
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUAD-TP/2404221/1.GDAC_mergedClustering.Finished/LUAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD-TP/2330215/1.GDAC_clinicalDataPicker.Finished/LUAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=333, in cluster file=408, common to both=331
[1]  10 331
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
 5  9 12  6 
 1  2  3  4 
 5  9 12  6 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 7 13 12 
 1  2  3 
 7 13 12 
[1] "CN_CNMF"
[1] 3
  1   2   3   4 
 98 124  62  43 
  1   2   3   4 
 98 124  62  43 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
67 96 98 
 1  2  3 
67 96 98 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
90 75 71 
 1  2  3 
90 75 71 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
23 73 84 56 
 1  2  3  4 
23 73 84 56 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5 
94 67 49 74 40 
 1  2  3  4  5 
94 67 49 74 40 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
139  97  88 
  1   2   3 
139  97  88 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
125 133  63 
  1   2   3 
125 133  63 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 70 144  40  67 
  1   2   3   4 
 70 144  40  67 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 331 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
         574          581          400          529          103          480 
TCGA-44-2664 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
         383          400           97          246          311          253 
TCGA-44-3917 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
         392          196          189          140          106          498 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
         208            9          102          302          236           95 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
         165           82         1938           NA         1110           NA 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
         298          162          153           50          557           NA 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
         531          535          418          259           98         2318 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
          NA           NA           NA         1081         1421          428 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
         999          268          896           NA         1314          457 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 TCGA-50-5044 
         369          395          150            1           NA           NA 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        2174         1485          455          785          297         1499 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
         245          282          267         1091         2369          653 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
         257          460          285          135          373          349 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
          NA           NA           NA           NA           NA           NA 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        1015           NA          255         1068          970          418 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
         701         1178         1479         1374           87            2 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
         992           24           NA         1238           NA           28 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        1475           NA           NA           NA           67           NA 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
          NA         1826           NA         1233         2161         1170 
TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 
          61           18           34           NA            4           95 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
          40           39           31           31           24           54 
TCGA-55-7816 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
          31           19           16          197           21            3 
TCGA-55-8089 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
          92         1728          628         1189         1685         1126 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
          NA         2550            3          926          507         1202 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
         223           30           60           18           62           18 
TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
          NA           27           21          422          154          186 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
         690          414          129          230          184           70 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
          89          382           99           76          128           61 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        1599          711          911          617          467           14 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-75-5122 
          40          122           38          621          519           NA 
TCGA-75-5125 TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6206 TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7027 TCGA-75-7030 TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
          NA           NA         1093           NA         1201          760 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
          NA           NA           NA           NA         1220          678 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
         214           NA         6812           NA           NA           NA 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
          NA           NA           NA          327          881           NA 
TCGA-78-7633 TCGA-80-5607 TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 
         994           NA           NA           NA          420           NA 
TCGA-86-6851 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-86-7953 
          NA           11           27            7           NA           34 
TCGA-86-7954 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
          NA           19           10           24           43           26 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8281 TCGA-91-6828 TCGA-91-6829 
          23           21           16           NA           37           NA 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 
           1           39           35           11           NA          819 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
         127           28           31          297          127          185 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
          34            2          163           21           40          132 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
         963         1435         1476         1331          263          181 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
          NA           22          181           NA          146           15 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
         250          427          458           44          169          153 
TCGA-J2-8194 
         113 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=81,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=205,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=78,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=53,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "STOPPEDSMOKINGYEAR"                    
[12] "TOBACCOSMOKINGHISTORYINDICATOR"        
[13] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
173  72  62  18 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 331 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 96 189  26  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 96 189  26  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 96 189  26  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 96 189  26  17 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
200  67  53   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  200    67    54 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
200  67  53   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  200    67    54 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
173  72  62  18 
[1] "table(vv)"
vv
  I  II III  IV 
173  72  62  18 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
173  72  62  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
173  72  62  18 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=78, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=47, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=53, binary=FALSE, numeric=TRUE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1  4  0
  subtype2  8  1
  subtype3 11  1
  subtype4  4  2
subtype1 subtype2 subtype3 subtype4 
       4        9       12        6 
subtype1 subtype2 subtype3 subtype4 
       0        1        1        2 
$subtype1
TCGA-35-4123 TCGA-44-2665 TCGA-44-3919 TCGA-55-1595 
        5.95        13.15         6.21        48.62 

$subtype2
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-44-2656 TCGA-44-2662 TCGA-44-2668 
       38.07         3.98         7.36        19.10        15.78         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-64-1676 
        8.32         6.44        56.81 

$subtype3
TCGA-35-3615 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 
        0.46        18.87        13.15        17.39         3.39         3.19 
TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        4.60        37.02         0.99         0.59         2.04         0.59 

$subtype4
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 TCGA-67-3771 
       23.05        38.73        45.17        20.65        39.09         1.97 

subtype1 subtype2 subtype3 subtype4 
    5.95     3.98     0.46     1.97 
subtype1 subtype2 subtype3 subtype4 
   48.62    56.81    37.02    45.17 
subtype1 subtype2 subtype3 subtype4 
    9.68     8.32     3.29    30.89 
[1] "6.0 - 48.6 (9.7)"  "4.0 - 56.8 (8.3)"  "0.5 - 37.0 (3.3)" 
[4] "2.0 - 45.2 (30.9)"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 3 2
  subtype2 3 6
  subtype3 9 3
  subtype4 3 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    2
  subtype2    3    6
  subtype3    9    3
  subtype4    3    3
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        3        3        9        3
  MALE          2        6        3        3
D1V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype4"              
clus
subtype1 subtype2 subtype4 
       1        1        1 
character(0)
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0        4        9       11        6
  M1        1        0        1        0
D1V9, multiclass
D1V10, binary
          cls
clus        0  1
  subtype1  0  5
  subtype2  0  9
  subtype3  1 11
  subtype4  0  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    5
  subtype2    0    9
  subtype3    1   11
  subtype4    0    6
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES        5        9       11        6
D1V11, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 subtype4 
       2        9        6        3 
 [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[13] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
D1V12, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
       2        6        5        2 
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
D1V13, multiclass
D1V14, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 subtype4 
       2        6        6        5 
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
[13] "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1  5  2
  subtype2 12  1
  subtype3 10  1
subtype1 subtype2 subtype3 
       7       13       11 
subtype1 subtype2 subtype3 
       2        1        1 
$subtype1
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 
       23.05        38.73        48.62        45.17        20.65        39.09 
TCGA-67-3771 
        1.97 

$subtype2
TCGA-35-3615 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        0.46        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        3.19         4.60        37.02         0.99         0.59         2.04 
TCGA-67-3774 
        0.59 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-35-4123 TCGA-44-2662 TCGA-44-2665 
       38.07         3.98         7.36         5.95        15.78        13.15 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-64-1676 
        8.09         8.32         6.44         6.21        56.81 

subtype1 subtype2 subtype3 
    1.97     0.46     3.98 
subtype1 subtype2 subtype3 
   48.62    37.02    56.81 
subtype1 subtype2 subtype3 
   38.73     3.39     8.09 
[1] "2.0 - 48.6 (38.7)" "0.5 - 37.0 (3.4)"  "4.0 - 56.8 (8.1)" 
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 4 3
  subtype2 9 4
  subtype3 5 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    3
  subtype2    9    4
  subtype3    5    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        4        9        5
  MALE          3        4        7
D2V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype3"              
clus
subtype1 subtype3 
       1        2 
character(0)
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0        7       12       11
  M1        0        1        1
D2V9, multiclass
D2V10, binary
          cls
clus        0  1
  subtype1  0  7
  subtype2  1 12
  subtype3  0 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    7
  subtype2    1   12
  subtype3    0   12
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        0
  YES        7       12       12
D2V11, continuous
D2V12, continuous
D2V13, multiclass
D2V14, continuous

