
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/301940/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LIHC-TP/2330208/1.GDAC_clinicalDataPicker.Finished/LIHC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=62, in cluster file=97, common to both=61
[1] 53 61
[1] "Amp Peak  1(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           17                            44 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           17                            44 
[1] "Amp Peak  2(1q22) mutation analysis"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         47                          14 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         47                          14 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           40                            21 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           40                            21 
[1] "Amp Peak  4(2p24.1) mutation analysis"
[1] 3
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           16                            45 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           16                            45 
[1] "Amp Peak  5(2q33.1) mutation analysis"
[1] 3
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           15                            46 
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           15                            46 
[1] "Amp Peak  6(3q26.31) mutation analysis"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            13                             48 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            13                             48 
[1] "Amp Peak  7(4q31.3) mutation analysis"
[1] 3
  AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            53 
  AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            53 
[1] "Amp Peak  8(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            29                             32 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            29                             32 
[1] "Amp Peak  9(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           22                            39 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           22                            39 
[1] "Amp Peak 10(6p25.2) mutation analysis"
[1] 3
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           24                            37 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           24                            37 
[1] "Amp Peak 11(6p21.1) mutation analysis"
[1] 3
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           26                            35 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           26                            35 
[1] "Amp Peak 12(6q12) mutation analysis"
[1] 3
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         18                          43 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         18                          43 
[1] "Amp Peak 13(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                           23                            38 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                           23                            38 
[1] "Amp Peak 14(8q13.1) mutation analysis"
[1] 3
  AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE 
                           33                            28 
  AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE 
                           33                            28 
[1] "Amp Peak 15(8q24.13) mutation analysis"
[1] 3
  AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE 
                            38                             23 
  AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE 
                            38                             23 
[1] "Amp Peak 16(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            12                             49 
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            12                             49 
[1] "Amp Peak 17(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            10                             51 
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            10                             51 
[1] "Amp Peak 18(12q23.1) mutation analysis"
[1] 3
  AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE 
                            12                             49 
  AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE 
                            12                             49 
[1] "Amp Peak 19(13q32.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            13                             48 
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            13                             48 
[1] "Amp Peak 20(15q21.3) mutation analysis"
[1] 3
  AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE 
                            12                             49 
  AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE 
                            12                             49 
[1] "Amp Peak 21(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            12                             49 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            12                             49 
[1] "Amp Peak 22(17p11.2) mutation analysis"
[1] 3
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            11                             50 
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            11                             50 
[1] "Amp Peak 23(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                            29                             32 
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                            29                             32 
[1] "Amp Peak 24(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE 
                            30                             31 
  AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE 
                            30                             31 
[1] "Amp Peak 25(19q13.11) mutation analysis"
[1] 3
  AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE 
                             22                              39 
  AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE 
                             22                              39 
[1] "Amp Peak 26(20q13.13) mutation analysis"
[1] 3
  AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE 
                             20                              41 
  AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE 
                             20                              41 
[1] "Del Peak  1(1p36.32) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            29                             32 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            29                             32 
[1] "Del Peak  2(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            54 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            54 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           11                            50 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           11                            50 
[1] "Del Peak  4(3p13) mutation analysis"
[1] 3
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         12                          49 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         12                          49 
[1] "Del Peak  5(4q24) mutation analysis"
[1] 3
  DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE 
                         27                          34 
  DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE 
                         27                          34 
[1] "Del Peak  6(4q35.1) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           27                            34 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           27                            34 
[1] "Del Peak  7(5q23.1) mutation analysis"
[1] 3
  DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE 
                            7                            54 
  DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE 
                            7                            54 
[1] "Del Peak  8(6q16.3) mutation analysis"
[1] 3
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           20                            41 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           20                            41 
[1] "Del Peak  9(6q26) mutation analysis"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         21                          40 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         21                          40 
[1] "Del Peak 10(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           40                            21 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           40                            21 
[1] "Del Peak 11(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           27                            34 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           27                            34 
[1] "Del Peak 12(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                             4                             57 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                             4                             57 
[1] "Del Peak 13(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             22                              39 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             22                              39 
[1] "Del Peak 14(10q24.33) mutation analysis"
[1] 3
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             19                              42 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             19                              42 
[1] "Del Peak 15(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            13                             48 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            13                             48 
[1] "Del Peak 16(12p12.1) mutation analysis"
[1] 3
  DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE 
                            11                             50 
  DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE 
                            11                             50 
[1] "Del Peak 17(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE 
                              8                              53 
  DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE 
                              8                              53 
[1] "Del Peak 18(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            31                             30 
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            31                             30 
[1] "Del Peak 19(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE 
                            25                             36 
  DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE 
                            25                             36 
[1] "Del Peak 20(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            13                             48 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            13                             48 
[1] "Del Peak 21(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            27                             34 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            27                             34 
[1] "Del Peak 22(17p12) mutation analysis"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          37                           24 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          37                           24 
[1] "Del Peak 23(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            12                             49 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            12                             49 
[1] "Del Peak 24(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            15                             46 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            15                             46 
[1] "Del Peak 25(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE 
                            13                             48 
  DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE 
                            13                             48 
[1] "Del Peak 26(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE 
                             17                              44 
  DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE 
                             17                              44 
[1] "Del Peak 27(Xq27.3) mutation analysis"
[1] 3
  DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE 
                           11                            50 
  DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE 
                           11                            50 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "HISTOLOGICALTYPE"                
[11] "BATCHNUMBER"                     

Input Data has 11 rows and 61 columns.

