776 TCGA-BP-4963 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4977 TCGA-BP-4981 
       13.48        60.30        57.37        45.50        14.93        36.07 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5185 
       46.42        31.27        16.44        18.51        38.70        37.22 
TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5195 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4640 
       27.02        33.21        24.59        31.27        46.55        65.69 
TCGA-CJ-4869 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4881 
       83.97        74.24        75.06        77.36        64.27        66.18 
TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4897 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4916 
       32.65        21.34        59.44        49.25        54.44        45.11 
TCGA-CJ-5672 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5683 TCGA-CJ-6027 
       72.00        25.71        18.84        22.29        62.10        60.99 
TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 
       75.55        64.57        92.02         5.39        85.78        73.18 
TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 
       74.63         1.35        18.74        25.45        60.59        55.56 
TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5455 TCGA-CZ-5456 
       93.04        58.13        54.84        51.16        18.44        51.22 
TCGA-CZ-5458 TCGA-CZ-5464 TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 
       51.22        49.05        22.52         2.40         1.94        31.07 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-EU-5906 
       49.02        53.56        12.26        52.57        43.69         6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3329 
        0.53        49.08        49.58        48.56        38.99        23.21 
TCGA-A3-3331 TCGA-A3-3349 TCGA-A3-3357 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3370 
       48.82        45.53        46.85        51.25        28.67        25.51 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3444 
       10.98        35.18        18.64        18.87        20.25        48.36 
TCGA-AK-3451 TCGA-B0-4697 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4710 TCGA-B0-4712 
       48.69        18.97         6.84         5.98         0.16        43.96 
TCGA-B0-4819 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 
        6.02        36.53        14.93        40.70        42.48        10.52 
TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5096 
       70.52        42.44         7.30        14.24         8.05         2.20 
TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5108 TCGA-B0-5110 
        4.96        15.95        62.89        52.50         5.33        18.41 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5120 TCGA-B0-5121 TCGA-B0-5693 TCGA-B0-5702 
        0.72         2.96         1.81         6.12        60.89        38.07 
TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B2-3924 TCGA-B2-4098 
       79.36        31.46        83.93        80.15         6.38         1.64 
TCGA-B2-4099 TCGA-B2-5633 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5378 TCGA-B4-5834 
        3.62         7.04         8.48         5.52         5.75         1.25 
TCGA-B8-4146 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5549 
       16.80         0.72         0.13         0.26         8.15         6.38 
TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4165 TCGA-BP-4169 TCGA-BP-4170 
        0.49         7.20         0.46        96.85        23.05        77.03 
TCGA-BP-4174 TCGA-BP-4326 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4337 
       61.78        53.39        62.07        80.65        37.25         0.07 
TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4344 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4353 
       52.24        74.17        54.77        44.94        12.23        12.33 
TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 
       31.33        72.59        76.41        73.94        44.15        41.75 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4769 TCGA-BP-4774 TCGA-BP-4775 
       71.80        48.03        13.15        61.68        61.94        60.56 
TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4784 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4797 
       56.91        68.38        60.95        48.95        36.53        36.39 
TCGA-BP-4799 TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 
       37.25        36.95         6.67        47.97         6.94        87.45 
TCGA-BP-4961 TCGA-BP-4962 TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4970 TCGA-BP-4971 
       63.62        58.68        61.22        61.51        14.20        48.89 
TCGA-BP-4972 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 
       49.35         7.23        47.11        53.65        33.30        25.81 
TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 
       36.95        34.32         5.79        45.07        30.61        41.62 
TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 
       27.62        37.48        35.21        35.90        28.83        48.10 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5182 
        1.78        74.20        52.27         9.63        49.15        38.30 
TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5191 TCGA-BP-5192 
       36.23        37.25        22.78        13.35        31.76        23.47 
TCGA-BP-5194 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 
       13.41        33.47        19.82        44.52        28.96         0.95 
TCGA-CJ-4634 TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 
       59.84        53.16        21.21        49.22        79.63        47.18 
TCGA-CJ-4878 TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4893 
       71.87        61.91        64.14        63.95        68.55        24.62 
TCGA-CJ-4894 TCGA-CJ-4895 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
       27.65        39.45        50.20        41.88        47.67        49.94 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 
       51.25        58.92        49.15        50.30         3.02         4.57 
TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5684 
       18.81        63.85        84.66        18.12        61.91        73.32 
TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6032 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-5589 
       67.00         0.20        83.77        81.83        66.28        78.15 
TCGA-CW-5590 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CW-6096 TCGA-CZ-4856 
       35.34        75.98        75.88        79.89        69.93         0.59 
TCGA-CZ-4859 TCGA-CZ-4860 TCGA-CZ-4865 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5457 
       58.75         6.74         5.42         0.82        23.74        50.86 
TCGA-CZ-5459 TCGA-CZ-5461 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5988 
       49.81        10.85        21.76        45.27        67.13        22.78 
TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 
       45.96        29.88        12.16        11.67        37.15        23.77 
TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5907 
       33.04        23.90        18.08         3.88         4.14 