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 61 26
  subtype2 81 30
  subtype3 34 19
  subtype4 33  7
subtype1 subtype2 subtype3 subtype4 
      87      111       53       40 
subtype1 subtype2 subtype3 subtype4 
      26       30       19        7 
$subtype1
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4426 TCGA-05-5423 
       47.05         8.02        20.05        29.95        26.01         4.96 
TCGA-05-5715 TCGA-35-4123 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
        2.04         5.95        28.37        44.61         5.19        19.10 
TCGA-44-2659 TCGA-44-2662 TCGA-44-3919 TCGA-44-5645 TCGA-44-6775 TCGA-44-6777 
       17.39        15.78         6.21         6.84         2.70        32.45 
TCGA-44-7662 TCGA-44-8117 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
        1.64         8.52        28.57        12.66        46.72        14.07 
TCGA-49-4512 TCGA-50-5045 TCGA-50-5066 TCGA-50-5930 TCGA-50-5933 TCGA-50-5941 
       29.75        71.47         9.76         9.27        77.88         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       12.26        11.47         3.88        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-6543 TCGA-55-6712 TCGA-55-6972 TCGA-55-6979 
       23.05        48.62         0.07         0.79        48.49         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 TCGA-55-7281 TCGA-55-7283 
        2.20        45.34        32.71        40.54         0.59         1.12 
TCGA-55-7573 TCGA-55-7727 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5778 
        0.13         1.02        56.81        55.40        44.38        30.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 TCGA-71-6725 TCGA-73-4675 TCGA-73-4676 
        0.99         0.59        13.87         2.01         1.32         4.01 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7155 TCGA-78-7163 
       17.06       163.10        27.16        19.27        38.50       223.96 
TCGA-78-7535 TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 TCGA-86-7953 
       31.20        10.75        10.55        13.81         0.89         1.12 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 TCGA-91-6847 
        0.33         0.79         1.41         0.69         0.53        26.93 
TCGA-91-6848 TCGA-95-7039 TCGA-95-7947 TCGA-97-7546 TCGA-97-7554 TCGA-97-7937 
        4.18         1.12         1.32        31.66         8.65         5.95 
TCGA-99-8025 TCGA-J2-8192 TCGA-J2-8194 
       14.04         5.03         3.72 

$subtype2
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4430 TCGA-05-4434 
       38.07        14.01         9.96        24.03        25.02        15.02 
TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        1.02         0.99         0.46        47.61        85.32        37.71 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       26.30        18.87        13.15         3.39        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
       10.22         8.32         4.60         3.35         9.93         3.12 
TCGA-44-6776 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
       63.72         9.80         5.03        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       28.11        35.54        32.84        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 
       12.99         4.93        20.48        48.82        25.81        49.28 
TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6595 TCGA-50-6673 TCGA-53-7626 
       15.12         4.44        42.31         6.21         0.72        31.89 
TCGA-55-6642 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6983 TCGA-55-6984 
       32.61         0.92         3.88         5.46        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 
       71.05        38.47         3.12         1.28         0.79         1.78 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8089 TCGA-64-1680 TCGA-64-5781 TCGA-64-5815 
        0.69         0.10         3.02        37.02        39.52         7.33 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89         0.69         6.12        22.68 
TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-8253 TCGA-69-8254 TCGA-73-4658 
        4.24         6.05         2.30         3.25         2.50        52.57 
TCGA-73-4659 TCGA-73-4677 TCGA-73-7498 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 
       23.38         1.25        20.42        20.58        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7537 
       32.09         5.88        22.29       104.15         8.48        53.33 
TCGA-78-7540 TCGA-78-7633 TCGA-86-8076 TCGA-86-8278 TCGA-91-6830 TCGA-91-6835 
       28.96        32.68         0.85         0.76         0.03         1.15 
TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7944 TCGA-97-7547 TCGA-97-7552 
        0.92         9.76         4.18         0.69        47.18        48.53 
TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
       43.76         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        8.22        15.06         1.45 

$subtype3
TCGA-05-4250 TCGA-05-4382 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4427 
        3.98        19.92         2.96        14.93         8.98        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-35-4122 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       25.02        24.00         7.36        49.02        35.28        11.64 
TCGA-44-2668 TCGA-44-5643 TCGA-44-5644 TCGA-44-6779 TCGA-44-7660 TCGA-44-7667 
        8.09         3.48        16.37        16.41         5.33        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-49-4507 TCGA-49-4510 TCGA-50-5072 TCGA-50-5931 
       18.87        17.46         8.81        29.46         8.05         8.78 
TCGA-50-5936 TCGA-50-6592 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-7576 
        8.45        25.51        35.11        38.73        45.17         1.32 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-64-1678 TCGA-64-5775 TCGA-69-7760 
        1.02         0.53         6.48        39.09         0.10         5.06 
TCGA-69-7980 TCGA-69-8255 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7150 
       12.56         4.21        20.28         0.46         5.65        21.86 
TCGA-78-7154 TCGA-78-7167 TCGA-78-7220 TCGA-86-7701 TCGA-86-7713 TCGA-91-6831 
       19.50        88.11        26.53         0.36         0.23         1.28 
TCGA-91-6836 TCGA-91-7771 TCGA-93-8067 TCGA-95-7567 TCGA-99-8033 
        0.36         1.02         6.08         5.36         5.56 

$subtype4
TCGA-05-4390 TCGA-05-4424 TCGA-05-5425 TCGA-35-5375 TCGA-44-3918 TCGA-44-6144 
       37.02        30.02         2.96         8.68         6.44         0.30 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6778 TCGA-44-8119 TCGA-49-6761 TCGA-50-5051 
        7.76         5.42        36.49         3.22         0.03        14.96 
TCGA-50-5932 TCGA-50-5935 TCGA-50-7109 TCGA-53-7813 TCGA-55-5899 TCGA-55-6968 
       35.87        21.47         8.38        13.74         2.86        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-7903 TCGA-64-1677 TCGA-64-5774 TCGA-64-5779 
       40.70        15.25         0.62        20.65        83.84        16.67 
TCGA-67-3771 TCGA-69-7764 TCGA-69-7973 TCGA-69-7979 TCGA-73-4662 TCGA-73-4668 
        1.97        13.61         7.56         2.93        29.95        15.35 
TCGA-78-7149 TCGA-78-7159 TCGA-78-7161 TCGA-78-7536 TCGA-86-8054 TCGA-91-6828 
       35.93        40.11         7.04         8.02         0.62         1.22 
TCGA-91-6829 TCGA-95-7043 TCGA-95-7948 TCGA-97-8179 
       41.33         0.07         4.34         0.49 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.03     0.10     0.03 
subtype1 subtype2 subtype3 subtype4 
  223.96   104.15    88.11    83.84 
subtype1 subtype2 subtype3 subtype4 
   11.05     9.96     8.81     8.53 
[1] "0.1 - 224.0 (11.1)" "0.0 - 104.2 (10.0)" "0.1 - 88.1 (8.8)"  
[4] "0.0 - 83.8 (8.5)"  
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype4"
 [25] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype2"
 [61] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [97] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[169] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[205] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype2"
[271] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype4"
 [25] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype2"
 [61] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [97] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[169] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[205] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype2"
[271] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype4"
 [25] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype2"
 [61] "subtype4" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [97] "subtype2" "subtype1" "subtype2" "subtype4" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[109] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[127] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[133] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[139] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[169] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype4" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[205] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[217] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype4"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype2"
[271] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[277] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[289] "subtype3" "subtype1" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 60 38
  subtype2 70 54
  subtype3 28 34
  subtype4 21 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   60   38
  subtype2   70   54
  subtype3   28   34
  subtype4   21   22
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       60       70       28       21
  MALE         38       54       34       22
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
          cls
clus         0   1
  subtype1   6  92
  subtype2   6 118
  subtype3   4  58
  subtype4   4  39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   92
  subtype2    6  118
  subtype3    4   58
  subtype4    4   39
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         6        6        4        4
  YES       92      118       58       39
D3V11, continuous
D3V12, continuous
D3V13, multiclass
D3V14, continuous