[1] "Batch" "11"   
[1] "Last Follow UP"
TCGA-BC-4072 TCGA-BC-4073 TCGA-BC-A10Q TCGA-BC-A10R TCGA-BC-A10S TCGA-BC-A10T 
          NA          352           NA           NA           NA           NA 
TCGA-BC-A10U TCGA-BC-A10W TCGA-BC-A10X TCGA-BC-A10Y TCGA-BC-A10Z TCGA-BC-A110 
          NA           NA           NA           NA           NA           NA 
TCGA-BC-A112 TCGA-BC-A216 TCGA-BC-A217 TCGA-BC-A3KF TCGA-BC-A3KG TCGA-CC-5258 
          NA         1144          420            8          252            2 
TCGA-CC-5260 TCGA-CC-5261 TCGA-CC-5262 TCGA-CC-5263 TCGA-CC-5264 TCGA-CC-A1HT 
          NA           NA           NA           NA           NA           NA 
TCGA-DD-A113 TCGA-DD-A114 TCGA-DD-A115 TCGA-DD-A116 TCGA-DD-A118 TCGA-DD-A119 
         217           NA           NA           NA          693           NA 
TCGA-DD-A11A TCGA-DD-A11B TCGA-DD-A11C TCGA-DD-A11D TCGA-DD-A1E9 TCGA-DD-A1EC 
          79           NA          652           NA           NA          601 
TCGA-DD-A1EL TCGA-EP-A12J TCGA-EP-A26S TCGA-EP-A2KA TCGA-EP-A2KB TCGA-EP-A2KC 
          NA          129          110          111           60           NA 
TCGA-EP-A3JL TCGA-EP-A3RK TCGA-ES-A2HS TCGA-ES-A2HT TCGA-FV-A2QR TCGA-FV-A3I1 
          97           13           NA           NA           NA           NA 
TCGA-G3-A25S TCGA-G3-A25T TCGA-G3-A25U TCGA-G3-A25V TCGA-G3-A25W TCGA-G3-A25X 
          37         1175         1231          434          390         1359 
TCGA-G3-A25Y TCGA-G3-A25Z TCGA-G3-A3CG TCGA-G3-A3CH TCGA-G3-A3CI TCGA-G3-A3CJ 
          NA          269          253          192          179          136 
TCGA-G3-A3CK 
          27 
Variable 1:'AGE':	nDistinctValues=36,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 61 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=36, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3) mutation analysis
D1V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  1(1P22.3) MUTATED"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  1(1P22.3) WILD-TYPE"   "AMP PEAK  1(1P22.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  1(1P22.3) MUTATED" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  1(1P22.3) WILD-TYPE" "AMP PEAK  1(1P22.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK  1(1P22.3) MUTATED" 
[1] "hr=" "1.4"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED      6   11
  AMP PEAK  1(1P22.3) WILD-TYPE   16   28
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  FEMALE                           6                            16
  MALE                            11                            28

Clustering(2) Variable = Amp Peak  2(1q22) mutation analysis
D2V1, survival
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK  2(1Q22) WILD-TYPE" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "AMP PEAK  2(1Q22) MUTATED"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK  2(1Q22) MUTATED" "AMP PEAK  2(1Q22) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK  2(1Q22) WILD-TYPE"   "AMP PEAK  2(1Q22) MUTATED" 
                 TCGA-G3-A3CK 
  "AMP PEAK  2(1Q22) MUTATED" 
[1] "hr=" "1.7"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     15   32
  AMP PEAK  2(1Q22) WILD-TYPE    7    7
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  FEMALE                        15                           7
  MALE                          32                           7

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-G3-A3CK 
  "AMP PEAK  3(1Q42.3) MUTATED" 
[1] "hr=" "1.8"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     13   27
  AMP PEAK  3(1Q42.3) WILD-TYPE    9   12
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          13                             9
  MALE                            27                            12

Clustering(4) Variable = Amp Peak  4(2p24.1) mutation analysis
D4V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  4(2P24.1) MUTATED"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  4(2P24.1) MUTATED" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  4(2P24.1) WILD-TYPE"   "AMP PEAK  4(2P24.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  4(2P24.1) WILD-TYPE" "AMP PEAK  4(2P24.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  4(2P24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED      7    9
  AMP PEAK  4(2P24.1) WILD-TYPE   15   30
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  FEMALE                           7                            15
  MALE                             9                            30

Clustering(5) Variable = Amp Peak  5(2q33.1) mutation analysis
D5V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  5(2Q33.1) MUTATED"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  5(2Q33.1) MUTATED" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  5(2Q33.1) WILD-TYPE"   "AMP PEAK  5(2Q33.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  5(2Q33.1) WILD-TYPE" "AMP PEAK  5(2Q33.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  5(2Q33.1) WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q33.1) MUTATED      8    7
  AMP PEAK  5(2Q33.1) WILD-TYPE   14   32
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  FEMALE                           8                            14
  MALE                             7                            32

Clustering(6) Variable = Amp Peak  6(3q26.31) mutation analysis
D6V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK  6(3Q26.31) MUTATED"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK  6(3Q26.31) MUTATED" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK  6(3Q26.31) WILD-TYPE"   "AMP PEAK  6(3Q26.31) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  6(3Q26.31) WILD-TYPE" "AMP PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED      5    8
  AMP PEAK  6(3Q26.31) WILD-TYPE   17   31
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                            5                             17
  MALE                              8                             31

Clustering(7) Variable = Amp Peak  7(4q31.3) mutation analysis
D7V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK  7(4Q31.3) WILD-TYPE"   "AMP PEAK  7(4Q31.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  7(4Q31.3) MUTATED" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  7(4Q31.3) WILD-TYPE" "AMP PEAK  7(4Q31.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  7(4Q31.3) WILD-TYPE" 
[1] "hr=" "1.8"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q31.3) MUTATED      3    5
  AMP PEAK  7(4Q31.3) WILD-TYPE   19   34
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  FEMALE                           3                            19
  MALE                             5                            34