$subtype3
TCGA-A3-3313 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       24.16        21.83         4.50        10.49        43.17        20.71 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3456 TCGA-B0-4688 
       84.36        73.08        68.58        67.17         1.51         3.22 
TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 
        1.41         3.48        28.47         1.38         3.58        65.06 
TCGA-B0-4706 TCGA-B0-4707 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
        0.85        19.69         6.61         0.10         7.04         8.75 
TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4821 TCGA-B0-4827 
        0.59         1.55        49.02        27.88        40.41        29.06 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4844 
       10.09        78.41        68.71         4.57        53.79        10.29 
TCGA-B0-4848 TCGA-B0-5084 TCGA-B0-5094 TCGA-B0-5098 TCGA-B0-5104 TCGA-B0-5107 
       29.00         7.27        10.95        52.08        90.44        30.48 
TCGA-B0-5109 TCGA-B0-5119 TCGA-B0-5400 TCGA-B0-5691 TCGA-B0-5695 TCGA-B0-5696 
       19.27         1.58        22.26        91.43        34.26        31.04 
TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5707 TCGA-B0-5709 TCGA-B2-3923 TCGA-B4-5836 
       12.33         8.61        85.22        77.49         5.85         4.64 
TCGA-B4-5838 TCGA-B4-5844 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 
        5.46         0.23         7.43         7.07         5.95         2.96 
TCGA-B8-5546 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4338 
        0.46         3.55        27.78        21.21        15.12        90.28 
TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 TCGA-BP-4761 TCGA-BP-4770 
       49.84        11.31        33.99        12.30         5.98        10.82 
TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 TCGA-BP-4960 TCGA-BP-4967 TCGA-BP-4969 
        5.29        15.75        10.98        71.41         6.71        58.98 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5004 TCGA-BP-5169 TCGA-BP-5170 
       27.19         3.85        42.97        37.02         6.31        79.27 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-CJ-4638 TCGA-CJ-4885 TCGA-CJ-4888 
       30.64        62.86        62.20        14.17        69.86        51.48 
TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4913 TCGA-CJ-5675 TCGA-CJ-5680 TCGA-CJ-6028 
       26.89        49.97        38.56        79.86        25.25        53.42 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4861 
       62.63         7.36        46.16        47.08        63.88        14.63 
TCGA-CZ-5460 TCGA-CZ-5462 TCGA-CZ-5987 
       47.01        10.22        14.30 

subtype1 subtype2 subtype3 
    0.23     0.07     0.10 
subtype1 subtype2 subtype3 
  111.02    96.85    91.43 
subtype1 subtype2 subtype3 
  36.575   36.950   21.210 
[1] "0.2 - 111.0 (36.6)" "0.1 - 96.8 (37.0)"  "0.1 - 91.4 (21.2)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[361] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[379] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[385] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[439] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype1" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus         0   1
  subtype1  39  93
  subtype2  79 136
  subtype3  33  74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   93
  subtype2   79  136
  subtype3   33   74
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       79       33
  MALE         93      136       74
D6V4, continuous
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 66  4
  subtype2 82  4
  subtype3 60  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   66    4
  subtype2   82    4
  subtype3   60    8
   clus
vv  subtype1 subtype2 subtype3
  0       66       82       60
  1        4        4        8
D6V7, binary
          cls
clus         0   1
  subtype1 113  19
  subtype2 191  24
  subtype3  76  31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  113   19
  subtype2  191   24
  subtype3   76   31
    clus
vv   subtype1 subtype2 subtype3
  M0      113      191       76
  M1       19       24       31
D6V8, multiclass