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 46 12
  subtype2 68 18
  subtype3 56 31
subtype1 subtype2 subtype3 
      58       86       87 
subtype1 subtype2 subtype3 
      12       18       31 
$subtype1
TCGA-05-4384 TCGA-05-5423 TCGA-05-5715 TCGA-38-6178 TCGA-44-5645 TCGA-44-6146 
       14.01         4.96         2.04         5.19         6.84         9.93 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 TCGA-49-4512 TCGA-50-5935 
        3.12         2.70        63.72         9.80        29.75        21.47 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6594 TCGA-53-7626 TCGA-55-6543 TCGA-55-6970 
        4.44        12.26        12.16        31.89         0.07        15.25 
TCGA-55-6972 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7573 
       48.49        60.03        40.54        71.05         2.01         0.13 
TCGA-55-7725 TCGA-64-1681 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.28        44.38        30.44         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-8253 TCGA-69-8254 TCGA-73-7498 
        5.06        22.68        13.61         3.25         2.50        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7148 TCGA-78-7156 TCGA-78-7162 TCGA-78-7163 
       17.06       163.10        20.58        32.09       104.15       223.96 
TCGA-78-7537 TCGA-86-8075 TCGA-86-8278 TCGA-86-8280 TCGA-91-6849 TCGA-93-7348 
       53.33         1.41         0.76         0.53         0.92         4.18 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
        4.34        31.66        47.18         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-J2-8192 
        5.36         4.80         8.22         5.03 

$subtype2
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-05-4417 TCGA-05-4427 TCGA-05-4433 
       37.02         9.96        20.05        14.93        26.01        24.00 
TCGA-05-5429 TCGA-35-5375 TCGA-38-4632 TCGA-44-5644 TCGA-44-6147 TCGA-44-7667 
        0.99         8.68        44.61        16.37         7.76        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 
       18.87        17.46        17.59         8.52         3.22        28.57 
TCGA-49-6761 TCGA-50-5051 TCGA-50-5932 TCGA-50-5946 TCGA-50-6597 TCGA-50-6673 
        0.03        14.96        35.87        11.47        33.37         0.72 
TCGA-50-7109 TCGA-53-7813 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-7281 
        8.38        13.74         2.86        32.61        42.48         0.59 
TCGA-55-7283 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.12         1.32         1.02         0.62         0.53         6.48 
TCGA-55-7914 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-69-7765 TCGA-69-7973 
        0.10        83.84         0.10        16.67         4.24         7.56 
TCGA-69-7974 TCGA-69-7979 TCGA-69-7980 TCGA-71-6725 TCGA-73-4676 TCGA-78-7145 
        6.05         2.93        12.56         2.01         4.01        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7535 
       38.50         5.88        40.11         7.04        88.11        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7701 TCGA-86-7713 
        8.02        10.75        28.96        32.68         0.36         0.23 
TCGA-86-8054 TCGA-86-8074 TCGA-86-8279 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.62         0.79         0.69         1.22        41.33         1.28 
TCGA-91-6836 TCGA-91-6847 TCGA-91-7771 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        0.36        26.93         1.02         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7947 TCGA-97-7554 TCGA-97-7937 TCGA-97-8179 TCGA-99-8025 
        5.36         1.32         8.65         5.95         0.49        14.04 
TCGA-99-8032 TCGA-J2-8194 
        1.45         3.72 

$subtype3
TCGA-05-4415 TCGA-05-4424 TCGA-05-5420 TCGA-05-5425 TCGA-38-4631 TCGA-38-7271 
        2.96        30.02         1.02         2.96        11.64        26.30 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 
        3.48         0.30         3.35         5.42        32.45        36.49 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7672 TCGA-49-4487 
       16.41         5.33         5.03         1.64        13.74        28.11 
TCGA-49-4490 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       12.66        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27         8.78        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
        9.37        42.31         3.88        25.51        11.05         6.21 
TCGA-53-7624 TCGA-55-6712 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       35.11         0.79        40.70         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6987 
        7.76         2.20        45.34        32.71        24.99        38.47 
TCGA-55-7574 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7816 TCGA-55-7911 
        3.12         1.02         0.79         1.78         1.02         0.69 
TCGA-55-8089 TCGA-64-1679 TCGA-64-5781 TCGA-64-5815 TCGA-69-7761 TCGA-69-7978 
        3.02        55.40        39.52         7.33         6.12         2.30 
TCGA-69-8255 TCGA-73-4658 TCGA-78-7150 TCGA-78-7160 TCGA-78-7166 TCGA-78-7220 
        4.21        52.57        21.86        22.29         8.48        26.53 
TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 TCGA-86-7953 TCGA-86-8055 TCGA-86-8076 
       10.55        13.81         0.89         1.12         0.33         0.85 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6848 TCGA-93-7347 TCGA-95-7944 TCGA-97-7552 
        0.03         1.15         4.18         9.76         0.69        48.53 
TCGA-97-7553 TCGA-99-8028 TCGA-99-8033 
       43.76        15.06         5.56 

subtype1 subtype2 subtype3 
    0.07     0.03     0.03 
subtype1 subtype2 subtype3 
  223.96    88.11    77.88 
subtype1 subtype2 subtype3 
    9.01     8.20     9.27 
[1] "0.1 - 224.0 (9.0)" "0.0 - 88.1 (8.2)"  "0.0 - 77.9 (9.3)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 44 23
  subtype2 46 50
  subtype3 53 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   23
  subtype2   46   50
  subtype3   53   45
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       44       46       53
  MALE         23       50       45
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
          cls
clus        0  1
  subtype1  2 65
  subtype2  4 92
  subtype3 10 88
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   65
  subtype2    4   92
  subtype3   10   88
     clus
vv    subtype1 subtype2 subtype3
  NO         2        4       10
  YES       65       92       88
D4V11, continuous
D4V12, continuous
D4V13, multiclass
D4V14, continuous

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 48 27
  subtype2 54 17
  subtype3 45 22
subtype1 subtype2 subtype3 
      75       71       67 
subtype1 subtype2 subtype3 
      27       17       22 
$subtype1
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 
       20.05        14.93        25.02        15.02         4.96         0.99 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 
        5.19        19.10         3.39        12.59        13.15         6.44 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 
        6.21         6.84         3.35         9.93         7.76         2.70 
TCGA-44-6777 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 
       32.45        28.57        35.54        46.72        14.07        29.75 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 
       12.13         4.93        71.47        48.82         9.76        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 
       11.05        33.37         0.72        23.05        45.17         0.07 
TCGA-55-6712 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7573 TCGA-55-7911 
        0.79         7.76        45.34        32.71         0.13         0.69 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38        30.44         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-71-6725 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       13.87         5.06         2.01         1.32         4.01       163.10 
TCGA-78-7145 TCGA-78-7535 TCGA-83-5908 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       27.16        31.20        13.81         1.22        41.33         0.03 
TCGA-91-6835 TCGA-95-7039 TCGA-95-7948 
        1.15         1.12         4.34 

$subtype2
TCGA-05-4249 TCGA-05-4426 TCGA-05-5420 TCGA-05-5425 TCGA-35-3615 TCGA-38-4626 
       38.07        26.01         1.02         2.96         0.46        85.32 
TCGA-38-4627 TCGA-44-2657 TCGA-44-3396 TCGA-44-3398 TCGA-44-6774 TCGA-44-6776 
       37.71        13.15        10.22         8.32         5.42        63.72 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        9.80         5.03        17.46        17.59        13.74        76.21 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5051 TCGA-50-5930 
       29.46        43.20        15.02        12.99        14.96         9.27 
TCGA-50-5932 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-6970 TCGA-55-7574 
       35.87         8.38        31.89        13.74        15.25         3.12 
TCGA-55-7728 TCGA-55-7815 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.79         1.78         6.12        22.68        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4670 TCGA-73-7498 TCGA-73-7499 TCGA-78-7147 
       52.57        23.38         0.46        20.42        17.06        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       20.58        35.93        39.48        32.09         5.88        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 
        7.04       104.15       223.96         8.48        88.11        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-91-7771 
       10.75        28.96        32.68         0.23         0.92         1.02 
TCGA-93-7348 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        4.18         0.69         1.32        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
        8.65         5.95         0.59         0.72         8.22 