Clustering(8) Variable = Amp Peak  8(5p15.33) mutation analysis
D8V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK  8(5P15.33) MUTATED"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK  8(5P15.33) WILD-TYPE" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK  8(5P15.33) MUTATED" "AMP PEAK  8(5P15.33) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK  8(5P15.33) WILD-TYPE"   "AMP PEAK  8(5P15.33) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK  8(5P15.33) WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) MUTATED     11   18
  AMP PEAK  8(5P15.33) WILD-TYPE   11   21
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  FEMALE                           11                             11
  MALE                             18                             21

Clustering(9) Variable = Amp Peak  9(5q35.3) mutation analysis
D9V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"AMP PEAK  9(5Q35.3) WILD-TYPE"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK  9(5Q35.3) MUTATED"   "AMP PEAK  9(5Q35.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK  9(5Q35.3) MUTATED" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK  9(5Q35.3) WILD-TYPE" "AMP PEAK  9(5Q35.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"AMP PEAK  9(5Q35.3) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) MUTATED      7   15
  AMP PEAK  9(5Q35.3) WILD-TYPE   15   24
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  FEMALE                           7                            15
  MALE                            15                            24

Clustering(10) Variable = Amp Peak 10(6p25.2) mutation analysis
D10V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 10(6P25.2) MUTATED"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 10(6P25.2) WILD-TYPE"   "AMP PEAK 10(6P25.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 10(6P25.2) MUTATED" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 10(6P25.2) WILD-TYPE" "AMP PEAK 10(6P25.2) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 10(6P25.2) MUTATED" 
[1] "hr=" "1.5"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) MUTATED      9   15
  AMP PEAK 10(6P25.2) WILD-TYPE   13   24
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  FEMALE                           9                            13
  MALE                            15                            24

Clustering(11) Variable = Amp Peak 11(6p21.1) mutation analysis
D11V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 11(6P21.1) MUTATED"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 11(6P21.1) WILD-TYPE"   "AMP PEAK 11(6P21.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 11(6P21.1) MUTATED" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 11(6P21.1) WILD-TYPE" "AMP PEAK 11(6P21.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
  "AMP PEAK 11(6P21.1) MUTATED" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) MUTATED     10   16
  AMP PEAK 11(6P21.1) WILD-TYPE   12   23
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  FEMALE                          10                            12
  MALE                            16                            23

Clustering(12) Variable = Amp Peak 12(6q12) mutation analysis
D12V1, survival
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK 
  "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK 
  "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "AMP PEAK 12(6Q12) MUTATED"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"AMP PEAK 12(6Q12) WILD-TYPE"   "AMP PEAK 12(6Q12) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
  "AMP PEAK 12(6Q12) MUTATED" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"AMP PEAK 12(6Q12) WILD-TYPE" "AMP PEAK 12(6Q12) WILD-TYPE" 
                 TCGA-G3-A3CK 
  "AMP PEAK 12(6Q12) MUTATED" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) MUTATED      8   10
  AMP PEAK 12(6Q12) WILD-TYPE   14   29
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  FEMALE                         8                          14
  MALE                          10                          29

Clustering(13) Variable = Amp Peak 13(7q21.2) mutation analysis
D13V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 13(7Q21.2) MUTATED"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 13(7Q21.2) WILD-TYPE" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 13(7Q21.2) MUTATED" "AMP PEAK 13(7Q21.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 13(7Q21.2) WILD-TYPE"   "AMP PEAK 13(7Q21.2) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 13(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.6"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED     10   13
  AMP PEAK 13(7Q21.2) WILD-TYPE   12   26
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  FEMALE                          10                            12
  MALE                            13                            26

Clustering(14) Variable = Amp Peak 14(8q13.1) mutation analysis
D14V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"AMP PEAK 14(8Q13.1) WILD-TYPE" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "AMP PEAK 14(8Q13.1) MUTATED" "AMP PEAK 14(8Q13.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "AMP PEAK 14(8Q13.1) MUTATED"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"AMP PEAK 14(8Q13.1) WILD-TYPE"   "AMP PEAK 14(8Q13.1) MUTATED" 
                   TCGA-G3-A3CK 
"AMP PEAK 14(8Q13.1) WILD-TYPE" 
[1] "hr=" "1.4"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(8Q13.1) MUTATED      9   24
  AMP PEAK 14(8Q13.1) WILD-TYPE   13   15
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  FEMALE                           9                            13
  MALE                            24                            15

Clustering(15) Variable = Amp Peak 15(8q24.13) mutation analysis
D15V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 15(8Q24.13) WILD-TYPE" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
  "AMP PEAK 15(8Q24.13) MUTATED" "AMP PEAK 15(8Q24.13) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 15(8Q24.13) MUTATED"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 15(8Q24.13) WILD-TYPE"   "AMP PEAK 15(8Q24.13) MUTATED" 
                    TCGA-G3-A3CK 
"AMP PEAK 15(8Q24.13) WILD-TYPE" 
[1] "hr=" "1.6"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.13) MUTATED     11   27
  AMP PEAK 15(8Q24.13) WILD-TYPE   11   12
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  FEMALE                           11                             11
  MALE                             27                             12

Clustering(16) Variable = Amp Peak 16(10p15.1) mutation analysis
D16V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 16(10P15.1) MUTATED" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 16(10P15.1) MUTATED"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 16(10P15.1) WILD-TYPE"   "AMP PEAK 16(10P15.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 16(10P15.1) WILD-TYPE" "AMP PEAK 16(10P15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 16(10P15.1) WILD-TYPE" 
[1] "hr=" "1.5"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10P15.1) MUTATED      6    6
  AMP PEAK 16(10P15.1) WILD-TYPE   16   33
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  FEMALE                            6                             16
  MALE                              6                             33

Clustering(17) Variable = Amp Peak 17(11q13.3) mutation analysis
D17V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 17(11Q13.3) MUTATED"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 17(11Q13.3) MUTATED"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 17(11Q13.3) WILD-TYPE"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 17(11Q13.3) MUTATED"   "AMP PEAK 17(11Q13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
  "AMP PEAK 17(11Q13.3) MUTATED" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 17(11Q13.3) WILD-TYPE" "AMP PEAK 17(11Q13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 17(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q13.3) MUTATED      2    8
  AMP PEAK 17(11Q13.3) WILD-TYPE   20   31
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  FEMALE                            2                             20
  MALE                              8                             31