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 155  44
  subtype2  96  83
  subtype3  72  28
subtype1 subtype2 subtype3 
     199      179      100 
subtype1 subtype2 subtype3 
      44       83       28 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3352 
       37.38        23.21        48.82        31.04        29.92        18.44 
TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 
       42.97        42.28        34.65        25.51        24.16        10.98 
TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 
       18.64        23.87        66.31        68.58        48.36        49.28 
TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 
       28.70        22.45        38.40        31.27         2.53         6.84 
TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        0.10         1.55        14.01        48.10        10.09        78.41 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       23.93        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 
       35.47        70.52        42.44        25.28        14.24        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 
       90.84        90.44        18.41         0.72         2.96         1.58 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
        6.12         6.25         0.33        71.67        48.89        60.89 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       34.26        31.04        71.70        79.73        12.33         8.61 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      109.64        31.46        83.93        80.15        61.28         6.38 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 
        3.62         2.96         0.49        10.36         6.28         9.57 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 
        1.25         4.64         0.36         0.23        16.80        12.46 
TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 
        9.17        13.28         8.38         5.95         4.37         0.76 
TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4164 
        6.38         0.46       111.02        94.72       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 TCGA-BP-4335 
       96.85        77.03        97.45         3.55        62.07        15.12 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4756 
       18.48        52.24        49.08        44.94        12.23        12.30 
TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 
       72.59        71.80        48.03        13.15        61.94        60.56 
TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4807 TCGA-BP-4961 TCGA-BP-4964 TCGA-BP-4965 
       56.91        11.64         6.94        63.62        61.22        61.51 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       57.37        58.98        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4999 
       36.07        33.30        36.95        34.32         5.79        41.62 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 
       38.70        37.02        27.62        37.48        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 
       74.20        52.27        49.15        36.23        37.25        22.78 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 
       33.21        23.47        13.41        28.96        31.27         0.95 
TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 
       59.84        75.88        58.92        11.05        75.06        77.36 
TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 
       64.27        71.87        69.86        64.14        21.34        49.97 
TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4908 
       24.62        27.65        59.44        51.25        58.92        50.30 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5580 
       45.11        72.00        79.86        73.32        83.77        64.57 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 
       92.02         5.39        85.78        73.18        75.98        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 
       25.45         0.59        58.75        55.56        93.04         0.82 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 
       18.44        50.86        51.22        47.01        21.76        45.27 
TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5575 TCGA-EU-5904 
       67.13        12.26        52.57        45.96        33.04        18.08 
TCGA-EU-5906 
        6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 
        0.53        39.12        49.08        37.15        36.33        21.83 
TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3426 
       36.07        46.85        20.71        18.87        20.25        29.06 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       67.17        42.05        48.69         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       18.97         1.38        65.06        19.69        43.96         6.61 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        7.04         8.75         0.59        49.02        35.54        27.88 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
        6.02        40.41        29.06        40.70        42.48        53.79 
TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5084 
       10.52        10.29        29.00        19.99         7.66         7.27 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20         4.96        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5694 
       52.50        30.48         5.33         3.39        22.26        15.42 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B2-4098 TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 
       41.95        79.36         1.64         7.04         5.52         0.23 
TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 
        0.53        23.31         7.43         7.07         2.96         0.72 
TCGA-B8-5163 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4167 TCGA-BP-4173 
        0.13         6.48         0.49        90.28        89.36        62.24 
TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 
       61.78        64.27        53.39        90.28        74.17        62.86 
TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 
       31.86        11.31        12.33        33.99         5.98         5.29 
TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 
       68.38        15.75        36.39        10.98        37.25         6.67 
TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 
       47.97        87.45        71.41        58.68        60.30         6.71 
TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
       48.89        14.93        46.42        31.27        25.81        27.19 
TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 
        3.85        16.44        18.51        35.90        28.83         6.31 
TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 
       79.27        30.64        62.86        62.20        27.02        31.76 
TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       24.59        33.47        19.82        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        21.21        83.97        79.63 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 
       47.18        74.24        66.18        61.91        32.65        51.48 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
       68.55        26.89        39.45        41.88        47.67        49.94 
TCGA-CJ-4912 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
       54.44         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       18.84        22.29        67.00        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 
       62.63         7.36        66.28        35.34         1.35        75.88 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
       18.74        46.16        47.08        63.88         6.74        14.63 
TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5456 
       60.59         5.42        58.13        51.16        23.74        51.22 
TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 
       10.85        10.22        49.05         1.94        31.07        49.02 
TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-DV-5568 TCGA-EU-5905 
       53.56        14.30        22.78        12.16         3.88 

$subtype3
TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3328 TCGA-A3-3349 TCGA-A3-3362 TCGA-A3-3363 
       24.16        49.02        25.81        45.53        51.25        10.49 
TCGA-A3-3365 TCGA-A3-3374 TCGA-A3-3376 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3431 
       28.67        43.17        35.18        84.36        73.08        60.92 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3461 
       72.07        57.34        46.78        39.12         1.51        28.04 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4703 
       12.13         1.32         3.22        28.47         3.58         5.98 
TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-5080 
        0.85        39.32        14.93        68.71         4.57         7.30 
TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5697 
       15.29        62.89        19.27         1.81        91.43        37.32 
TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 
       77.49        76.41         5.85         8.48         5.75         5.46 
TCGA-B8-4619 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4159 
        0.62         0.26         8.15         0.46         7.20        85.48 
TCGA-BP-4163 TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4329 TCGA-BP-4332 
       93.34         0.43        23.05        54.90        27.78        37.25 
TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4355 TCGA-BP-4759 
       21.21         0.07        54.77        49.84        31.33        76.41 
TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 
       73.94        44.15        41.75        61.68        10.82        60.95 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 TCGA-BP-4972 
       48.95        36.53        20.38        36.95        14.20        49.35 
TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5177 TCGA-BP-5182 
       42.97        45.07        30.61        35.21         9.63        38.30 
TCGA-BP-5187 TCGA-BP-5199 TCGA-CJ-4889 TCGA-CJ-4899 TCGA-CJ-4905 TCGA-CJ-4907 
       13.35        44.52        63.95        50.20        49.15        49.25 
TCGA-CJ-4918 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5689 
        3.02        25.25        18.12        61.91        62.10         0.20 
TCGA-CW-5583 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 TCGA-DV-5567 
       81.83        78.15        74.63         2.40        43.69        29.88 
TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       11.67        37.15        23.77        23.90 

subtype1 subtype2 subtype3 
    0.10     0.13     0.07 
subtype1 subtype2 subtype3 
  111.02    90.28    93.34 
subtype1 subtype2 subtype3 
  36.950   30.640   35.195 
[1] "0.1 - 111.0 (37.0)" "0.1 - 90.3 (30.6)"  "0.1 - 93.3 (35.2)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[289] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[301] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[319] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[337] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[343] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[475] "subtype3" "subtype1" "subtype2" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus         0   1
  subtype1  90 109
  subtype2  45 135
  subtype3  32  69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90  109
  subtype2   45  135
  subtype3   32   69
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       90       45       32
  MALE        109      135       69
D7V4, continuous
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 96  2
  subtype2 85 12
  subtype3 47  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   96    2
  subtype2   85   12
  subtype3   47    3
   clus
vv  subtype1 subtype2 subtype3
  0       96       85       47
  1        2       12        3
D7V7, binary
          cls
clus         0   1
  subtype1 176  23
  subtype2 136  44
  subtype3  91  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  176   23
  subtype2  136   44
  subtype3   91   10
    clus
vv   subtype1 subtype2 subtype3
  M0      176      136       91
  M1       23       44       10
D7V8, multiclass

