
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LAML-TB/2404478/1.GDAC_mergedClustering.Finished/LAML-TB.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML-TP/2330206/1.GDAC_clinicalDataPicker.Finished/LAML-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=200, in cluster file=197, common to both=197
[1]   5 197
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6 
48 18 26 40 48 14 
 1  2  3  4  5  6 
48 18 26 40 48 14 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
74 57 48 
 1  2  3 
74 57 48 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2 
 61 118 
  1   2 
 61 118 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
86 40 61 
 1  2  3 
86 40 61 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
38 82 67 
 1  2  3 
38 82 67 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "KARNOFSKYPERFORMANCESCORE"       
[11] "BATCHNUMBER"                     

Input Data has 11 rows and 197 columns.

[1] "Batch" "11"   
[1] "Last Follow UP"
TCGA-AB-2802 TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 
          NA           NA         2556           NA           NA           NA 
TCGA-AB-2808 TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 
        2861           NA           NA           NA           NA           NA 
TCGA-AB-2814 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 
          NA           NA           NA           NA           NA         2496 
TCGA-AB-2820 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2823 TCGA-AB-2824 TCGA-AB-2825 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 
          NA           NA         2284           NA           NA           NA 
TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2837 
          NA           NA           NA         1673           NA           NA 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2842 TCGA-AB-2843 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2847 TCGA-AB-2848 TCGA-AB-2849 
          NA           NA           NA           NA           NA         2220 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2861 TCGA-AB-2862 TCGA-AB-2863 
          NA           NA           NA           NA         1430           NA 
TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 
          NA           NA           NA           NA          243           NA 
TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2876 
         153          638          273          396          212         1219 
TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2882 
         638           NA          245          424          393           NA 
TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2887 TCGA-AB-2888 
         730           NA           NA          181           NA          334 
TCGA-AB-2889 TCGA-AB-2890 TCGA-AB-2891 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
         304           NA           NA          942           NA           NA 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
          NA           NA          243          393           NA           NA 
TCGA-AB-2901 TCGA-AB-2903 TCGA-AB-2904 TCGA-AB-2906 TCGA-AB-2907 TCGA-AB-2908 
          58           NA           NA          577           NA           NA 
TCGA-AB-2909 TCGA-AB-2910 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 
          30           NA         1186           NA         1216          792 
TCGA-AB-2915 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2918 TCGA-AB-2919 TCGA-AB-2920 
          NA          882         1216           NA           61           NA 
TCGA-AB-2921 TCGA-AB-2922 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 
          NA           NA           NA           90           NA           NA 
TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2930 TCGA-AB-2931 TCGA-AB-2932 
          NA           59           NA           NA           NA           NA 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
          NA           28           NA           59           NA           NA 
TCGA-AB-2939 TCGA-AB-2940 TCGA-AB-2941 TCGA-AB-2942 TCGA-AB-2943 TCGA-AB-2944 
         455           NA           NA          641           NA           NA 
TCGA-AB-2945 TCGA-AB-2946 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 
          NA           NA           31           NA          699          306 
TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
          NA         1492           NA           NA          608           NA 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
          NA         1277           NA           NA         1035           NA 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
        1127           NA           NA           NA           NA           NA 
TCGA-AB-2975 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 
          NA           NA           NA          699          671          699 
TCGA-AB-2981 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
         487          149           NA         1156           NA           NA 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
          NA           NA           NA          457         1826           NA 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2997 TCGA-AB-2998 
          NA         1798         1551         1581           NA           NA 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
        1734         1249         1581           NA         2099           NA 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
        1581           NA           NA         1885         1887 
Variable 1:'AGE':	nDistinctValues=63,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=66,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 197 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=63, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = METHLYATION_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 12 30
  subtype2 12  4
  subtype3  7 17
  subtype4 21 15
  subtype5  9 31
  subtype6  2  9
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      42       16       24       36       40       11 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      30        4       17       15       31        9 
$subtype1
TCGA-AB-2802 TCGA-AB-2809 TCGA-AB-2811 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2824 
       12.00         2.04         7.99         8.05         9.96         0.99 
TCGA-AB-2825 TCGA-AB-2832 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2848 TCGA-AB-2851 
        6.94        12.00        55.00        17.00        14.96         7.96 
TCGA-AB-2853 TCGA-AB-2869 TCGA-AB-2879 TCGA-AB-2883 TCGA-AB-2893 TCGA-AB-2894 
        2.89         7.99         8.05        24.00         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2911 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2945 
        5.03         7.00        38.99         2.96         7.96         7.99 
TCGA-AB-2947 TCGA-AB-2956 TCGA-AB-2963 TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 
        1.02         6.02        53.95        11.01        34.03        37.05 
TCGA-AB-2972 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2981 TCGA-AB-2985 TCGA-AB-2986 
        0.99         3.02        30.08        16.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2993 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3011 
        6.05         0.99        25.02        69.01        15.91        61.97 