Clustering(18) Variable = Amp Peak 18(12q23.1) mutation analysis
D18V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 18(12Q23.1) MUTATED"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 18(12Q23.1) MUTATED"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 18(12Q23.1) MUTATED"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 18(12Q23.1) MUTATED" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 18(12Q23.1) WILD-TYPE"   "AMP PEAK 18(12Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 18(12Q23.1) WILD-TYPE" "AMP PEAK 18(12Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 18(12Q23.1) WILD-TYPE" 
[1] "hr=" "2.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12Q23.1) MUTATED      4    8
  AMP PEAK 18(12Q23.1) WILD-TYPE   18   31
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  FEMALE                            4                             18
  MALE                              8                             31

Clustering(19) Variable = Amp Peak 19(13q32.3) mutation analysis
D19V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 19(13Q32.3) MUTATED"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 19(13Q32.3) MUTATED"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 19(13Q32.3) MUTATED"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 19(13Q32.3) MUTATED" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 19(13Q32.3) WILD-TYPE"   "AMP PEAK 19(13Q32.3) MUTATED" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 19(13Q32.3) WILD-TYPE" "AMP PEAK 19(13Q32.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 19(13Q32.3) WILD-TYPE" 
[1] "hr=" "2.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q32.3) MUTATED      5    8
  AMP PEAK 19(13Q32.3) WILD-TYPE   17   31
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  FEMALE                            5                             17
  MALE                              8                             31

Clustering(20) Variable = Amp Peak 20(15q21.3) mutation analysis
D20V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(15Q21.3) MUTATED"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(15Q21.3) MUTATED"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 20(15Q21.3) MUTATED"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 20(15Q21.3) MUTATED" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 20(15Q21.3) WILD-TYPE"   "AMP PEAK 20(15Q21.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 20(15Q21.3) WILD-TYPE" "AMP PEAK 20(15Q21.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 20(15Q21.3) WILD-TYPE" 
[1] "hr=" "1.7"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(15Q21.3) MUTATED      7    5
  AMP PEAK 20(15Q21.3) WILD-TYPE   15   34
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  FEMALE                            7                             15
  MALE                              5                             34

Clustering(21) Variable = Amp Peak 21(15q26.3) mutation analysis
D21V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(15Q26.3) MUTATED"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(15Q26.3) MUTATED"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 21(15Q26.3) MUTATED"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "AMP PEAK 21(15Q26.3) MUTATED" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 21(15Q26.3) WILD-TYPE"   "AMP PEAK 21(15Q26.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 21(15Q26.3) WILD-TYPE" "AMP PEAK 21(15Q26.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 21(15Q26.3) WILD-TYPE" 
[1] "hr=" "1.6"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.3) MUTATED      6    6
  AMP PEAK 21(15Q26.3) WILD-TYPE   16   33
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  FEMALE                            6                             16
  MALE                              6                             33

Clustering(22) Variable = Amp Peak 22(17p11.2) mutation analysis
D22V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 22(17P11.2) MUTATED"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 22(17P11.2) MUTATED"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 22(17P11.2) MUTATED" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 22(17P11.2) MUTATED"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 22(17P11.2) WILD-TYPE"   "AMP PEAK 22(17P11.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 22(17P11.2) WILD-TYPE" "AMP PEAK 22(17P11.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"AMP PEAK 22(17P11.2) WILD-TYPE" 
[1] "hr=" "2"  
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17P11.2) MUTATED      6    5
  AMP PEAK 22(17P11.2) WILD-TYPE   16   34
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  FEMALE                            6                             16
  MALE                              5                             34

Clustering(23) Variable = Amp Peak 23(17q23.1) mutation analysis
D23V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 23(17Q23.1) MUTATED" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 23(17Q23.1) MUTATED"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 23(17Q23.1) WILD-TYPE" "AMP PEAK 23(17Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 23(17Q23.1) WILD-TYPE"   "AMP PEAK 23(17Q23.1) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 23(17Q23.1) MUTATED" 
[1] "hr=" "1.6"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q23.1) MUTATED     10   19
  AMP PEAK 23(17Q23.1) WILD-TYPE   12   20
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  FEMALE                           10                             12
  MALE                             19                             20

Clustering(24) Variable = Amp Peak 24(17q25.3) mutation analysis
D24V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-4072                     TCGA-BC-4073 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "AMP PEAK 24(17Q25.3) MUTATED" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "AMP PEAK 24(17Q25.3) MUTATED"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"AMP PEAK 24(17Q25.3) WILD-TYPE" "AMP PEAK 24(17Q25.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"AMP PEAK 24(17Q25.3) WILD-TYPE"   "AMP PEAK 24(17Q25.3) MUTATED" 
                    TCGA-G3-A3CK 
  "AMP PEAK 24(17Q25.3) MUTATED" 
[1] "hr=" "1.7"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17Q25.3) MUTATED      8   22
  AMP PEAK 24(17Q25.3) WILD-TYPE   14   17
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  FEMALE                            8                             14
  MALE                             22                             17

Clustering(25) Variable = Amp Peak 25(19q13.11) mutation analysis
D25V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 25(19Q13.11) MUTATED" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "AMP PEAK 25(19Q13.11) MUTATED"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"AMP PEAK 25(19Q13.11) WILD-TYPE"   "AMP PEAK 25(19Q13.11) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 25(19Q13.11) WILD-TYPE" "AMP PEAK 25(19Q13.11) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 25(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.11) MUTATED     11   11
  AMP PEAK 25(19Q13.11) WILD-TYPE   11   28
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  FEMALE                            11                              11
  MALE                              11                              28