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  58  14
  subtype2 166  48
  subtype3  99  93
subtype1 subtype2 subtype3 
      72      214      192 
subtype1 subtype2 subtype3 
      14       48       93 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 
       24.16        25.81        51.25        10.49        43.17        84.36 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 
       72.07        57.34        46.78        39.12         1.51        12.13 
TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-5083 TCGA-B0-5100 
        1.32         3.58        14.93        68.71        15.29        62.89 
TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5695 TCGA-B0-5697 TCGA-B0-5700 TCGA-B0-5812 
        1.81        91.43        34.26        37.32        12.33        76.41 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5636 TCGA-B2-5639 TCGA-B4-5378 TCGA-B4-5835 
        5.85         1.64         8.48         6.28         5.75         0.53 
TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4166 
        0.62         7.07         0.26         0.46         7.20         0.43 
TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4756 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4769 
       54.90        21.21        12.30        73.94        44.15        61.68 
TCGA-BP-4784 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4970 
       60.95        36.53        20.38        36.95         6.94        14.20 
TCGA-BP-4972 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-5008 TCGA-BP-5182 TCGA-BP-5187 
       49.35        42.97        45.07        35.21        38.30        13.35 
TCGA-CJ-4889 TCGA-CJ-4907 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5689 
       63.95        49.25        18.12        62.10        73.32         0.20 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 
       92.02         5.39        78.15        74.63         2.40        43.69 
TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       45.96        29.88        11.67        37.15        23.77        23.90 

$subtype2
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       18.44        42.97        42.28        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3428 
       24.16        10.98        35.18        18.64        23.87        73.08 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.58        48.36        49.28        28.70        22.45 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27        28.04         2.53         6.84         0.85 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4811 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 
        0.10         7.04        39.32         1.55        14.01        48.10 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 
       10.09        78.41        23.93        53.85         4.57        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 
       39.42        26.04         2.27        35.47        70.52        42.44 
TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5110 
       25.28        15.95        90.84        90.44        52.50        18.41 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 
        0.72         2.96         1.58         6.12         6.25        71.67 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 
       48.89        60.89        31.04        71.70        79.73         8.61 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      109.64        31.46        83.93        80.15        61.28         6.38 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B4-5377 TCGA-B4-5834 
        3.62         2.96         0.49        10.36         9.57         1.25 
TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        4.64         0.36         0.23        16.80        12.46         9.17 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5553 
       13.28         8.38         5.95         4.37         0.76         0.46 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
      111.02        85.48        94.72        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 
       96.85        77.03        62.24        61.78        97.45         3.55 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.12        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 
       49.08        44.94        12.23        31.86        31.33        72.59 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       71.80        48.03        13.15        61.94        60.56        56.91 
TCGA-BP-4789 TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 
       48.95        63.62        60.30        61.51        57.37        58.98 
TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 
       45.50         7.23        47.11        53.65        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
       33.30        36.95         3.85        34.32        16.44         5.79 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
       41.62        18.51        38.70        37.02        27.62        37.48 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 
       48.10         1.78        52.27         9.63        49.15        36.23 
TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 
       37.25        22.78        33.21        23.47        13.41        28.96 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4643 
       31.27         0.95        59.84        75.88        65.69        58.92 
TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 
       11.05        75.06        77.36        64.27        71.87        69.86 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       64.14        21.34        49.97        24.62        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4916 
       50.20        51.25        58.92        49.15        50.30        45.11 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5583 
       72.00        79.86        18.84        67.00        83.77        81.83 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 
       85.78        73.18        75.98        79.89        25.45         0.59 
TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5457 
       58.75        55.56        93.04         0.82        18.44        50.86 
TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 
       47.01        21.76        45.27        67.13        12.26        52.57 
TCGA-DV-5568 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       12.16        33.04        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 
       21.83        36.07        46.85        20.71        18.87        20.25 
TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4688 
       29.06        60.92        67.17        42.05        48.69         3.22 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
        1.41         4.57         3.48        28.47        18.97         1.38 
TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 
       65.06         5.98        19.69        43.96         6.61         8.75 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 
        0.59        49.02        35.54        27.88         6.02        40.41 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
       29.06        40.70        42.48        53.79        10.52        10.29 
TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 
       29.00        19.99         7.30         7.66         7.27        14.24 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20         4.96        52.08 
TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5402 
       30.48         5.33        19.27         3.39        22.26         0.33 
TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5641 
       15.42        41.95        79.36        77.49         7.04         5.52 
TCGA-B4-5832 TCGA-B4-5838 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5162 
        0.23         5.46        23.31         7.43         2.96         0.72 
TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4163 
        0.13         8.15         6.38         6.48         0.49        93.34 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4329 TCGA-BP-4337 
       89.36        23.05        64.27        53.39        27.78         0.07 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4353 
       90.28        74.17        62.86        49.84        11.31        12.33 
TCGA-BP-4354 TCGA-BP-4759 TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4770 TCGA-BP-4771 
       33.99        76.41         5.98        41.75        10.82         5.29 
TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
       68.38        11.64        15.75        36.39        10.98        37.25 
TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4964 
        6.67        47.97        87.45        71.41        58.68        61.22 
TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
        6.71        48.89        46.42        31.27        25.81        27.19 
TCGA-BP-4998 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5174 
       30.61        35.90        28.83         6.31        79.27        74.20 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 
       30.64        62.86        62.20        27.02        31.76        24.59 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       33.47        19.82        44.52        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4872 
       14.17        54.61        21.21        83.97        79.63        47.18 
TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 TCGA-CJ-4890 
       74.24        66.18        61.91        32.65        51.48        68.55 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4912 
       26.89        39.45        41.88        47.67        49.94        54.44 
TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
        3.02         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       22.29        25.25        61.91        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 
       62.63         7.36        64.57        66.28        35.34         1.35 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       75.88        18.74        46.16        47.08        63.88         6.74 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 
       14.63        60.59         5.42        58.13        51.16        23.74 
TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 
       51.22        51.22        10.85        10.22        49.05         1.94 
TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-EU-5905 
       31.07        49.02        53.56        14.30        22.78         3.88 