$subtype2
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2862 TCGA-AB-2872 
       26.04        84.03         0.92        46.06        47.01        20.98 
TCGA-AB-2897 TCGA-AB-2906 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2991 TCGA-AB-2998 
        7.99        18.97        22.98         4.90        60.03         1.02 
TCGA-AB-2999 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
       57.01        51.98        51.98        62.04 

$subtype3
TCGA-AB-2805 TCGA-AB-2810 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2826 TCGA-AB-2863 
       18.94         1.02        26.99        31.96        24.03         1.02 
TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2874 TCGA-AB-2877 TCGA-AB-2884 TCGA-AB-2900 
        5.00         6.05        13.02        20.98        24.03         6.02 
TCGA-AB-2901 TCGA-AB-2919 TCGA-AB-2926 TCGA-AB-2936 TCGA-AB-2959 TCGA-AB-2971 
        1.91         2.01        14.99         1.94        16.08        26.04 
TCGA-AB-2973 TCGA-AB-2977 TCGA-AB-2984 TCGA-AB-2990 TCGA-AB-2992 TCGA-AB-3002 
       20.02         0.99        38.01        15.02        56.09        47.05 

$subtype4
TCGA-AB-2806 TCGA-AB-2808 TCGA-AB-2815 TCGA-AB-2819 TCGA-AB-2828 TCGA-AB-2833 
       31.04        94.06        26.99        82.06        75.09        14.99 
TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2849 TCGA-AB-2855 TCGA-AB-2858 TCGA-AB-2870 
        9.96        46.09        72.99         6.94        18.94         5.00 
TCGA-AB-2875 TCGA-AB-2876 TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2886 TCGA-AB-2888 
        6.97        40.08        13.94        12.92         5.95        10.98 
TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2909 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 
        9.99        30.97         0.99         9.01        26.04        29.00 
TCGA-AB-2937 TCGA-AB-2939 TCGA-AB-2942 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 
        7.07        14.96        21.07        10.06        49.05        16.08 
TCGA-AB-2957 TCGA-AB-2966 TCGA-AB-2979 TCGA-AB-3000 TCGA-AB-3008 TCGA-AB-3009 
       19.99        28.08        22.06        41.06        27.02        18.94 

$subtype5
TCGA-AB-2807 TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2817 TCGA-AB-2829 TCGA-AB-2830 
        5.92         1.02        26.04         8.98         8.98         9.04 
TCGA-AB-2831 TCGA-AB-2838 TCGA-AB-2843 TCGA-AB-2847 TCGA-AB-2854 TCGA-AB-2857 
       21.04        12.00         7.07        19.96        12.03        10.06 
TCGA-AB-2860 TCGA-AB-2868 TCGA-AB-2871 TCGA-AB-2873 TCGA-AB-2878 TCGA-AB-2882 
       14.01         4.96         5.03         8.98        12.00        12.00 
TCGA-AB-2885 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2917 
        7.04        12.92        22.06        16.96         1.02        39.98 
TCGA-AB-2920 TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2934 
       12.03         2.93         1.94         4.04         4.01         0.92 
TCGA-AB-2935 TCGA-AB-2938 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2952 TCGA-AB-2968 
        1.97         9.96        19.07        22.98         1.02        15.06 
TCGA-AB-2978 TCGA-AB-2983 TCGA-AB-2995 TCGA-AB-2996 
       22.98        11.01        50.99        51.98 