Clustering(26) Variable = Amp Peak 26(20q13.13) mutation analysis
D26V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
  "AMP PEAK 26(20Q13.13) MUTATED"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"AMP PEAK 26(20Q13.13) WILD-TYPE"   "AMP PEAK 26(20Q13.13) MUTATED" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
  "AMP PEAK 26(20Q13.13) MUTATED" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"AMP PEAK 26(20Q13.13) WILD-TYPE" "AMP PEAK 26(20Q13.13) WILD-TYPE" 
                     TCGA-G3-A3CK 
"AMP PEAK 26(20Q13.13) WILD-TYPE" 
[1] "hr=" "1.9"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q13.13) MUTATED      8   12
  AMP PEAK 26(20Q13.13) WILD-TYPE   14   27
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  FEMALE                             8                              14
  MALE                              12                              27

Clustering(27) Variable = Del Peak  1(1p36.32) mutation analysis
D27V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK  1(1P36.32) WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED      9   20
  DEL PEAK  1(1P36.32) WILD-TYPE   13   19
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                            9                             13
  MALE                             20                             19

Clustering(28) Variable = Del Peak  2(2q22.1) mutation analysis
D28V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      3    4
  DEL PEAK  2(2Q22.1) WILD-TYPE   19   35
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  FEMALE                           3                            19
  MALE                             4                            35

Clustering(29) Variable = Del Peak  3(2q37.3) mutation analysis
D29V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  3(2Q37.3) WILD-TYPE"   "DEL PEAK  3(2Q37.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  3(2Q37.3) WILD-TYPE" "DEL PEAK  3(2Q37.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  3(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.7"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      4    7
  DEL PEAK  3(2Q37.3) WILD-TYPE   18   32
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  FEMALE                           4                            18
  MALE                             7                            32

Clustering(30) Variable = Del Peak  4(3p13) mutation analysis
D30V1, survival
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  4(3P13) MUTATED"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
  "DEL PEAK  4(3P13) MUTATED" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  4(3P13) WILD-TYPE"   "DEL PEAK  4(3P13) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  4(3P13) WILD-TYPE" "DEL PEAK  4(3P13) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  4(3P13) WILD-TYPE" 
[1] "hr=" "1.6"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) MUTATED      7    5
  DEL PEAK  4(3P13) WILD-TYPE   15   34
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  FEMALE                         7                          15
  MALE                           5                          34

Clustering(31) Variable = Del Peak  5(4q24) mutation analysis
D31V1, survival
                 TCGA-BC-4072                  TCGA-BC-4073 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A116                  TCGA-DD-A118 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  5(4Q24) MUTATED" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  5(4Q24) WILD-TYPE"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  5(4Q24) MUTATED"   "DEL PEAK  5(4Q24) MUTATED" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  5(4Q24) WILD-TYPE" "DEL PEAK  5(4Q24) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  5(4Q24) WILD-TYPE" 
[1] "hr=" "2.8"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q24) MUTATED      8   19
  DEL PEAK  5(4Q24) WILD-TYPE   14   20
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  FEMALE                         8                          14
  MALE                          19                          20

Clustering(32) Variable = Del Peak  6(4q35.1) mutation analysis
D32V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  6(4Q35.1) MUTATED" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  6(4Q35.1) WILD-TYPE"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK  6(4Q35.1) MUTATED"   "DEL PEAK  6(4Q35.1) MUTATED" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  6(4Q35.1) WILD-TYPE" "DEL PEAK  6(4Q35.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  6(4Q35.1) WILD-TYPE" 
[1] "hr=" "3.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED      9   18
  DEL PEAK  6(4Q35.1) WILD-TYPE   13   21
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  FEMALE                           9                            13
  MALE                            18                            21

Clustering(33) Variable = Del Peak  7(5q23.1) mutation analysis
D33V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK  7(5Q23.1) MUTATED" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK  7(5Q23.1) WILD-TYPE"   "DEL PEAK  7(5Q23.1) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  7(5Q23.1) WILD-TYPE" "DEL PEAK  7(5Q23.1) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  7(5Q23.1) WILD-TYPE" 
[1] "hr=" "1.6"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q23.1) MUTATED      1    6
  DEL PEAK  7(5Q23.1) WILD-TYPE   21   33
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  FEMALE                           1                            21
  MALE                             6                            33

Clustering(34) Variable = Del Peak  8(6q16.3) mutation analysis
D34V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK  8(6Q16.3) MUTATED" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK  8(6Q16.3) MUTATED"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK  8(6Q16.3) WILD-TYPE"   "DEL PEAK  8(6Q16.3) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK  8(6Q16.3) WILD-TYPE" "DEL PEAK  8(6Q16.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK  8(6Q16.3) WILD-TYPE" 
[1] "hr=" "2.1"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) MUTATED      8   12
  DEL PEAK  8(6Q16.3) WILD-TYPE   14   27
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  FEMALE                           8                            14
  MALE                            12                            27

Clustering(35) Variable = Del Peak  9(6q26) mutation analysis
D35V1, survival
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-4072                  TCGA-BC-4073 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Q                  TCGA-BC-A10R 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10S                  TCGA-BC-A10T 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10U                  TCGA-BC-A10W 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10X                  TCGA-BC-A10Y 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A10Z                  TCGA-BC-A110 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A112                  TCGA-BC-A216 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-BC-A217                  TCGA-BC-A3KF 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-BC-A3KG                  TCGA-CC-5258 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-CC-5263                  TCGA-DD-A113 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A114                  TCGA-DD-A115 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A116                  TCGA-DD-A118 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A119                  TCGA-DD-A11A 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11B                  TCGA-DD-A11C 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A11D                  TCGA-DD-A1E9 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-DD-A1EC                  TCGA-DD-A1EL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A12J                  TCGA-EP-A26S 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KA                  TCGA-EP-A2KB 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A2KC                  TCGA-EP-A3JL 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-EP-A3RK                  TCGA-ES-A2HS 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-ES-A2HT                  TCGA-FV-A2QR 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25S                  TCGA-G3-A25T 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25U                  TCGA-G3-A25V 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A25W                  TCGA-G3-A25X 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-G3-A25Y                  TCGA-G3-A25Z 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CG                  TCGA-G3-A3CH 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CI                  TCGA-G3-A3CJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-G3-A3CK 
"DEL PEAK  9(6Q26) WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q26) MUTATED      7   14
  DEL PEAK  9(6Q26) WILD-TYPE   15   25
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  FEMALE                         7                          15
  MALE                          14                          25