subtype1 subtype2 subtype3 
    0.20     0.10     0.07 
subtype1 subtype2 subtype3 
   92.02   111.02    93.34 
subtype1 subtype2 subtype3 
  27.845   37.250   30.545 
[1] "0.2 - 92.0 (27.8)"  "0.1 - 111.0 (37.2)" "0.1 - 93.3 (30.5)" 
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[301] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[343] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[391] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[409] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[433] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[475] "subtype1" "subtype2" "subtype3" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  23  50
  subtype2  92 123
  subtype3  52 140
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   50
  subtype2   92  123
  subtype3   52  140
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       92       52
  MALE         50      123      140
D8V4, continuous
D8V5, multiclass
D8V6, binary
          cls
clus         0   1
  subtype1  32   2
  subtype2 104   1
  subtype3  92  14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32    2
  subtype2  104    1
  subtype3   92   14
   clus
vv  subtype1 subtype2 subtype3
  0       32      104       92
  1        2        1       14
D8V7, binary
          cls
clus         0   1
  subtype1  70   3
  subtype2 191  24
  subtype3 142  50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70    3
  subtype2  191   24
  subtype3  142   50
    clus
vv   subtype1 subtype2 subtype3
  M0       70      191      142
  M1        3       24       50
D8V8, multiclass

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 162  47
  subtype2  76  30
  subtype3  85  78
subtype1 subtype2 subtype3 
     209      106      163 
subtype1 subtype2 subtype3 
      47       30       78 
$subtype1
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
       47.21        39.12        49.58        48.56        36.33        38.99 
TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3351 TCGA-A3-3358 TCGA-A3-3362 TCGA-A3-3367 
       37.38        48.82        29.92        42.97        51.25        34.65 
TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 
       25.51        24.16        18.64        28.31        23.87        73.08 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.58        48.36        49.28        28.70        22.45 
TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4714 
       31.27         2.53         6.84         0.85         0.16         0.10 
TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 
        1.55        14.01        48.10        10.09        78.41        23.93 
TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       53.85         4.57        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 
       35.47        42.44        25.28        15.95        90.84        90.44 
TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5119 TCGA-B0-5121 
       18.41         0.72         2.96         3.39         1.58         6.12 
TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 
        6.25         0.33        71.67        48.89        60.89        15.42 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       34.26        31.04        71.70        79.73        12.33         8.61 
TCGA-B0-5705 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
      109.64        83.93        80.15        61.28         6.38         3.62 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 
        2.96         0.49         7.04        10.36         6.28         9.57 
TCGA-B4-5834 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        1.25         0.36         0.23        16.80        12.46         9.17 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 
       13.28         8.38         5.95         4.37         0.76         0.26 
TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4162 
        0.46         6.38         0.46       111.02        85.48       101.06 
TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 
       32.61        96.85         0.43        61.78        97.45         3.55 
TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       27.78        62.07        15.12        18.48        52.24        54.77 
TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4766 
       44.94        31.86        31.33        72.59        76.41        48.03 
TCGA-BP-4768 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4801 TCGA-BP-4961 TCGA-BP-4965 
       13.15        60.56        13.48        36.95        63.62        61.51 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       57.37        58.98        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
       36.07        33.30        36.95        34.32        16.44         5.79 
TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 
       45.07        38.70        37.02        37.48        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5190 
       74.20        52.27        49.15        36.23        37.22        33.21 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5201 
       23.47        13.41        24.59        44.52        28.96        31.27 
TCGA-BP-5202 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4875 
        0.95        75.88        58.92        11.05        49.22        77.36 
TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       71.87        69.86        49.97        24.62        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5675 
       50.20        51.25        58.92        45.11         4.57        79.86 
TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5581 
       61.91        62.10        73.32        67.00        83.77        92.02 
TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6093 TCGA-CZ-4853 
        5.39        85.78        73.18        78.15        79.89        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4865 
        0.59        58.75        60.59        55.56        93.04         5.42 
TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 
       58.13        54.84        51.16         0.82        23.74        18.44 
TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5462 TCGA-CZ-5463 
       50.86        51.22        49.81        47.01        10.22        21.76 
TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 
       45.27         2.40        67.13        12.26        52.57        43.69 
TCGA-DV-5566 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 
       45.96        11.67        18.08         6.77         4.14 