$subtype6
TCGA-AB-2812 TCGA-AB-2827 TCGA-AB-2834 TCGA-AB-2839 TCGA-AB-2844 TCGA-AB-2856 
       12.03         8.98         8.05        15.98         3.98         4.90 
TCGA-AB-2913 TCGA-AB-2923 TCGA-AB-2964 TCGA-AB-2970 TCGA-AB-2989 
       39.98         1.02        41.98        10.03        12.00 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.99     0.92     0.99     0.99     0.92     1.02 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   69.01    84.03    56.09    94.06    51.98    41.98 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   8.020   36.050   15.550   19.465   10.535   10.030 
[1] "1.0 - 69.0 (8.0)"  "0.9 - 84.0 (36.0)" "1.0 - 56.1 (15.5)"
[4] "1.0 - 94.1 (19.5)" "0.9 - 52.0 (10.5)" "1.0 - 42.0 (10.0)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
  [7] "subtype4" "subtype1" "subtype3" "subtype1" "subtype6" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype5" "subtype1" "subtype4"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype6"
 [25] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [31] "subtype6" "subtype1" "subtype1" "subtype5" "subtype6" "subtype2"
 [37] "subtype2" "subtype5" "subtype6" "subtype4" "subtype4" "subtype5"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype5" "subtype4"
 [49] "subtype6" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype5" "subtype1" "subtype4" "subtype5"
 [61] "subtype2" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [67] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype1"
 [73] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype5"
 [85] "subtype5" "subtype3" "subtype3" "subtype5" "subtype2" "subtype5"
 [91] "subtype4" "subtype1" "subtype4" "subtype6" "subtype4" "subtype4"
 [97] "subtype5" "subtype3" "subtype5" "subtype6" "subtype1" "subtype1"
[103] "subtype3" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[109] "subtype5" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[115] "subtype1" "subtype1" "subtype5" "subtype5" "subtype4" "subtype5"
[121] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[127] "subtype6" "subtype1" "subtype4" "subtype1" "subtype5" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype5" "subtype4" "subtype2" "subtype1" "subtype2"
[145] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype6" "subtype3" "subtype2" "subtype3" "subtype1" "subtype5"
[157] "subtype5" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
  [7] "subtype4" "subtype1" "subtype3" "subtype1" "subtype6" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype5" "subtype1" "subtype4"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype6"
 [25] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [31] "subtype6" "subtype1" "subtype1" "subtype5" "subtype6" "subtype2"
 [37] "subtype2" "subtype5" "subtype6" "subtype4" "subtype4" "subtype5"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype5" "subtype4"
 [49] "subtype6" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype5" "subtype1" "subtype4" "subtype5"
 [61] "subtype2" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [67] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype1"
 [73] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype5"
 [85] "subtype5" "subtype3" "subtype3" "subtype5" "subtype2" "subtype5"
 [91] "subtype4" "subtype1" "subtype4" "subtype6" "subtype4" "subtype4"
 [97] "subtype5" "subtype3" "subtype5" "subtype6" "subtype1" "subtype1"
[103] "subtype3" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[109] "subtype5" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[115] "subtype1" "subtype1" "subtype5" "subtype5" "subtype4" "subtype5"
[121] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[127] "subtype6" "subtype1" "subtype4" "subtype1" "subtype5" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype5" "subtype4" "subtype2" "subtype1" "subtype2"
[145] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype6" "subtype3" "subtype2" "subtype3" "subtype1" "subtype5"
[157] "subtype5" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
  [7] "subtype4" "subtype1" "subtype3" "subtype1" "subtype6" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype5" "subtype1" "subtype4"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype6"
 [25] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [31] "subtype6" "subtype1" "subtype1" "subtype5" "subtype6" "subtype2"
 [37] "subtype2" "subtype5" "subtype6" "subtype4" "subtype4" "subtype5"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype5" "subtype4"
 [49] "subtype6" "subtype5" "subtype4" "subtype5" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype5" "subtype1" "subtype4" "subtype5"
 [61] "subtype2" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [67] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype1"
 [73] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype4"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype5"
 [85] "subtype5" "subtype3" "subtype3" "subtype5" "subtype2" "subtype5"
 [91] "subtype4" "subtype1" "subtype4" "subtype6" "subtype4" "subtype4"
 [97] "subtype5" "subtype3" "subtype5" "subtype6" "subtype1" "subtype1"
[103] "subtype3" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[109] "subtype5" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[115] "subtype1" "subtype1" "subtype5" "subtype5" "subtype4" "subtype5"
[121] "subtype4" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[127] "subtype6" "subtype1" "subtype4" "subtype1" "subtype5" "subtype1"
[133] "subtype6" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype5" "subtype4" "subtype2" "subtype1" "subtype2"
[145] "subtype5" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype6" "subtype3" "subtype2" "subtype3" "subtype1" "subtype5"
[157] "subtype5" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 24 24
  subtype2 10  8
  subtype3 13 13
  subtype4 18 22
  subtype5 19 29
  subtype6  5  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   24
  subtype2   10    8
  subtype3   13   13
  subtype4   18   22
  subtype5   19   29
  subtype6    5    9