$subtype3
TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        8.98        29.95        26.01         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 TCGA-44-4112 
        8.68        47.61        28.37         8.09        12.89         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6778 TCGA-44-6779 
        3.48        16.37         0.30         3.12        36.49        16.41 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4487 TCGA-49-4506 
        5.33         1.64        18.31        18.87        28.11        32.84 
TCGA-49-4507 TCGA-49-6761 TCGA-50-5044 TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 
        8.81         0.03        20.48         8.05         8.78        77.88 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-53-7624 
       11.47         3.88        25.51        12.16         6.21        35.11 
TCGA-55-1594 TCGA-55-5899 TCGA-55-6969 TCGA-55-6971 TCGA-55-6978 TCGA-55-7910 
       38.73         2.86        40.70         0.92         5.46         6.48 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 
       56.81        20.65        39.09        83.84        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-78-7146 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 
        7.33         1.97         5.65        21.86        24.99        19.50 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 
       38.50        40.11         8.02        10.55         0.36         0.89 
TCGA-86-7953 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-95-7043 
        1.12         1.28         0.36        26.93         4.18         0.07 
TCGA-95-7567 
        5.36 

subtype1 subtype2 subtype3 
    0.03     0.23     0.03 
subtype1 subtype2 subtype3 
  163.10   223.96    83.84 
subtype1 subtype2 subtype3 
   12.13    13.74     8.98 
[1] "0.0 - 163.1 (12.1)" "0.2 - 224.0 (13.7)" "0.0 - 83.8 (9.0)"  
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 56 34
  subtype2 40 35
  subtype3 35 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56   34
  subtype2   40   35
  subtype3   35   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       56       40       35
  MALE         34       35       36
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, multiclass
D5V10, binary
          cls
clus        0  1
  subtype1  6 84
  subtype2  4 71
  subtype3  5 66
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   84
  subtype2    4   71
  subtype3    5   66
     clus
vv    subtype1 subtype2 subtype3
  NO         6        4        5
  YES       84       71       66
D5V11, continuous
D5V12, continuous
D5V13, multiclass
D5V14, continuous

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 14  4
  subtype2 47 22
  subtype3 45 27
  subtype4 41 13
subtype1 subtype2 subtype3 subtype4 
      18       69       72       54 
subtype1 subtype2 subtype3 subtype4 
       4       22       27       13 
$subtype1
TCGA-05-4405 TCGA-05-5420 TCGA-44-6145 TCGA-44-6776 TCGA-49-4505 TCGA-50-5044 
       20.05         1.02         3.35        63.72        14.07        20.48 
TCGA-50-6673 TCGA-55-6970 TCGA-55-7573 TCGA-64-5778 TCGA-78-7152 TCGA-78-7160 
        0.72        15.25         0.13        30.44        39.48        22.29 
TCGA-91-6830 TCGA-91-6835 TCGA-91-7771 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        0.03         1.15         1.02         5.95         0.72         8.22 

$subtype2
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 
       14.93         8.98        29.95        26.01         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 
        5.95         8.68        47.61        28.37         8.09        12.89 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6774 
        4.60         3.48        16.37         0.30         3.12         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49        16.41         5.33         1.64        18.31        18.87 
TCGA-44-7670 TCGA-49-4487 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 
       17.46        28.11        32.84         8.81        43.20        12.13 
TCGA-49-6761 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5946 
        0.03         8.05         9.27         8.78        77.88        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
       25.51        12.16         6.21         8.38        35.11        13.74 
TCGA-55-5899 TCGA-55-6971 TCGA-55-6978 TCGA-55-7815 TCGA-55-7910 TCGA-64-1677 
        2.86         0.92         5.46         1.78         6.48        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-69-7760 
       39.09        83.84        16.67        39.52         1.97         5.06 
TCGA-69-7765 TCGA-78-7146 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 
        4.24         5.65        21.86        19.50        38.50        40.11 
TCGA-78-7166 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
        8.48         8.02        10.55         0.36         0.89         1.12 
TCGA-91-6831 TCGA-91-6836 TCGA-95-7043 
        1.28         0.36         0.07 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4430 
       38.07         3.98        24.03        47.05         8.02        25.02 
TCGA-05-4434 TCGA-05-5423 TCGA-38-4627 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       15.02         4.96        37.71         5.19        19.10        13.15 
TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 TCGA-44-3919 TCGA-44-5645 
        3.39        12.59        13.15         6.44         6.21         6.84 
TCGA-44-6147 TCGA-44-6775 TCGA-44-6777 TCGA-49-4488 TCGA-49-4501 TCGA-49-4512 
        7.76         2.70        32.45        28.57        46.72        29.75 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5936 
        4.93        71.47        48.82         9.76        49.28         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6593 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6712 
       11.05        33.37        23.05        38.73        45.17         0.79 
TCGA-55-6969 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7911 TCGA-64-1676 
       40.70         7.76        45.34        32.71         0.69        56.81 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38         7.33         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
       13.87         2.01         4.01        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7158 TCGA-78-7535 TCGA-78-7539 TCGA-83-5908 TCGA-91-6828 
       19.27         5.88        31.20        10.75        13.81         1.22 
TCGA-91-6829 TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 
       41.33        26.93         4.18         1.12         5.36         4.34 

$subtype4
TCGA-05-4384 TCGA-05-4396 TCGA-05-4426 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       14.01         9.96        26.01         2.96         0.99         0.46 
TCGA-38-4626 TCGA-44-3396 TCGA-44-3398 TCGA-44-6146 TCGA-44-7659 TCGA-44-7661 
       85.32        10.22         8.32         9.93         9.80         5.03 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4494 TCGA-49-4510 TCGA-49-6742 
       17.59        13.74        76.21        35.54        29.46        15.02 
TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-53-7626 TCGA-55-6543 TCGA-55-7574 
       12.99        14.96        35.87        31.89         0.07         3.12 
TCGA-55-7728 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-73-4658 TCGA-73-4659 
        0.79         6.12        22.68        13.61        52.57        23.38 
TCGA-73-4670 TCGA-73-4675 TCGA-73-7498 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 
        0.46         1.32        20.42        20.58        35.93        24.99 
TCGA-78-7156 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7537 
       32.09         7.04       104.15       223.96        88.11        53.33 
TCGA-78-7540 TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-93-7348 TCGA-95-7944 
       28.96        32.68         0.23         0.92         4.18         0.69 
TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
        1.32        31.66        48.53        43.76         8.65         0.59 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.03     0.69     0.07 
subtype1 subtype2 subtype3 subtype4 
   63.72    83.84   163.10   223.96 
subtype1 subtype2 subtype3 subtype4 
   7.085    8.810   13.480   14.485 
[1] "0.0 - 63.7 (7.1)"   "0.0 - 83.8 (8.8)"   "0.7 - 163.1 (13.5)"
[4] "0.1 - 224.0 (14.5)"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[163] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[187] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[199] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[205] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[163] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[187] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[199] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[205] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[163] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype4"
[169] "subtype3" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[181] "subtype4" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[187] "subtype4" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[199] "subtype4" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[205] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[211] "subtype4" "subtype1" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 15  8
  subtype2 37 36
  subtype3 53 31
  subtype4 26 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    8
  subtype2   37   36
  subtype3   53   31
  subtype4   26   30
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       15       37       53       26
  MALE          8       36       31       30
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, multiclass
D6V10, binary
          cls
clus        0  1
  subtype1  0 23
  subtype2  7 66
  subtype3  6 78
  subtype4  2 54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   23
  subtype2    7   66
  subtype3    6   78
  subtype4    2   54
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        7        6        2
  YES       23       66       78       54
D6V11, continuous
D6V12, continuous
D6V13, multiclass
D6V14, continuous