$subtype2
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 
        0.53        24.16        49.08        49.02        36.07        45.53 
TCGA-A3-3365 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3431 
       28.67        10.98        35.18        20.25       109.91        60.92 
TCGA-AK-3461 TCGA-AK-3465 TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4703 
       28.04        12.13         3.22        18.97        65.06         5.98 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4823 TCGA-B0-4827 TCGA-B0-4843 TCGA-B0-4945 
       39.32        35.54        14.93        29.06        10.52        70.52 
TCGA-B0-5080 TCGA-B0-5095 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5120 TCGA-B0-5691 
        7.30         8.05        62.89         5.33         1.81        91.43 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5812 TCGA-B2-5636 TCGA-B4-5836 
       38.07        77.49        31.46        76.41         8.48         4.64 
TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 
        5.46         0.62         0.72         0.13         8.15         6.48 
TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4177 
        7.20        94.72        89.36        23.05        62.24        54.90 
TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4337 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4353 
       80.65        37.25         0.07        62.86        49.84        12.33 
TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 
       73.94        44.15        41.75        71.80        61.68        10.82 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4970 
       48.95        36.53        20.38        47.97         6.94        14.20 
TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4985 TCGA-BP-4989 TCGA-BP-5010 TCGA-BP-5170 
       48.89        49.35        31.27         3.85        28.83        79.27 
TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5196 TCGA-BP-5198 
        9.63        38.30        37.25        22.78        33.47        19.82 
TCGA-CJ-4634 TCGA-CJ-4642 TCGA-CJ-4872 TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 
       59.84        53.16        47.18        61.91        64.14        63.95 
TCGA-CJ-4890 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 
       68.55        49.94        49.15        49.25        50.30         3.02 
TCGA-CJ-5671 TCGA-CJ-5680 TCGA-CJ-5689 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 
       63.85        25.25         0.20        62.63        81.83        66.28 
TCGA-CW-6088 TCGA-CW-6090 TCGA-CZ-4860 TCGA-CZ-5988 TCGA-DV-5568 TCGA-DV-5573 
       75.98        75.88         6.74        22.78        12.16        37.15 
TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       23.77        33.04        23.90         3.88 

$subtype3
TCGA-A3-3319 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       37.15         4.50        46.85        10.49        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3430 TCGA-AK-3433 TCGA-AK-3436 
       18.87        29.06        84.36        15.78        72.07        67.17 
TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       57.34        46.78        42.05        40.01        48.69        39.12 
TCGA-AK-3456 TCGA-AK-3458 TCGA-AS-3777 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
        1.51        38.40         1.32         1.41         4.57         3.48 
TCGA-B0-4696 TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       28.47         1.38         3.58        19.69        43.96         6.61 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4819 
        7.04         8.75         0.59        49.02        27.88         6.02 
TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
       40.41        36.53        68.71        40.70        42.48        53.79 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5083 TCGA-B0-5084 
       10.29        29.00        19.99         7.66        15.29         7.27 
TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       14.24        15.09        10.95         2.20         4.96        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5701 
       52.50        30.48        19.27        22.26        37.32        41.95 
TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5641 TCGA-B4-5378 
       79.36        85.22         5.85         1.64         5.52         5.75 
TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 
        0.23         0.53        23.31         7.43         7.07         2.96 
TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4163 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4334 
        0.49        90.28        93.34        64.27        53.39        21.21 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4346 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 
       90.28        74.17        49.08        11.31        33.99        12.30 
TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 
        5.98         5.29        56.91        68.38        11.64        15.75 
TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 
       36.39        10.98        37.25         6.67        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4986 
       58.68        60.30         6.71        14.93        46.42        25.81 
TCGA-BP-4988 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5000 TCGA-BP-5008 TCGA-BP-5009 
       27.19        42.97        30.61        18.51        35.21        35.90 
TCGA-BP-5169 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5187 TCGA-BP-5189 
        6.31        30.64        62.86        62.20        13.35        27.02 
TCGA-BP-5191 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 
       31.76        46.55        63.25        73.22        14.17        65.69 
TCGA-CJ-4641 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 
       54.61        83.97        79.63        74.24        64.27        66.18 
TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 
       32.65        21.34        51.48        26.89        39.45        41.88 
TCGA-CJ-4901 TCGA-CJ-4912 TCGA-CJ-4923 TCGA-CJ-5672 TCGA-CJ-5676 TCGA-CJ-5677 
       47.67        54.44        18.81        72.00        84.66        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5681 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       18.84        22.29        18.12        60.99        53.42        75.55 
TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6097 TCGA-CZ-4854 
        7.36        64.57        35.34        74.63        18.74        46.16 
TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4861 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5464 
       47.08        63.88        14.63        51.22        10.85        49.05 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 
       22.52         1.94        31.07        49.02        53.56        14.30 
TCGA-DV-5567 
       29.88 