Clustering(2) Variable = MRNASEQ_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 28 39
  subtype2 18 32
  subtype3 14 26
subtype1 subtype2 subtype3 
      67       50       40 
subtype1 subtype2 subtype3 
      39       32       26 
$subtype1
TCGA-AB-2803 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2814 TCGA-AB-2817 
       26.04        31.04         5.92        94.06        26.04         8.98 
TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2838 TCGA-AB-2843 TCGA-AB-2845 
       82.06        26.99        31.96        12.00         7.07         9.96 
TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2854 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2860 
       19.96        72.99        12.03        10.06        18.94        14.01 
TCGA-AB-2863 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2872 TCGA-AB-2875 TCGA-AB-2876 
        1.02         6.05         4.96        20.98         6.97        40.08 
TCGA-AB-2878 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2898 
       12.00        12.00        24.00         7.04         5.95        12.92 
TCGA-AB-2899 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2917 
       22.06         1.91        16.96         1.02         0.99        39.98 
TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        2.93         4.04         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2955 TCGA-AB-2959 
       14.96        22.98        10.06         1.02        16.08        16.08 
TCGA-AB-2964 TCGA-AB-2966 TCGA-AB-2970 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 
       41.98        28.08        10.03        22.98        22.06        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2995 TCGA-AB-2996 
        4.90        11.01        60.03        56.09        50.99        51.98 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       57.01        41.06        51.98        47.05        27.02        18.94 
TCGA-AB-3012 
       62.04 

$subtype2
TCGA-AB-2805 TCGA-AB-2813 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2824 
       18.94         1.02        26.99         8.05         9.96         0.99 
TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2828 TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 
        6.94        24.03        75.09        12.00        14.99         8.05 
TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2844 TCGA-AB-2846 TCGA-AB-2851 TCGA-AB-2856 
       55.00        17.00         3.98        46.09         7.96         4.90 
TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2870 TCGA-AB-2873 TCGA-AB-2880 TCGA-AB-2881 
        2.01         5.00         5.00         8.98        13.94        12.92 
TCGA-AB-2884 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2900 
       24.03        10.98         9.99        30.97         6.97         6.02 
TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2924 TCGA-AB-2925 
       38.99         9.01        26.04        29.00         2.96         7.96 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2942 TCGA-AB-2948 TCGA-AB-2954 TCGA-AB-2956 
        4.01         0.92        21.07        19.07        49.05         6.02 
TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2973 TCGA-AB-2981 TCGA-AB-2985 
       11.01        34.03        37.05        20.02        16.01         8.98 
TCGA-AB-2987 TCGA-AB-3005 
        6.05        69.01 

$subtype3
TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2830 TCGA-AB-2839 TCGA-AB-2840 
        1.02         7.99        12.03         9.04        15.98         0.92 
TCGA-AB-2841 TCGA-AB-2848 TCGA-AB-2853 TCGA-AB-2855 TCGA-AB-2859 TCGA-AB-2862 
       46.06        14.96         2.89         6.94         9.96        47.01 
TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2874 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2894 
        7.99         5.03        13.02        20.98         8.05         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2913 TCGA-AB-2919 TCGA-AB-2920 
        5.03         7.00         7.99        39.98         2.01        12.03 
TCGA-AB-2928 TCGA-AB-2963 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2976 TCGA-AB-2977 
        1.94        53.95        26.04         0.99        30.08         0.99 
TCGA-AB-2984 TCGA-AB-2986 TCGA-AB-2988 TCGA-AB-2990 TCGA-AB-2993 TCGA-AB-2994 
       38.01         6.97         0.99        15.02        25.02        59.11 
TCGA-AB-2998 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3011 
        1.02        15.91        51.98        61.97 