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 62 23
  subtype2 46 13
  subtype3 24 20
  subtype4 47 17
  subtype5 29  7
subtype1 subtype2 subtype3 subtype4 subtype5 
      85       59       44       64       36 
subtype1 subtype2 subtype3 subtype4 subtype5 
      23       13       20       17        7 
$subtype1
TCGA-05-4382 TCGA-05-4398 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-35-4122 
       19.92        47.05        20.05        26.01        26.01         7.36 
TCGA-35-4123 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
        5.95        49.02        28.37        44.61         5.19        19.10 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-6775 TCGA-44-6777 TCGA-44-7661 TCGA-44-7662 
        6.21         4.60         2.70        32.45         5.03         1.64 
TCGA-44-8117 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4512 
        8.52        28.57        12.66        35.54        14.07        29.75 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5049 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
        4.93         0.03        48.82         9.76        77.88         9.37 
TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 
       42.31        12.16         6.21        48.62         0.79         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-7281 TCGA-55-7576 
        7.76         2.20        45.34        32.71         0.59         1.32 
TCGA-55-7726 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-64-1676 TCGA-64-1679 
        1.02         0.62         0.53         0.69        56.81        55.40 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-69-7760 TCGA-69-7765 TCGA-69-7978 
        0.10        30.44         7.33         5.06         4.24         2.30 
TCGA-69-7980 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
       12.56         2.01        52.57        20.28        15.35         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 TCGA-83-5908 TCGA-86-7711 
      163.10        27.16         5.65        31.20        13.81         0.89 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-91-6836 TCGA-91-6848 
        0.33         0.79         1.41         0.69         0.36         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-97-7554 TCGA-97-7937 TCGA-99-8028 
        1.12         5.36         4.34         8.65         5.95        15.06 
TCGA-J2-8192 
        5.03 

$subtype2
TCGA-05-4249 TCGA-05-4384 TCGA-05-5423 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 
       38.07        14.01         4.96         2.04         0.46        85.32 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-6776 
       26.30        18.87        17.39         3.39         3.19        63.72 
TCGA-49-4486 TCGA-49-4501 TCGA-49-6744 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 
       76.21        46.72        12.99        35.87        21.47         4.44 
TCGA-50-5944 TCGA-50-6597 TCGA-53-7626 TCGA-55-6543 TCGA-55-6986 TCGA-55-7227 
       12.26        33.37        31.89         0.07        71.05         2.01 
TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7914 TCGA-67-3770 
        1.12         3.12         1.28         1.02         0.10         0.99 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 
        2.04         0.59         0.89         0.69        13.87        22.68 
TCGA-69-7764 TCGA-69-8253 TCGA-73-4662 TCGA-73-4677 TCGA-73-7498 TCGA-78-7152 
       13.61         3.25        29.95         1.25        20.42        39.48 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7162 TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 
       32.09         5.88       104.15        53.33        10.75        32.68 
TCGA-91-6849 TCGA-93-7347 TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 
        0.92         9.76        31.66        47.18        43.76         0.59 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        5.95         5.36         4.80         0.49         8.22 

$subtype3
TCGA-05-4250 TCGA-05-4415 TCGA-05-4418 TCGA-05-4433 TCGA-05-5420 TCGA-05-5425 
        3.98         2.96         8.98        24.00         1.02         2.96 
TCGA-05-5429 TCGA-38-4625 TCGA-44-5643 TCGA-44-6145 TCGA-44-6146 TCGA-44-6779 
        0.99        47.61         3.48         3.35         9.93        16.41 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5044 
       32.84         8.81        43.20        15.02        12.13        20.48 
TCGA-50-5072 TCGA-50-5936 TCGA-50-5939 TCGA-50-6592 TCGA-50-6673 TCGA-55-6970 
        8.05         8.45        15.12        25.51         0.72        15.25 
TCGA-55-6975 TCGA-55-6984 TCGA-55-6987 TCGA-55-7728 TCGA-55-8089 TCGA-64-5781 
        3.88        24.99        38.47         0.79         3.02        39.52 
TCGA-69-7761 TCGA-73-4670 TCGA-78-7148 TCGA-78-7150 TCGA-78-7154 TCGA-78-7160 
        6.12         0.46        20.58        21.86        19.50        22.29 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7540 TCGA-78-7542 TCGA-91-6830 TCGA-93-8067 
        8.48        26.53        28.96        10.55         0.03         6.08 
TCGA-95-7944 TCGA-99-8033 
        0.69         5.56 

$subtype4
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       37.02         9.96        24.03        14.93        29.95        30.02 
TCGA-05-4432 TCGA-35-5375 TCGA-38-4630 TCGA-38-4631 TCGA-44-5644 TCGA-44-6774 
       25.02         8.68        35.28        11.64        16.37         5.42 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 TCGA-49-4487 
       36.49         5.33        18.31        18.87         3.22        28.11 
TCGA-49-4510 TCGA-50-5051 TCGA-50-5931 TCGA-50-5946 TCGA-50-6591 TCGA-50-7109 
       29.46        14.96         8.78        11.47         3.88         8.38 
TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       35.11        13.74        23.05        38.73        45.17         2.86 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-7815 
       32.61        42.48        40.70         0.92        48.49         1.78 
TCGA-55-7910 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 
        6.48        20.65        39.09        83.84        16.67         1.97 
TCGA-69-7973 TCGA-69-8255 TCGA-73-4659 TCGA-78-7149 TCGA-78-7153 TCGA-78-7155 
        7.56         4.21        23.38        35.93        24.99        38.50 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7536 TCGA-86-7701 TCGA-86-7713 
       40.11         7.04        88.11         8.02         0.36         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 
        1.12         0.62         1.22        41.33         1.28        26.93 
TCGA-91-7771 TCGA-95-7043 TCGA-99-8032 TCGA-J2-8194 
        1.02         0.07         1.45         3.72 