Clustering(36) Variable = Del Peak 10(8p23.2) mutation analysis
D36V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 10(8P23.2) WILD-TYPE" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
  "DEL PEAK 10(8P23.2) MUTATED"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
  "DEL PEAK 10(8P23.2) MUTATED" "DEL PEAK 10(8P23.2) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 10(8P23.2) WILD-TYPE"   "DEL PEAK 10(8P23.2) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 10(8P23.2) WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) MUTATED     12   28
  DEL PEAK 10(8P23.2) WILD-TYPE   10   11
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  FEMALE                          12                            10
  MALE                            28                            11

Clustering(37) Variable = Del Peak 11(9p21.3) mutation analysis
D37V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
  "DEL PEAK 11(9P21.3) MUTATED" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
  "DEL PEAK 11(9P21.3) MUTATED"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 11(9P21.3) WILD-TYPE" "DEL PEAK 11(9P21.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 11(9P21.3) WILD-TYPE"   "DEL PEAK 11(9P21.3) MUTATED" 
                   TCGA-G3-A3CK 
"DEL PEAK 11(9P21.3) WILD-TYPE" 
[1] "hr=" "1.5"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) MUTATED      9   18
  DEL PEAK 11(9P21.3) WILD-TYPE   13   21
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  FEMALE                           9                            13
  MALE                            18                            21

Clustering(38) Variable = Del Peak 12(10p15.3) mutation analysis
D38V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 12(10P15.3) MUTATED" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 12(10P15.3) WILD-TYPE"   "DEL PEAK 12(10P15.3) MUTATED" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 12(10P15.3) WILD-TYPE" "DEL PEAK 12(10P15.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 12(10P15.3) WILD-TYPE" 
[1] "hr=" "4.9"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) MUTATED      0    4
  DEL PEAK 12(10P15.3) WILD-TYPE   22   35
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  FEMALE                            0                             22
  MALE                              4                             35

Clustering(39) Variable = Del Peak 13(10q23.31) mutation analysis
D39V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 13(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED      9   13
  DEL PEAK 13(10Q23.31) WILD-TYPE   13   26
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  FEMALE                             9                              13
  MALE                              13                              26

Clustering(40) Variable = Del Peak 14(10q24.33) mutation analysis
D40V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 14(10Q24.33) MUTATED"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 14(10Q24.33) WILD-TYPE"   "DEL PEAK 14(10Q24.33) MUTATED" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 14(10Q24.33) MUTATED" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 14(10Q24.33) WILD-TYPE" "DEL PEAK 14(10Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 14(10Q24.33) WILD-TYPE" 
[1] "hr=" "1"  
D40V2, continuous
D40V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) MUTATED      7   12
  DEL PEAK 14(10Q24.33) WILD-TYPE   15   27
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  FEMALE                             7                              15
  MALE                              12                              27

Clustering(41) Variable = Del Peak 15(11q14.1) mutation analysis
D41V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 15(11Q14.1) MUTATED"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 15(11Q14.1) WILD-TYPE"   "DEL PEAK 15(11Q14.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 15(11Q14.1) MUTATED" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 15(11Q14.1) WILD-TYPE" "DEL PEAK 15(11Q14.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 15(11Q14.1) WILD-TYPE" 
[1] "hr=" "1"  
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) MUTATED      4    9
  DEL PEAK 15(11Q14.1) WILD-TYPE   18   30
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  FEMALE                            4                             18
  MALE                              9                             30

Clustering(42) Variable = Del Peak 16(12p12.1) mutation analysis
D42V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 16(12P12.1) MUTATED"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 16(12P12.1) MUTATED"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 16(12P12.1) MUTATED"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 16(12P12.1) MUTATED" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 16(12P12.1) WILD-TYPE"   "DEL PEAK 16(12P12.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 16(12P12.1) WILD-TYPE" "DEL PEAK 16(12P12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 16(12P12.1) WILD-TYPE" 
[1] "hr=" "3.4"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(12P12.1) MUTATED      3    8
  DEL PEAK 16(12P12.1) WILD-TYPE   19   31
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  FEMALE                            3                             19
  MALE                              8                             31

Clustering(43) Variable = Del Peak 17(12q24.33) mutation analysis
D43V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"   "DEL PEAK 17(12Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"   "DEL PEAK 17(12Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A114                      TCGA-DD-A115 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 17(12Q24.33) WILD-TYPE"   "DEL PEAK 17(12Q24.33) MUTATED" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
  "DEL PEAK 17(12Q24.33) MUTATED" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 17(12Q24.33) WILD-TYPE" "DEL PEAK 17(12Q24.33) WILD-TYPE" 
                     TCGA-G3-A3CK 
"DEL PEAK 17(12Q24.33) WILD-TYPE" 
[1] "hr=" "2.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.33) MUTATED      5    3
  DEL PEAK 17(12Q24.33) WILD-TYPE   17   36
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  FEMALE                             5                              17
  MALE                               3                              36

Clustering(44) Variable = Del Peak 18(13q14.2) mutation analysis
D44V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 18(13Q14.2) MUTATED"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 18(13Q14.2) MUTATED" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 18(13Q14.2) WILD-TYPE"   "DEL PEAK 18(13Q14.2) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 18(13Q14.2) WILD-TYPE" "DEL PEAK 18(13Q14.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 18(13Q14.2) WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(13Q14.2) MUTATED     12   19
  DEL PEAK 18(13Q14.2) WILD-TYPE   10   20
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  FEMALE                           12                             10
  MALE                             19                             20