subtype1 subtype2 subtype3 
    0.99     0.92     0.92 
subtype1 subtype2 subtype3 
   94.06    75.09    61.97 
subtype1 subtype2 subtype3 
  16.080   10.995    9.500 
[1] "1.0 - 94.1 (16.1)" "0.9 - 75.1 (11.0)" "0.9 - 62.0 (9.5)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 33 41
  subtype2 24 33
  subtype3 27 21
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   41
  subtype2   24   33
  subtype3   27   21
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       24       27
  MALE         41       33       21

Clustering(3) Variable = MRNASEQ_CHIERARCHICAL
D3V1, survival
          sevent
clus2       0  1
  subtype1 19 33
  subtype2 41 64
subtype1 subtype2 
      52      105 
subtype1 subtype2 
      33       64 
$subtype1
TCGA-AB-2805 TCGA-AB-2811 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2824 
       18.94         7.99        26.99         8.05         9.96         0.99 
TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2828 TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 
        6.94        24.03        75.09        12.00        14.99         8.05 
TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2844 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2851 
       55.00        17.00         3.98        46.09        14.96         7.96 
TCGA-AB-2856 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2870 TCGA-AB-2873 TCGA-AB-2881 
        4.90         2.01         5.00         5.00         8.98        12.92 
TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 
       24.00        24.03        10.98         9.99        30.97         6.97 
TCGA-AB-2894 TCGA-AB-2900 TCGA-AB-2911 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2924 
        5.92         6.02        38.99        26.04        29.00         2.96 
TCGA-AB-2925 TCGA-AB-2934 TCGA-AB-2942 TCGA-AB-2954 TCGA-AB-2956 TCGA-AB-2963 
        7.96         0.92        21.07        49.05         6.02        53.95 
TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2971 TCGA-AB-2973 TCGA-AB-2977 
       11.01        34.03        37.05        26.04        20.02         0.99 
TCGA-AB-2981 TCGA-AB-2985 TCGA-AB-2987 TCGA-AB-3005 
       16.01         8.98         6.05        69.01 

$subtype2
TCGA-AB-2803 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2810 TCGA-AB-2812 
       26.04        31.04         5.92        94.06         1.02        12.03 
TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        1.02        26.04         8.98        82.06        26.99        31.96 
TCGA-AB-2830 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
        9.04        12.00        15.98         0.92        46.06         7.07 
TCGA-AB-2845 TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
        9.96        19.96        72.99         2.89        12.03         6.94 
TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 
       10.06        18.94         9.96        14.01        47.01         1.02 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2874 
        6.05         4.96         7.99         5.03        20.98        13.02 
TCGA-AB-2875 TCGA-AB-2876 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2880 
        6.97        40.08        20.98        12.00         8.05        13.94 
TCGA-AB-2882 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       12.00         7.04         5.95         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2909 
       12.92        22.06         1.91        16.96         1.02         0.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2927 
        9.01        39.98        39.98         2.01        12.03         2.93 
TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 
        1.94         4.04         4.01         1.97         1.94         7.07 
TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        9.96        14.96        19.07        22.98        10.06         1.02 
TCGA-AB-2955 TCGA-AB-2959 TCGA-AB-2964 TCGA-AB-2966 TCGA-AB-2970 TCGA-AB-2972 
       16.08        16.08        41.98        28.08        10.03         0.99 
TCGA-AB-2976 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08        22.98        22.06        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2986 TCGA-AB-2988 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
       38.01         6.97         0.99        15.02        60.03        56.09 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 
       25.02        59.11        50.99        51.98         1.02        57.01 
TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       41.06        51.98        47.05        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

subtype1 subtype2 
    0.92     0.92 
subtype1 subtype2 
   75.09    94.06 
subtype1 subtype2 
  11.505   12.920 
[1] "0.9 - 75.1 (11.5)" "0.9 - 94.1 (12.9)"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 29 32
  subtype2 55 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   32
  subtype2   55   63
        clus
vv       subtype1 subtype2
  FEMALE       29       55
  MALE         32       63