subtype1 subtype2 subtype3 
    0.10     0.07     0.23 
subtype1 subtype2 subtype3 
  111.02   109.91    93.34 
subtype1 subtype2 subtype3 
  36.230   35.805   31.070 
[1] "0.1 - 111.0 (36.2)" "0.1 - 109.9 (35.8)" "0.2 - 93.3 (31.1)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[355] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[421] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[433] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[439] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[355] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[421] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[433] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[439] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[289] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[355] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[421] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[433] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[439] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[445] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype2" "subtype1" "subtype1"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  88 121
  subtype2  33  73
  subtype3  42 123
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   88  121
  subtype2   33   73
  subtype3   42  123
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       88       33       42
  MALE        121       73      123
D9V4, continuous
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 95  2
  subtype2 51  3
  subtype3 76 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   95    2
  subtype2   51    3
  subtype3   76   12
   clus
vv  subtype1 subtype2 subtype3
  0       95       51       76
  1        2        3       12
D9V7, binary
          cls
clus         0   1
  subtype1 184  25
  subtype2  97   9
  subtype3 124  41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  184   25
  subtype2   97    9
  subtype3  124   41
    clus
vv   subtype1 subtype2 subtype3
  M0      184       97      124
  M1       25        9       41
D9V8, multiclass

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  34  16
  subtype2 210  70
  subtype3  79  69
subtype1 subtype2 subtype3 
      50      280      148 
subtype1 subtype2 subtype3 
      16       70       69 
$subtype1
TCGA-A3-3313 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3382 TCGA-AK-3427 TCGA-AK-3433 
       24.16        10.49        43.17        18.87        84.36        72.07 
TCGA-AK-3436 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       67.17        57.34        46.78        40.01        48.69        39.12 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4713 TCGA-B0-4834 TCGA-B0-4842 
       12.13         1.32         3.58         6.61        68.71        53.79 
TCGA-B0-5083 TCGA-B0-5088 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B4-5835 
       15.29        14.24        85.22         5.85         1.64         0.53 
TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-4621 TCGA-BP-4163 TCGA-BP-4334 TCGA-BP-4761 
        5.46         0.62         7.07        93.34        21.21         5.98 
TCGA-BP-4797 TCGA-BP-4959 TCGA-BP-4962 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4971 
       36.39        87.45        58.68         6.71        57.37        48.89 
TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5168 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       42.97        18.51        48.10        14.17        65.69        54.61 
TCGA-CJ-4869 TCGA-CJ-4881 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4900 TCGA-CZ-4861 
       83.97        66.18        51.48        26.89        41.88        14.63 
TCGA-CZ-4866 TCGA-CZ-5469 
       58.13        31.07 

$subtype2
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 
       47.21        39.12        37.15        49.58        48.56        36.33 
TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3346 TCGA-A3-3349 TCGA-A3-3351 
       38.99        37.38        48.82         4.50        45.53        29.92 
TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 
       46.85        42.97        28.67        34.65        25.51        24.16 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 
       10.98        35.18        20.71        18.64        28.31        23.87 
TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3430 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 
       73.08        66.31        15.78        68.58        48.36        49.28 
TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 
       28.70        22.45         1.51        38.40        31.27        28.04 
TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4718 
        2.53         6.84         0.85         0.16         0.10         7.04 
TCGA-B0-4814 TCGA-B0-4817 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        1.55        27.88        14.01        48.10        10.09        78.41 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 
       23.93        53.85         4.57        65.26        39.42        26.04 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5085 
        2.27        35.47        70.52        19.99        42.44        25.28 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 
       15.09        10.95        15.95        90.84        90.44        52.50 
TCGA-B0-5107 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5119 
       30.48        18.41         0.72         2.96         3.39         1.58 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
        6.12         6.25         0.33        71.67        48.89        60.89 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 
       34.26        31.04        37.32        71.70        79.73        12.33 
TCGA-B0-5701 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 
       41.95         8.61       109.64        79.36        31.46        83.93 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 
       80.15        61.28        76.41         6.38         3.62         2.96 
TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5377 
        0.49         7.04        10.36         6.28         5.52         9.57 
TCGA-B4-5832 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 
        0.23         1.25         4.64         0.36         0.23        16.80 
TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5158 
       12.46         9.17        13.28         8.38         5.95         2.96 
TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 
        4.37         0.76         0.26         0.46         6.38         0.46 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
      111.02        85.48        94.72        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 
       96.85         0.43        61.78        97.45         3.55        27.78 
TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4335 TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 
       62.07        80.65        15.12        90.28        18.48        52.24 
TCGA-BP-4344 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4353 TCGA-BP-4355 
       54.77        49.08        44.94        31.86        12.33        31.33 
TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 
       12.30        72.59        76.41        71.80        48.03        13.15 
TCGA-BP-4771 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4789 
        5.29        60.56        13.48        56.91        68.38        48.95 
TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4973 
       63.62        60.30        61.51        58.98        49.35        45.50 
TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 
        7.23        47.11        53.65        14.93        36.07        33.30 
TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-5001 
       36.95        34.32        16.44         5.79        45.07        38.70 
TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5009 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 
       37.02        37.48        35.90         1.78        74.20        30.64 
TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5183 
       52.27         9.63        62.86        62.20        49.15        36.23 
TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 
       37.25        37.22        22.78        13.35        27.02        33.21 
TCGA-BP-5191 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5201 
       31.76        23.47        13.41        44.52        28.96        31.27 
TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4870 
        0.95        59.84        75.88        58.92        11.05        49.22 
TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 
       77.36        64.27        71.87        32.65        69.86        64.14 
TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 
       21.34        49.97        24.62        27.65        59.44        50.20 
TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 
       49.94        51.25        58.92        49.15        49.25        50.30 
TCGA-CJ-4912 TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 
       54.44        45.11         4.57        72.00        79.86        18.84 
TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6028 
       18.12        61.91        62.10        73.32        67.00        53.42 
TCGA-CJ-6032 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 
       83.77        64.57        92.02        81.83         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6088 TCGA-CW-6093 
       73.18        78.15        35.34        74.63        75.98        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5451 
       25.45         0.59        58.75        55.56        93.04        54.84 
TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 
       51.16         0.82        23.74        18.44        50.86        51.22 
TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5465 
       49.81        47.01        10.85        10.22        21.76        45.27 
TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 
       22.52         2.40         1.94        67.13        49.02        53.56 
TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5569 
       12.26        14.30        52.57        43.69        45.96        11.67 
TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 
       33.04        18.08         6.77         4.14 