Clustering(45) Variable = Del Peak 19(14q23.3) mutation analysis
D45V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 19(14Q23.3) MUTATED"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 19(14Q23.3) MUTATED" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 19(14Q23.3) WILD-TYPE"   "DEL PEAK 19(14Q23.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 19(14Q23.3) WILD-TYPE" "DEL PEAK 19(14Q23.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 19(14Q23.3) WILD-TYPE" 
[1] "hr=" "2.7"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(14Q23.3) MUTATED      9   16
  DEL PEAK 19(14Q23.3) WILD-TYPE   13   23
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  FEMALE                            9                             13
  MALE                             16                             23

Clustering(46) Variable = Del Peak 20(15q15.1) mutation analysis
D46V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 20(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.7"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) MUTATED      3   10
  DEL PEAK 20(15Q15.1) WILD-TYPE   19   29
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  FEMALE                            3                             19
  MALE                             10                             29

Clustering(47) Variable = Del Peak 21(16q23.1) mutation analysis
D47V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.7"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED     11   16
  DEL PEAK 21(16Q23.1) WILD-TYPE   11   23
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  FEMALE                           11                             11
  MALE                             16                             23

Clustering(48) Variable = Del Peak 22(17p12) mutation analysis
D48V1, survival
                  TCGA-BC-4072                   TCGA-BC-4073 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A112                   TCGA-BC-A216 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-CC-5263                   TCGA-DD-A113 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A114                   TCGA-DD-A115 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A116                   TCGA-DD-A118 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A119                   TCGA-DD-A11A 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11B                   TCGA-DD-A11C 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A11D                   TCGA-DD-A1E9 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EC                   TCGA-DD-A1EL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25S                   TCGA-G3-A25T 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25U                   TCGA-G3-A25V 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25W                   TCGA-G3-A25X 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25Y                   TCGA-G3-A25Z 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CG                   TCGA-G3-A3CH 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CI                   TCGA-G3-A3CJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-4072                   TCGA-BC-4073 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A112                   TCGA-BC-A216 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-CC-5263                   TCGA-DD-A113 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A114                   TCGA-DD-A115 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A116                   TCGA-DD-A118 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A119                   TCGA-DD-A11A 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11B                   TCGA-DD-A11C 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A11D                   TCGA-DD-A1E9 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EC                   TCGA-DD-A1EL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25S                   TCGA-G3-A25T 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25U                   TCGA-G3-A25V 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25W                   TCGA-G3-A25X 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25Y                   TCGA-G3-A25Z 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CG                   TCGA-G3-A3CH 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CI                   TCGA-G3-A3CJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-4072                   TCGA-BC-4073 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Q                   TCGA-BC-A10R 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10S                   TCGA-BC-A10T 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10U                   TCGA-BC-A10W 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A10X                   TCGA-BC-A10Y 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A10Z                   TCGA-BC-A110 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A112                   TCGA-BC-A216 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BC-A217                   TCGA-BC-A3KF 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-BC-A3KG                   TCGA-CC-5258 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-CC-5263                   TCGA-DD-A113 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A114                   TCGA-DD-A115 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A116                   TCGA-DD-A118 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A119                   TCGA-DD-A11A 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A11B                   TCGA-DD-A11C 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DD-A11D                   TCGA-DD-A1E9 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DD-A1EC                   TCGA-DD-A1EL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EP-A12J                   TCGA-EP-A26S 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KA                   TCGA-EP-A2KB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A2KC                   TCGA-EP-A3JL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EP-A3RK                   TCGA-ES-A2HS 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-ES-A2HT                   TCGA-FV-A2QR 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25S                   TCGA-G3-A25T 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25U                   TCGA-G3-A25V 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A25W                   TCGA-G3-A25X 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A25Y                   TCGA-G3-A25Z 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CG                   TCGA-G3-A3CH 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-G3-A3CI                   TCGA-G3-A3CJ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-G3-A3CK 
"DEL PEAK 22(17P12) WILD-TYPE" 
[1] "hr=" "1.7"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED     13   24
  DEL PEAK 22(17P12) WILD-TYPE    9   15
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  FEMALE                         13                            9
  MALE                           24                           15

Clustering(49) Variable = Del Peak 23(18q21.2) mutation analysis
D49V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 23(18Q21.2) MUTATED"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 23(18Q21.2) WILD-TYPE"   "DEL PEAK 23(18Q21.2) MUTATED" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 23(18Q21.2) MUTATED" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 23(18Q21.2) WILD-TYPE" "DEL PEAK 23(18Q21.2) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 23(18Q21.2) WILD-TYPE" 
[1] "hr=" "2.4"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED      5    7
  DEL PEAK 23(18Q21.2) WILD-TYPE   17   32
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  FEMALE                            5                             17
  MALE                              7                             32

Clustering(50) Variable = Del Peak 24(19p13.3) mutation analysis
D50V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-CC-5263                     TCGA-DD-A113 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 24(19P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED      4   11
  DEL PEAK 24(19P13.3) WILD-TYPE   18   28
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  FEMALE                            4                             18
  MALE                             11                             28