Clustering(4) Variable = MIRSEQ_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 21 54
  subtype2 18 18
  subtype3 23 29
subtype1 subtype2 subtype3 
      75       36       52 
subtype1 subtype2 subtype3 
      54       18       29 
$subtype1
TCGA-AB-2802 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2816 
       12.00         1.02         7.99        12.03        26.04         8.05 
TCGA-AB-2818 TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2830 
        9.96        31.96         0.99         6.94        24.03         9.04 
TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2844 
       12.00         8.05        55.00        17.00        15.98         3.98 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2855 TCGA-AB-2856 
       14.96        72.99         7.96         2.89         6.94         4.90 
TCGA-AB-2859 TCGA-AB-2863 TCGA-AB-2866 TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2873 
        9.96         1.02         5.00         7.99         5.03         8.98 
TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2893 TCGA-AB-2894 
       20.98         8.05        24.00        24.03         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2904 TCGA-AB-2911 TCGA-AB-2913 
        5.03        22.06         6.02        16.96        38.99        39.98 
TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2933 
        2.01        12.03         1.02         2.96         7.96         4.01 
TCGA-AB-2934 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2956 TCGA-AB-2963 TCGA-AB-2965 
        0.92         7.99         1.02         6.02        53.95        11.01 
TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       28.08        34.03        37.05        26.04         0.99        20.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2981 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
       30.08         0.99        16.01        38.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2992 TCGA-AB-2993 
        6.05         0.99        12.00        15.02        56.09        25.02 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3011 
       69.01        15.91        61.97 

$subtype2
TCGA-AB-2803 TCGA-AB-2821 TCGA-AB-2838 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
       26.04        26.99        12.00         0.92        46.06         7.07 
TCGA-AB-2847 TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2865 TCGA-AB-2867 TCGA-AB-2868 
       19.96        10.06        14.01         2.01         6.05         4.96 
TCGA-AB-2872 TCGA-AB-2874 TCGA-AB-2878 TCGA-AB-2885 TCGA-AB-2888 TCGA-AB-2897 
       20.98        13.02        12.00         7.04        10.98         7.99 
TCGA-AB-2898 TCGA-AB-2917 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2939 TCGA-AB-2948 
       12.92        39.98         4.04         1.97        14.96        19.07 
TCGA-AB-2949 TCGA-AB-2952 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2991 
       22.98         1.02        22.98        22.98         4.90        60.03 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2999 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
       59.11        50.99        57.01        51.98        51.98        62.04 

$subtype3
TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2813 TCGA-AB-2815 
       18.94        31.04         5.92        94.06         1.02        26.99 
TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2828 TCGA-AB-2833 TCGA-AB-2845 TCGA-AB-2846 
        8.98        82.06        75.09        14.99         9.96        46.09 
TCGA-AB-2854 TCGA-AB-2858 TCGA-AB-2862 TCGA-AB-2870 TCGA-AB-2875 TCGA-AB-2876 
       12.03        18.94        47.01         5.00         6.97        40.08 
TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2886 TCGA-AB-2889 TCGA-AB-2892 
       13.94        12.92        12.00         5.95         9.99        30.97 
TCGA-AB-2901 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 
        1.91         1.02         0.99         9.01        26.04        29.00 
TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
       14.99         2.93         1.94         1.94         7.07         9.96 
TCGA-AB-2942 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 
       21.07        10.06        49.05        16.08        19.99        16.08 
TCGA-AB-2964 TCGA-AB-2970 TCGA-AB-2979 TCGA-AB-2983 TCGA-AB-2996 TCGA-AB-2998 
       41.98        10.03        22.06        11.01        51.98         1.02 
TCGA-AB-3000 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       41.06        47.05        27.02        18.94 

subtype1 subtype2 subtype3 
    0.92     0.92     0.99 
subtype1 subtype2 subtype3 
   72.99    62.04    94.06 
subtype1 subtype2 subtype3 
   9.960   14.485   14.990 
[1] "0.9 - 73.0 (10.0)" "0.9 - 62.0 (14.5)" "1.0 - 94.1 (15.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 39 47
  subtype2 17 23
  subtype3 30 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   47
  subtype2   17   23
  subtype3   30   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       17       30
  MALE         47       23       31