$subtype5
TCGA-05-4402 TCGA-05-4430 TCGA-05-4434 TCGA-38-4627 TCGA-44-2657 TCGA-44-5645 
        8.02        25.02        15.02        37.71        13.15         6.84 
TCGA-44-6147 TCGA-44-6148 TCGA-44-7659 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        7.76         3.12         9.80        17.46        17.59        13.74 
TCGA-50-5055 TCGA-50-5068 TCGA-50-6593 TCGA-55-6983 TCGA-55-6985 TCGA-55-7573 
       25.81        49.28        11.05        60.03        40.54         0.13 
TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 TCGA-69-7974 TCGA-69-7979 TCGA-69-8254 
       37.02        44.38         0.59         6.05         2.93         2.50 
TCGA-73-4675 TCGA-73-7499 TCGA-78-7147 TCGA-78-7163 TCGA-86-8076 TCGA-86-8280 
        1.32        17.06        19.27       223.96         0.85         0.53 
TCGA-91-6835 TCGA-93-7348 TCGA-95-7947 TCGA-97-7552 TCGA-97-7941 TCGA-99-8025 
        1.15         4.18         1.32        48.53         0.72        14.04 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.07     0.03     0.07     0.13 
subtype1 subtype2 subtype3 subtype4 subtype5 
  163.10   104.15    47.61    88.11   223.96 
subtype1 subtype2 subtype3 subtype4 subtype5 
   8.090   10.750    9.455   15.665   12.100 
[1] "0.0 - 163.1 (8.1)"  "0.1 - 104.2 (10.8)" "0.0 - 47.6 (9.5)"  
[4] "0.1 - 88.1 (15.7)"  "0.1 - 224.0 (12.1)"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [79] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype1" "subtype4" "subtype5" "subtype1" "subtype5" "subtype3"
[103] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype5" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype1"
[133] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
[145] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype5" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[163] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[169] "subtype1" "subtype5" "subtype5" "subtype4" "subtype1" "subtype1"
[175] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype5"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype4" "subtype5"
[193] "subtype1" "subtype5" "subtype1" "subtype2" "subtype5" "subtype4"
[199] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype5" "subtype1" "subtype2" "subtype2" "subtype5"
[211] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype5"
[229] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype2"
[235] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype1" "subtype5" "subtype1" "subtype5" "subtype4" "subtype4"
[253] "subtype3" "subtype4" "subtype5" "subtype1" "subtype4" "subtype1"
[259] "subtype2" "subtype4" "subtype2" "subtype5" "subtype3" "subtype1"
[265] "subtype4" "subtype1" "subtype3" "subtype5" "subtype1" "subtype2"
[271] "subtype2" "subtype5" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype5" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype5" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [79] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype1" "subtype4" "subtype5" "subtype1" "subtype5" "subtype3"
[103] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype5" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype1"
[133] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
[145] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype5" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[163] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[169] "subtype1" "subtype5" "subtype5" "subtype4" "subtype1" "subtype1"
[175] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype5"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype4" "subtype5"
[193] "subtype1" "subtype5" "subtype1" "subtype2" "subtype5" "subtype4"
[199] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype5" "subtype1" "subtype2" "subtype2" "subtype5"
[211] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype5"
[229] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype2"
[235] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype1" "subtype5" "subtype1" "subtype5" "subtype4" "subtype4"
[253] "subtype3" "subtype4" "subtype5" "subtype1" "subtype4" "subtype1"
[259] "subtype2" "subtype4" "subtype2" "subtype5" "subtype3" "subtype1"
[265] "subtype4" "subtype1" "subtype3" "subtype5" "subtype1" "subtype2"
[271] "subtype2" "subtype5" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype5" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype5" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
  [1] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
  [7] "subtype4" "subtype1" "subtype5" "subtype1" "subtype3" "subtype4"
 [13] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
 [19] "subtype4" "subtype3" "subtype5" "subtype3" "subtype2" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [31] "subtype3" "subtype2" "subtype5" "subtype1" "subtype1" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype5" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype3" "subtype4" "subtype5" "subtype3" "subtype3" "subtype5"
 [61] "subtype5" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [67] "subtype3" "subtype5" "subtype4" "subtype1" "subtype1" "subtype4"
 [73] "subtype4" "subtype5" "subtype5" "subtype5" "subtype1" "subtype4"
 [79] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype4" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype1" "subtype4" "subtype5" "subtype1" "subtype5" "subtype3"
[103] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype4" "subtype1" "subtype4"
[115] "subtype3" "subtype5" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype1"
[133] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
[145] "subtype3" "subtype5" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype5" "subtype2" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[163] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[169] "subtype1" "subtype5" "subtype5" "subtype4" "subtype1" "subtype1"
[175] "subtype4" "subtype3" "subtype1" "subtype2" "subtype4" "subtype5"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype4" "subtype5"
[193] "subtype1" "subtype5" "subtype1" "subtype2" "subtype5" "subtype4"
[199] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype5" "subtype1" "subtype2" "subtype2" "subtype5"
[211] "subtype1" "subtype1" "subtype1" "subtype5" "subtype3" "subtype4"
[217] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[223] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype5"
[229] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype2"
[235] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[247] "subtype1" "subtype5" "subtype1" "subtype5" "subtype4" "subtype4"
[253] "subtype3" "subtype4" "subtype5" "subtype1" "subtype4" "subtype1"
[259] "subtype2" "subtype4" "subtype2" "subtype5" "subtype3" "subtype1"
[265] "subtype4" "subtype1" "subtype3" "subtype5" "subtype1" "subtype2"
[271] "subtype2" "subtype5" "subtype2" "subtype1" "subtype1" "subtype2"
[277] "subtype5" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype5" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 52 42
  subtype2 44 23
  subtype3 22 27
  subtype4 33 41
  subtype5 26 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52   42
  subtype2   44   23
  subtype3   22   27
  subtype4   33   41
  subtype5   26   14
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
          cls
clus        0  1
  subtype1  6 88
  subtype2  4 63
  subtype3  4 45
  subtype4  2 72
  subtype5  2 38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   88
  subtype2    4   63
  subtype3    4   45
  subtype4    2   72
  subtype5    2   38
D7V11, continuous
D7V12, continuous
D7V13, multiclass
D7V14, continuous

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 94 29
  subtype2 59 28
  subtype3 55 23
subtype1 subtype2 subtype3 
     123       87       78 
subtype1 subtype2 subtype3 
      29       28       23 
$subtype1
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 
       38.07        14.01         9.96        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 
       15.02         4.96         0.99         2.04         0.46        85.32 
TCGA-38-4627 TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       37.71        44.61        26.30        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3919 TCGA-44-5645 TCGA-44-6146 
        3.39        13.15         3.19         6.21         6.84         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6776 TCGA-44-7659 TCGA-44-7670 TCGA-44-7671 
        7.76         3.12        63.72         9.80        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4510 
       13.74        76.21        28.11        28.57        46.72        29.46 
TCGA-49-4512 TCGA-49-6744 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 
       29.75        12.99        48.82        25.81        49.28        35.87 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6673 TCGA-53-7626 TCGA-55-6543 
        4.44        12.26        11.05         0.72        31.89         0.07 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        0.92        48.49        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       71.05        38.47         2.01         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7907 TCGA-55-7914 TCGA-64-1680 
        3.12         1.28         0.79         0.53         0.10        37.02 
TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       44.38        30.44         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7974 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-73-4662 TCGA-73-4675 
        6.05         2.93         3.25         2.50        29.95         1.32 
TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7152 
        1.25        20.42       163.10        19.27        35.93        39.48 
TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 
       24.99        32.09         5.88       104.15       223.96        88.11 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-86-8076 TCGA-86-8280 TCGA-91-6830 
       53.33        28.96        32.68         0.85         0.53         0.03 
TCGA-91-6835 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7947 
        1.15         0.92         1.02         9.76         4.18         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        4.34        31.66        47.18        48.53        43.76         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-J2-8194 
       14.04        15.06         3.72 

$subtype2
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       19.92        37.02        24.03         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-35-5375 
       29.95        30.02        25.02         1.02         2.96         8.68 
TCGA-38-4630 TCGA-38-4631 TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6774 
       35.28        11.64         3.48        16.37         3.35         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 
       36.49        16.41         5.33        18.31        18.87         3.22 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 
       32.84         8.81        43.20        15.02        12.13        14.96 
TCGA-50-5072 TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 TCGA-50-5946 TCGA-50-6591 
        8.05         8.78         8.45        15.12        11.47         3.88 
TCGA-50-6592 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
       25.51         8.38        35.11        13.74        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
       45.17         2.86        32.61        42.48        40.70        15.25 
TCGA-55-6975 TCGA-55-7726 TCGA-55-7815 TCGA-55-7910 TCGA-55-8089 TCGA-64-1678 
        3.88         1.02         1.78         6.48         3.02        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-69-7973 
       83.84         0.10        16.67        39.52         1.97         7.56 
TCGA-69-8255 TCGA-73-4659 TCGA-73-4670 TCGA-78-7148 TCGA-78-7150 TCGA-78-7154 
        4.21        23.38         0.46        20.58        21.86        19.50 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7166 TCGA-78-7220 
       38.50        40.11        22.29         7.04         8.48        26.53 
TCGA-78-7536 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-91-6828 
        8.02         0.36         0.89         0.23         0.62         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 TCGA-93-8067 TCGA-95-7043 
       41.33         1.28        26.93         4.18         6.08         0.07 
TCGA-95-7944 TCGA-99-8032 TCGA-99-8033 
        0.69         1.45         5.56 

