		Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NUMBERPACKYEARSSMOKED		STOPPEDSMOKINGYEAR		TOBACCOSMOKINGHISTORYINDICATOR		YEAROFTOBACCOSMOKINGONSET	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q
1p gain	21 (6%)	304	0.76675	1	0.30605	1	0.071365	1	NA	NA	3.7874e-06	0.0041	0.067498	1	1	1	0.26829	1	0.15078	1	0.52609	1	0.44874	1	0.35934	1	0.40812	1	0.24488	1
1q gain	69 (21%)	256	0.62396	1	0.49869	1	0.87782	1	0.3579	1	0.0045343	1	0.105	1	0.74013	1	0.2669	1	0.52895	1	1	1	0.27183	1	0.90917	1	0.86585	1	0.69277	1
2p gain	76 (23%)	249	0.81202	1	0.89843	1	0.070594	1	0.12597	1	0.010599	1	0.12476	1	0.24692	1	0.17264	1	0.16935	1	0.29118	1	0.057986	1	0.28384	1	0.72581	1	0.024319	1
2q gain	35 (11%)	290	0.51126	1	0.99554	1	0.83833	1	0.61082	1	5.7778e-05	0.0625	0.086521	1	0.66094	1	0.19847	1	0.0063081	1	0.33588	1	0.52841	1	0.18492	1	0.94366	1	0.72274	1
3p gain	35 (11%)	290	0.39284	1	0.13731	1	0.14937	1	0.19686	1	0.97797	1	0.056409	1	0.87066	1	0.50698	1	0.51092	1	1	1	0.35598	1	0.25557	1	0.1133	1	0.056065	1
3q gain	148 (46%)	177	0.63278	1	0.25112	1	0.70223	1	0.33369	1	0.35421	1	0.56846	1	0.88738	1	0.43723	1	0.6675	1	1	1	0.79716	1	0.77391	1	0.047371	1	0.01595	1
4p gain	14 (4%)	311	0.33008	1	0.63565	1	0.024769	1	0.7119	1	0.7632	1	0.13091	1	1	1	0.69225	1	0.63184	1	1	1	0.35385	1	0.94136	1	0.75761	1	0.40403	1
4q gain	6 (2%)	319	0.88845	1	0.44204	1	0.34396	1	NA	NA	0.18818	1	0.089019	1	0.66324	1	1	1	0.066887	1	1	1	0.17223	1	0.28566	1	0.12195	1	NA	NA
5p gain	149 (46%)	176	0.46389	1	0.065179	1	0.44705	1	0.66304	1	0.31445	1	0.061046	1	0.40168	1	0.46577	1	0.62625	1	1	1	0.52943	1	0.76088	1	0.057726	1	0.74019	1
5q gain	32 (10%)	293	0.64238	1	0.35107	1	0.67588	1	0.4533	1	0.97513	1	0.92788	1	0.53483	1	0.83544	1	0.68946	1	0.29596	1	0.70641	1	0.78527	1	0.78503	1	0.31962	1
6p gain	30 (9%)	295	0.75549	1	0.34301	1	0.82955	1	0.28646	1	0.029537	1	0.11762	1	0.91513	1	0.45152	1	0.17836	1	0.26935	1	0.27922	1	0.15006	1	0.78671	1	0.01309	1
6q gain	17 (5%)	308	0.77924	1	0.45487	1	1	1	0.4632	1	0.00092943	1	0.6113	1	0.74027	1	0.73527	1	1	1	0.45148	1	0.1644	1	0.73317	1	0.86956	1	0.1894	1
7p gain	88 (27%)	237	0.1885	1	0.11518	1	0.56732	1	0.74284	1	0.73611	1	0.0094464	1	0.78324	1	0.31911	1	0.58337	1	0.7335	1	0.054031	1	0.29395	1	0.5834	1	0.24456	1
7q gain	84 (26%)	241	0.39843	1	0.28421	1	0.38367	1	0.47981	1	0.46341	1	0.010228	1	0.67752	1	0.11743	1	0.27897	1	0.73491	1	0.74143	1	0.037238	1	0.81159	1	0.39719	1
8p gain	46 (14%)	279	0.89024	1	0.39873	1	1	1	0.0063787	1	0.10494	1	0.6027	1	0.48708	1	0.07475	1	0.21621	1	0.19324	1	0.73769	1	0.84291	1	0.63781	1	0.44394	1
8q gain	95 (29%)	230	0.37567	1	0.74469	1	0.57765	1	0.53129	1	0.86918	1	0.2395	1	0.80909	1	0.12291	1	0.10903	1	0.30943	1	0.30924	1	0.72892	1	0.27275	1	0.63455	1