Clustering(5) Variable = MIRSEQ_CHIERARCHICAL
D5V1, survival
          sevent
clus2       0  1
  subtype1 18 16
  subtype2 21 50
  subtype3 23 35
subtype1 subtype2 subtype3 
      34       71       58 
subtype1 subtype2 subtype3 
      16       50       35 
$subtype1
TCGA-AB-2803 TCGA-AB-2821 TCGA-AB-2838 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
       26.04        26.99        12.00         0.92        46.06         7.07 
TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2865 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2872 
       10.06        14.01         2.01         6.05         4.96        20.98 
TCGA-AB-2874 TCGA-AB-2878 TCGA-AB-2885 TCGA-AB-2888 TCGA-AB-2897 TCGA-AB-2898 
       13.02        12.00         7.04        10.98         7.99        12.92 
TCGA-AB-2917 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2939 TCGA-AB-2949 TCGA-AB-2952 
       39.98         4.04         1.97        14.96        22.98         1.02 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2991 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       22.98        22.98        60.03        59.11        50.99        51.98 
TCGA-AB-2999 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
       57.01        51.98        51.98        62.04 

$subtype2
TCGA-AB-2802 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2816 TCGA-AB-2818 
       12.00         1.02         7.99        12.03         8.05         9.96 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2830 TCGA-AB-2832 
       31.96         0.99         6.94        24.03         9.04        12.00 
TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2844 TCGA-AB-2848 
        8.05        55.00        17.00        15.98         3.98        14.96 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2856 TCGA-AB-2859 TCGA-AB-2863 TCGA-AB-2866 
        7.96         2.89         4.90         9.96         1.02         5.00 
TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2873 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2883 
        7.99         5.03         8.98        20.98         8.05        24.00 
TCGA-AB-2884 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2900 TCGA-AB-2904 
       24.03         6.97         5.92         5.03         6.02        16.96 
TCGA-AB-2911 TCGA-AB-2913 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 
       38.99        39.98         2.01        12.03         1.02         2.96 
TCGA-AB-2925 TCGA-AB-2928 TCGA-AB-2934 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2956 
        7.96         1.94         0.92         7.99         1.02         6.02 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2969 
       53.95        41.98        11.01        28.08        34.03        37.05 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2976 TCGA-AB-2981 TCGA-AB-2984 
       26.04         0.99        20.02        30.08        16.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3011 
       56.09        25.02        69.01        15.91        61.97 

$subtype3
TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2813 TCGA-AB-2814 
       18.94        31.04         5.92        94.06         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2828 TCGA-AB-2833 TCGA-AB-2845 
       26.99         8.98        82.06        75.09        14.99         9.96 
TCGA-AB-2846 TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2858 
       46.09        19.96        72.99        12.03         6.94        18.94 
TCGA-AB-2862 TCGA-AB-2870 TCGA-AB-2875 TCGA-AB-2876 TCGA-AB-2880 TCGA-AB-2881 
       47.01         5.00         6.97        40.08        13.94        12.92 
TCGA-AB-2882 TCGA-AB-2886 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2899 TCGA-AB-2901 
       12.00         5.95         9.99        30.97        22.06         1.91 
TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2926 
        1.02         0.99         9.01        26.04        29.00        14.99 
TCGA-AB-2927 TCGA-AB-2933 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2942 
        2.93         4.01         1.94         7.07         9.96        21.07 
TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 
       19.07        10.06        49.05        16.08        19.99        16.08 
TCGA-AB-2970 TCGA-AB-2977 TCGA-AB-2979 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2998 
       10.03         0.99        22.06         4.90        11.01         1.02 
TCGA-AB-3000 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       41.06        47.05        27.02        18.94 

subtype1 subtype2 subtype3 
    0.92     0.92     0.99 
subtype1 subtype2 subtype3 
   62.04    69.01    94.06 
subtype1 subtype2 subtype3 
  14.485    9.960   14.990 
[1] "0.9 - 62.0 (14.5)" "0.9 - 69.0 (10.0)" "1.0 - 94.1 (15.0)"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 16 22
  subtype2 40 42
  subtype3 30 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   22
  subtype2   40   42
  subtype3   30   37
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       16       40       30
  MALE         22       42       37
           V1.D              V2              V3 
"Time to Death"           "AGE"        "GENDER" 
> q(save="no")