$subtype3
TCGA-05-4250 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4427 TCGA-35-4122 
        3.98        47.05         8.02        20.05        26.01         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-6178 TCGA-44-2656 
        5.95        47.61        49.02        28.37         5.19        19.10 
TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
       15.78         8.09        10.22         8.32         6.44         4.60 
TCGA-44-6775 TCGA-44-6777 TCGA-44-7661 TCGA-44-7662 TCGA-44-8117 TCGA-49-4490 
        2.70        32.45         5.03         1.64         8.52        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5066 
       35.54        14.07         4.93         0.03        20.48         9.76 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 
       77.88        21.47         9.37        42.31        12.16         6.21 
TCGA-50-6597 TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       33.37        48.62         0.79         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-7911 TCGA-64-1676 
       45.34         1.32         1.02         0.62         0.69        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-5815 TCGA-69-7760 TCGA-69-7765 TCGA-69-7978 
       20.65        55.40         7.33         5.06         4.24         2.30 
TCGA-69-7980 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
       12.56         2.01        52.57        20.28        15.35         4.01 
TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 TCGA-78-7539 TCGA-78-7542 
       17.06        27.16         5.65        31.20        10.75        10.55 
TCGA-83-5908 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 
       13.81         1.12         0.33         0.79         1.41         0.69 
TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 TCGA-97-7937 TCGA-J2-8192 
        0.36         1.12         5.36         8.65         5.95         5.03 

subtype1 subtype2 subtype3 
    0.03     0.07     0.03 
subtype1 subtype2 subtype3 
  223.96    83.84    77.88 
subtype1 subtype2 subtype3 
  13.150   11.640    8.205 
[1] "0.0 - 224.0 (13.2)" "0.1 - 83.8 (11.6)"  "0.0 - 77.9 (8.2)"  
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[193] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[211] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[223] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 85 54
  subtype2 38 59
  subtype3 54 34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   85   54
  subtype2   38   59
  subtype3   54   34
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       85       38       54
  MALE         54       59       34
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
D8V7, multiclass
D8V8, multiclass
D8V9, multiclass
D8V10, binary
          cls
clus         0   1
  subtype1   6 133
  subtype2   6  91
  subtype3   6  82
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6  133
  subtype2    6   91
  subtype3    6   82
     clus
vv    subtype1 subtype2 subtype3
  NO         6        6        6
  YES      133       91       82
D8V11, continuous
D8V12, continuous
D8V13, multiclass
D8V14, continuous

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 83 29
  subtype2 83 32
  subtype3 39 19
subtype1 subtype2 subtype3 
     112      115       58 
subtype1 subtype2 subtype3 
      29       32       19 
$subtype1
TCGA-05-4384 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-5429 TCGA-35-3615 
       14.01        26.01        26.01        24.00         0.99         0.46 
TCGA-38-4626 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2666 
       85.32        26.30        18.87        13.15         3.39         3.19 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        8.32         6.21         4.60         6.84         3.35         9.93 
TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 
       63.72        32.45         9.80         5.03        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 
       76.21        28.11        12.66        14.07        29.46        12.99 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 
        4.93        71.47        14.96        25.81        49.28        35.87 
TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6673 
        8.45         9.37         4.44        12.26        11.05         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-55-6712 TCGA-55-6970 TCGA-55-6972 TCGA-55-6984 
        8.38        31.89         0.79        15.25        48.49        24.99 
TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 
       71.05         2.01         0.59         1.12         0.13         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1680 
        1.28         1.02         0.62         0.69         0.10        37.02 
TCGA-64-1681 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3774 TCGA-67-6215 
       44.38        30.44         7.33         0.99         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-8253 TCGA-69-8254 TCGA-73-4662 TCGA-73-4676 TCGA-73-7498 TCGA-78-7143 
        3.25         2.50        29.95         4.01        20.42       163.10 
TCGA-78-7145 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       27.16        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       32.09         5.88        22.29       104.15         8.48        88.11 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
       53.33        28.96        32.68         0.85         0.76         0.53 
TCGA-91-6835 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-95-7947 
        1.15         0.92         1.02         9.76         5.36         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        4.34        31.66        47.18        48.53        43.76         0.59 
TCGA-97-8174 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        5.36         0.49         8.22        15.06 

$subtype2
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 
        8.02         2.96         8.98        29.95        30.02        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       25.02        15.02         1.02         4.96         2.96         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        7.36         5.95         8.68        47.61        49.02        35.28 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 
       44.61        19.10        17.39        15.78         8.09        10.22 
TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 TCGA-44-7670 TCGA-44-8117 
        6.44         3.48        16.37         5.33        17.46         8.52 
TCGA-44-8119 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
        3.22        28.57        35.54        46.72        32.84         8.81 
TCGA-49-4514 TCGA-49-6743 TCGA-50-5049 TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 
       43.20        12.13        48.82         9.76         9.27         8.78 
TCGA-50-5935 TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 
       21.47        12.16        33.37        35.11        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6969 
       38.73        48.62        45.17         2.86        42.48        40.70 
TCGA-55-6971 TCGA-55-6979 TCGA-55-6981 TCGA-55-6987 TCGA-55-7728 TCGA-55-7815 
        0.92         7.76        45.34        38.47         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-8089 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.53         6.48         3.02        56.81        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       83.84         0.10        16.67         1.97         0.59         2.04 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-73-4659 
        7.56         6.05         2.30         2.93        12.56        23.38 
TCGA-73-7499 TCGA-78-7146 TCGA-78-7147 TCGA-78-7150 TCGA-78-7155 TCGA-78-7159 
       17.06         5.65        19.27        21.86        38.50        40.11 
TCGA-78-7161 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 
        7.04         8.02        10.75        10.55        13.81         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8075 TCGA-86-8279 TCGA-91-6828 
        0.23         1.12         0.62         1.41         0.69         1.22 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-93-8067 TCGA-95-7039 
        0.03         1.28         0.36        26.93         6.08         1.12 
TCGA-95-7043 TCGA-95-7944 TCGA-97-7941 TCGA-97-8172 TCGA-99-8025 TCGA-99-8033 
        0.07         0.69         0.72         5.95        14.04         5.56 
TCGA-J2-8194 
        3.72 

$subtype3
TCGA-05-4249 TCGA-05-4405 TCGA-05-4417 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 
       38.07        20.05        14.93        37.71        28.37        11.64 
TCGA-38-6178 TCGA-44-2665 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
        5.19        13.15         0.30         7.76         5.42         2.70 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4512 
       36.49        16.41         1.64        18.31        18.87        29.75 
TCGA-49-6742 TCGA-49-6761 TCGA-50-5044 TCGA-50-5072 TCGA-50-5933 TCGA-50-5939 
       15.02         0.03        20.48         8.05        77.88        15.12 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-55-6543 TCGA-55-6642 
       42.31         3.88        25.51         6.21         0.07        32.61 
TCGA-55-6978 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-7574 
        5.46         2.20        32.71        60.03        40.54         3.12 
TCGA-55-7726 TCGA-55-7816 TCGA-64-1679 TCGA-64-5781 TCGA-69-7760 TCGA-71-6725 
        1.02         1.02        55.40        39.52         5.06         2.01 
TCGA-73-4658 TCGA-73-4675 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-86-7701 
       52.57         1.32       223.96        26.53        31.20         0.36 
TCGA-86-8055 TCGA-86-8074 TCGA-91-6829 TCGA-91-6848 TCGA-93-7348 TCGA-97-7554 
        0.33         0.79        41.33         4.18         4.18         8.65 
TCGA-97-7937 TCGA-97-8177 TCGA-99-8032 TCGA-J2-8192 
        5.95         4.80         1.45         5.03 

subtype1 subtype2 subtype3 
    0.10     0.03     0.03 
subtype1 subtype2 subtype3 
  163.10    83.84   223.96 
subtype1 subtype2 subtype3 
  11.655    9.760   10.145 
[1] "0.1 - 163.1 (11.7)" "0.0 - 83.8 (9.8)"   "0.0 - 224.0 (10.1)"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[121] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[283] "subtype2" "subtype3" "subtype2"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 69 56
  subtype2 71 62
  subtype3 37 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69   56
  subtype2   71   62
  subtype3   37   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       69       71       37
  MALE         56       62       26
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
D9V7, multiclass
D9V8, multiclass
D9V9, multiclass
D9V10, binary
          cls
clus         0   1
  subtype1   9 116
  subtype2   7 126
  subtype3   3  60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  116
  subtype2    7  126
  subtype3    3   60
     clus
vv    subtype1 subtype2 subtype3
  NO         9        7        3
  YES      116      126       60
D9V11, continuous
D9V12, continuous
D9V13, multiclass
D9V14, continuous