Clustering(51) Variable = Del Peak 25(22q12.1) mutation analysis
D51V1, survival
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-4072                     TCGA-BC-4073 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Q                     TCGA-BC-A10R 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10S                     TCGA-BC-A10T 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A10U                     TCGA-BC-A10W 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10X                     TCGA-BC-A10Y 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A10Z                     TCGA-BC-A110 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A112                     TCGA-BC-A216 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-BC-A217                     TCGA-BC-A3KF 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-BC-A3KG                     TCGA-CC-5258 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-CC-5263                     TCGA-DD-A113 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A114                     TCGA-DD-A115 
  "DEL PEAK 25(22Q12.1) MUTATED" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A116                     TCGA-DD-A118 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A119                     TCGA-DD-A11A 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-DD-A11B                     TCGA-DD-A11C 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A11D                     TCGA-DD-A1E9 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-DD-A1EC                     TCGA-DD-A1EL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A12J                     TCGA-EP-A26S 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A2KA                     TCGA-EP-A2KB 
"DEL PEAK 25(22Q12.1) WILD-TYPE"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-EP-A2KC                     TCGA-EP-A3JL 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-EP-A3RK                     TCGA-ES-A2HS 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-ES-A2HT                     TCGA-FV-A2QR 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25S                     TCGA-G3-A25T 
  "DEL PEAK 25(22Q12.1) MUTATED"   "DEL PEAK 25(22Q12.1) MUTATED" 
                    TCGA-G3-A25U                     TCGA-G3-A25V 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25W                     TCGA-G3-A25X 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A25Y                     TCGA-G3-A25Z 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CG                     TCGA-G3-A3CH 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CI                     TCGA-G3-A3CJ 
"DEL PEAK 25(22Q12.1) WILD-TYPE" "DEL PEAK 25(22Q12.1) WILD-TYPE" 
                    TCGA-G3-A3CK 
"DEL PEAK 25(22Q12.1) WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(22Q12.1) MUTATED      7    6
  DEL PEAK 25(22Q12.1) WILD-TYPE   15   33
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  FEMALE                            7                             15
  MALE                              6                             33

Clustering(52) Variable = Del Peak 26(22q13.32) mutation analysis
D52V1, survival
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK 
"DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK 
"DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-4072                      TCGA-BC-4073 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10Q                      TCGA-BC-A10R 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10S                      TCGA-BC-A10T 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10U                      TCGA-BC-A10W 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A10X                      TCGA-BC-A10Y 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A10Z                      TCGA-BC-A110 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A112                      TCGA-BC-A216 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-BC-A217                      TCGA-BC-A3KF 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-BC-A3KG                      TCGA-CC-5258 
  "DEL PEAK 26(22Q13.32) MUTATED" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-CC-5263                      TCGA-DD-A113 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A114                      TCGA-DD-A115 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-DD-A116                      TCGA-DD-A118 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A119                      TCGA-DD-A11A 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11B                      TCGA-DD-A11C 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A11D                      TCGA-DD-A1E9 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-DD-A1EC                      TCGA-DD-A1EL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A12J                      TCGA-EP-A26S 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A2KA                      TCGA-EP-A2KB 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-EP-A2KC                      TCGA-EP-A3JL 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-EP-A3RK                      TCGA-ES-A2HS 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-ES-A2HT                      TCGA-FV-A2QR 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25S                      TCGA-G3-A25T 
  "DEL PEAK 26(22Q13.32) MUTATED"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A25U                      TCGA-G3-A25V 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25W                      TCGA-G3-A25X 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A25Y                      TCGA-G3-A25Z 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CG                      TCGA-G3-A3CH 
"DEL PEAK 26(22Q13.32) WILD-TYPE" "DEL PEAK 26(22Q13.32) WILD-TYPE" 
                     TCGA-G3-A3CI                      TCGA-G3-A3CJ 
"DEL PEAK 26(22Q13.32) WILD-TYPE"   "DEL PEAK 26(22Q13.32) MUTATED" 
                     TCGA-G3-A3CK 
"DEL PEAK 26(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.3"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(22Q13.32) MUTATED      8    9
  DEL PEAK 26(22Q13.32) WILD-TYPE   14   30
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  FEMALE                             8                              14
  MALE                               9                              30

Clustering(53) Variable = Del Peak 27(Xq27.3) mutation analysis
D53V1, survival
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-4072                    TCGA-BC-4073 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Q                    TCGA-BC-A10R 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A10S                    TCGA-BC-A10T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10U                    TCGA-BC-A10W 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10X                    TCGA-BC-A10Y 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A10Z                    TCGA-BC-A110 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A112                    TCGA-BC-A216 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-BC-A217                    TCGA-BC-A3KF 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-BC-A3KG                    TCGA-CC-5258 
  "DEL PEAK 27(XQ27.3) MUTATED"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-CC-5263                    TCGA-DD-A113 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A114                    TCGA-DD-A115 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-DD-A116                    TCGA-DD-A118 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A119                    TCGA-DD-A11A 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11B                    TCGA-DD-A11C 
  "DEL PEAK 27(XQ27.3) MUTATED" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A11D                    TCGA-DD-A1E9 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-DD-A1EC                    TCGA-DD-A1EL 
"DEL PEAK 27(XQ27.3) WILD-TYPE"   "DEL PEAK 27(XQ27.3) MUTATED" 
                   TCGA-EP-A12J                    TCGA-EP-A26S 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KA                    TCGA-EP-A2KB 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A2KC                    TCGA-EP-A3JL 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-EP-A3RK                    TCGA-ES-A2HS 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-ES-A2HT                    TCGA-FV-A2QR 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25S                    TCGA-G3-A25T 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25U                    TCGA-G3-A25V 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25W                    TCGA-G3-A25X 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A25Y                    TCGA-G3-A25Z 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CG                    TCGA-G3-A3CH 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CI                    TCGA-G3-A3CJ 
"DEL PEAK 27(XQ27.3) WILD-TYPE" "DEL PEAK 27(XQ27.3) WILD-TYPE" 
                   TCGA-G3-A3CK 
"DEL PEAK 27(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.6"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ27.3) MUTATED      5    6
  DEL PEAK 27(XQ27.3) WILD-TYPE   17   33
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  FEMALE                           5                            17
  MALE                             6                            33
           V1.D              V2              V3 
"Time to Death"           "AGE"        "GENDER" 
> q(save="no")