$subtype3
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3362 TCGA-A3-3387 
        0.53        49.08        49.02        36.07        51.25        20.25 
TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3445 TCGA-B0-4688 TCGA-B0-4690 
      109.91        29.06        60.92        42.05         3.22         1.41 
TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 
        4.57         3.48        28.47        18.97         1.38        65.06 
TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4810 TCGA-B0-4811 TCGA-B0-4813 
        5.98        19.69        43.96         8.75        39.32         0.59 
TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 
       49.02        35.54         6.02        40.41        36.53        14.93 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 
       29.06        40.70        42.48        10.52        10.29        29.00 
TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 
        7.30         7.66         7.27         8.05         2.20         4.96 
TCGA-B0-5098 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5400 
       52.08        62.89         5.33        19.27         1.81        22.26 
TCGA-B0-5691 TCGA-B0-5694 TCGA-B0-5702 TCGA-B0-5709 TCGA-B2-5636 TCGA-B4-5378 
       91.43        15.42        38.07        77.49         8.48         5.75 
TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 
       23.31         7.43         0.72         0.13         8.15         6.48 
TCGA-B8-5551 TCGA-B8-5552 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4176 
        0.49         7.20        89.36        23.05        62.24        64.27 
TCGA-BP-4177 TCGA-BP-4326 TCGA-BP-4332 TCGA-BP-4337 TCGA-BP-4342 TCGA-BP-4343 
       54.90        53.39        37.25         0.07        74.17        62.86 
TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 
       49.84        11.31        33.99        73.94        44.15        41.75 
TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4790 TCGA-BP-4795 
       61.68        10.82        11.64        15.75        36.53        20.38 
TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 
       10.98        37.25        36.95         6.67        47.97         6.94 
TCGA-BP-4960 TCGA-BP-4970 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
       71.41        14.20        46.42        31.27        25.81        27.19 
TCGA-BP-4989 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 
        3.85        30.61        35.21        28.83         6.31        79.27 
TCGA-BP-5182 TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4636 
       38.30        24.59        33.47        19.82        46.55        63.25 
TCGA-CJ-4637 TCGA-CJ-4642 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4882 
       73.22        53.16        79.63        47.18        74.24        61.91 
TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4895 TCGA-CJ-4901 TCGA-CJ-4918 TCGA-CJ-4923 
       63.95        68.55        39.45        47.67         3.02        18.81 
TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5689 
       63.85        84.66        25.71        22.29        25.25         0.20 
TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-6090 
       60.99        75.55        62.63         7.36        66.28        75.88 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4862 
       18.74        46.16        47.08        63.88         6.74        60.59 
TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5464 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5568 
        5.42        51.22        49.05        22.78        29.88        12.16 
TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       37.15        23.77        23.90         3.88 

subtype1 subtype2 subtype3 
    0.53     0.10     0.07 
subtype1 subtype2 subtype3 
   93.34   111.02   109.91 
subtype1 subtype2 subtype3 
  39.565   35.985   29.470 
[1] "0.5 - 93.3 (39.6)"  "0.1 - 111.0 (36.0)" "0.1 - 109.9 (29.5)"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[205] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[439] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype2" "subtype3" "subtype2" "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus         0   1
  subtype1  15  36
  subtype2 105 176
  subtype3  43 105
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   36
  subtype2  105  176
  subtype3   43  105
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15      105       43
  MALE         36      176      105
D10V4, continuous
D10V5, multiclass
D10V6, binary
          cls
clus         0   1
  subtype1  26   5
  subtype2 128   4
  subtype3  68   8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    5
  subtype2  128    4
  subtype3   68    8
   clus
vv  subtype1 subtype2 subtype3
  0       26      128       68
  1        5        4        8
D10V7, binary
          cls
clus         0   1
  subtype1  45   6
  subtype2 241  40
  subtype3 119  29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45    6
  subtype2  241   40
  subtype3  119   29
    clus
vv   subtype1 subtype2 subtype3
  M0       45      241      119
  M1        6       40       29
D10V8, multiclass
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
                "PATHOLOGY.T"                 "PATHOLOGY.N" 
                           V7                            V8 
        "PATHOLOGICSPREAD(M)"                 "TUMOR.STAGE" 
> q(save="no")