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 42 18
  subtype2 94 36
  subtype3 31  5
  subtype4 38 21
subtype1 subtype2 subtype3 subtype4 
      60      130       36       59 
subtype1 subtype2 subtype3 subtype4 
      18       36        5       21 
$subtype1
TCGA-05-4382 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 
       19.92        37.02        47.05         8.02         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-44-3396 
       29.95        30.02        26.01        25.02        25.02        10.22 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 
       16.37         0.30        36.49         5.33        18.31        18.87 
TCGA-44-7670 TCGA-44-8119 TCGA-49-4490 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 
       17.46         3.22        12.66        15.02        12.13        48.82 
TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-6590 TCGA-50-6673 TCGA-53-7624 
        9.76         8.05         9.27        42.31         0.72        35.11 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6969 
       23.05        38.73        45.17         2.86        42.48        40.70 
TCGA-55-6987 TCGA-55-7910 TCGA-55-8089 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       38.47         6.48         3.02        55.40        83.84         0.10 
TCGA-64-5779 TCGA-67-3771 TCGA-73-7499 TCGA-78-7146 TCGA-78-7150 TCGA-78-7155 
       16.67         1.97        17.06         5.65        21.86        38.50 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7542 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 
       26.53         8.02        10.55        13.81         0.89         0.23 
TCGA-86-8055 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6848 
        0.33         1.22        41.33         0.03         1.28         4.18 

$subtype2
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4405 TCGA-05-4426 TCGA-05-4433 
        3.98        14.01         9.96        20.05        26.01        24.00 
TCGA-05-4434 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-7271 
       15.02         0.99         0.46         7.36        85.32        26.30 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2666 TCGA-44-3398 TCGA-44-3919 
       18.87        13.15         3.39         3.19         8.32         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 
        4.60         6.84         3.35         9.93         7.76         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 
       63.72        32.45        16.41         9.80         5.03        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 
       13.74        76.21        28.11        14.07        29.46        29.75 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5068 
       12.99         4.93        20.48        71.47        25.81        49.28 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 
       35.87         8.45         9.37         4.44        12.26        11.05 
TCGA-50-6597 TCGA-53-7626 TCGA-55-6712 TCGA-55-6970 TCGA-55-6972 TCGA-55-6983 
       33.37        31.89         0.79        15.25        48.49        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05         2.01         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7816 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1680 
        1.78         1.02         0.62         0.69         0.10        37.02 
TCGA-64-1681 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3774 TCGA-67-6215 
       44.38        30.44         7.33         0.99         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4675 TCGA-73-4676 
        3.25         2.50         2.01        52.57         1.32         4.01 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       20.42       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       39.48        24.99        19.50        32.09         5.88        22.29 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7540 
      104.15         8.48        88.11        31.20        53.33        28.96 
TCGA-78-7633 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-91-6835 TCGA-91-6849 
       32.68         0.85         0.76         0.53         1.15         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        1.02         9.76         5.36         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         5.95         0.59         0.72 
TCGA-97-8174 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        5.36         0.49         8.22        15.06 

$subtype3
TCGA-05-4249 TCGA-05-4417 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       38.07        14.93         1.02         4.96         2.96         2.04 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2659 TCGA-44-3918 TCGA-44-8117 TCGA-49-4501 
       49.02        19.10        17.39         6.44         8.52        46.72 
TCGA-49-4514 TCGA-50-5051 TCGA-50-5935 TCGA-50-7109 TCGA-53-7813 TCGA-55-1595 
       43.20        14.96        21.47         8.38        13.74        48.62 
TCGA-55-6642 TCGA-55-6971 TCGA-55-7907 TCGA-64-1677 TCGA-64-1678 TCGA-67-3772 
       32.61         0.92         0.53        20.65        39.09         0.59 
TCGA-67-3773 TCGA-69-7760 TCGA-69-7973 TCGA-73-4659 TCGA-73-4662 TCGA-78-7159 
        2.04         5.06         7.56        23.38        29.95        40.11 
TCGA-78-7161 TCGA-78-7539 TCGA-86-7701 TCGA-91-6836 TCGA-97-8172 TCGA-99-8032 
        7.04        10.75         0.36         0.36         5.95         1.45 

$subtype4
TCGA-05-4397 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4629 
       24.03         5.95         8.68        47.61        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2662 TCGA-44-2665 
       35.28        11.64        44.61         5.19        15.78        13.15 
TCGA-44-2668 TCGA-44-5643 TCGA-44-6774 TCGA-44-7662 TCGA-49-4488 TCGA-49-4494 
        8.09         3.48         5.42         1.64        28.57        35.54 
TCGA-49-4506 TCGA-49-4507 TCGA-49-6761 TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 
       32.84         8.81         0.03         8.78        77.88        15.12 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-55-6543 TCGA-55-6978 
        3.88        25.51        12.16         6.21         0.07         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-7726 TCGA-64-1676 
        7.76         2.20        45.34        32.71         1.02        56.81 
TCGA-64-5781 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-78-7163 
       39.52         6.05         2.30         2.93        12.56       223.96 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-91-6847 
        1.12         0.62         0.79         1.41         0.69        26.93 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-97-7554 
        4.18         6.08         1.12         0.07         0.69         8.65 
TCGA-97-8177 TCGA-99-8025 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        4.80        14.04         5.56         5.03         3.72 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.36     0.03 
subtype1 subtype2 subtype3 subtype4 
   83.84   163.10    49.02   223.96 
subtype1 subtype2 subtype3 subtype4 
  15.695    9.945    9.635    7.760 
[1] "0.0 - 83.8 (15.7)" "0.1 - 163.1 (9.9)" "0.4 - 49.0 (9.6)" 
[4] "0.0 - 224.0 (7.8)"
  [1] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
 [31] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
 [37] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
 [85] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[109] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[223] "subtype2" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[283] "subtype4" "subtype4" "subtype4"
  [1] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
 [31] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
 [37] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
 [85] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[109] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[223] "subtype2" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[283] "subtype4" "subtype4" "subtype4"
  [1] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype4" "subtype4"
 [31] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
 [37] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [55] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
 [85] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
[109] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[139] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[223] "subtype2" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[241] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype4"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[277] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[283] "subtype4" "subtype4" "subtype4"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 28 42
  subtype2 81 63
  subtype3 27 13
  subtype4 41 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   42
  subtype2   81   63
  subtype3   27   13
  subtype4   41   26
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       28       81       27       41
  MALE         42       63       13       26
D10V4, continuous
D10V5, multiclass
D10V6, multiclass
D10V7, multiclass
D10V8, multiclass
D10V9, multiclass
D10V10, binary
          cls
clus         0   1
  subtype1   5  65
  subtype2   7 137
  subtype3   3  37
  subtype4   4  63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   65
  subtype2    7  137
  subtype3    3   37
  subtype4    4   63
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        7        3        4
  YES       65      137       37       63
D10V11, continuous
D10V12, continuous
D10V13, multiclass
D10V14, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
                    "STOPPEDSMOKINGYEAR" 
                                     V13 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V14 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