9p gain	19 (6%)	306	0.21401	1	0.71987	1	0.27852	1	NA	NA	0.0012662	1	0.5323	1	0.70424	1	1	1	0.79464	1	1	1	0.92763	1	0.20525	1	0.87895	1	0.88244	1
9q gain	27 (8%)	298	0.17107	1	0.50401	1	1	1	0.53685	1	0.39236	1	0.32843	1	0.80559	1	0.21375	1	0.71529	1	0.60897	1	0.67984	1	0.89864	1	0.53682	1	0.73955	1
10p gain	15 (5%)	310	0.8249	1	0.99628	1	0.76794	1	0.93626	1	0.97358	1	0.29871	1	0.077132	1	0.13497	1	0.013217	1	0.41031	1	0.24815	1	0.88081	1	0.48785	1	0.37245	1
10q gain	6 (2%)	319	0.35449	1	0.73352	1	1	1	NA	NA	0.99559	1	0.48074	1	0.45189	1	1	1	0.52026	1	0.18798	1	0.58154	1	0.45897	1	0.11153	1	0.77094	1
11p gain	18 (6%)	307	0.54609	1	0.55442	1	0.57824	1	1.9981e-06	0.00217	0.96251	1	0.0089406	1	0.39681	1	1	1	0.5204	1	0.47107	1	0.1481	1	0.8725	1	0.84367	1	0.54105	1
11q gain	21 (6%)	304	0.29341	1	0.73544	1	0.30358	1	0.52069	1	0.92126	1	0.045722	1	0.18565	1	0.77317	1	0.084379	1	0.52609	1	0.56156	1	0.8222	1	0.70139	1	0.98652	1
12p gain	90 (28%)	235	0.86765	1	0.93873	1	0.0043735	1	0.077351	1	0.88447	1	0.14907	1	0.80415	1	0.86176	1	0.90261	1	0.50467	1	0.96494	1	0.34279	1	0.40382	1	0.40419	1
12q gain	40 (12%)	285	0.72205	1	0.8191	1	0.05193	1	0.37758	1	0.97836	1	0.28312	1	0.10811	1	0.3531	1	0.23413	1	0.63175	1	0.6303	1	0.30234	1	0.20594	1	0.83895	1
13q gain	8 (2%)	317	0.27526	1	0.93745	1	0.68489	1	NA	NA	0.99223	1	0.26335	1	1	1	0.25167	1	0.6705	1	1	1	0.56564	1	0.84301	1	0.12347	1	0.68135	1
14q gain	31 (10%)	294	0.068263	1	0.0833	1	0.51816	1	0.85798	1	0.97358	1	0.27266	1	0.62948	1	0.55198	1	0.90018	1	1	1	0.60846	1	0.25147	1	0.3581	1	0.65739	1
15q gain	29 (9%)	296	0.68746	1	0.99328	1	1	1	0.38928	1	0.45293	1	0.7327	1	0.3348	1	1	1	0.64391	1	1	1	0.51118	1	0.4412	1	0.012566	1	0.46272	1
16p gain	15 (5%)	310	0.7785	1	0.3108	1	0.37074	1	0.068098	1	0.79923	1	0.015622	1	0.67812	1	1	1	0.61022	1	1	1	0.80567	1	0.68773	1	0.43685	1	0.12113	1
16q gain	19 (6%)	306	0.85637	1	0.10861	1	0.17486	1	0.36575	1	0.95844	1	0.0040728	1	0.22815	1	0.29211	1	0.15327	1	1	1	0.94034	1	0.17387	1	0.92205	1	0.01249	1
17p gain	9 (3%)	316	0.34613	1	0.83903	1	0.11844	1	NA	NA	3.7919e-07	0.000413	0.55011	1	0.41862	1	0.29362	1	0.095	1	1	1	0.9482	1	0.58103	1	0.14258	1	0.02319	1
17q gain	35 (11%)	290	0.70397	1	0.3826	1	0.042069	1	0.1205	1	0.60942	1	0.47715	1	0.020607	1	0.168	1	0.050512	1	0.33588	1	0.79118	1	0.4013	1	0.56695	1	0.055767	1
18p gain	51 (16%)	274	0.18319	1	0.13027	1	0.22006	1	0.32139	1	0.83713	1	0.12345	1	0.019572	1	0.097046	1	0.17913	1	0.68531	1	0.34396	1	0.49823	1	0.19121	1	0.63613	1
18q gain	38 (12%)	287	0.42001	1	0.493	1	0.69221	1	0.56696	1	0.67169	1	0.17589	1	0.11934	1	0.32346	1	0.83006	1	0.6244	1	0.079331	1	0.69149	1	0.54356	1	0.24773	1
19p gain	33 (10%)	292	0.43778	1	0.22697	1	0.67541	1	1.7696e-06	0.00192	5.6313e-06	0.00609	0.63371	1	0.37765	1	0.56639	1	0.63024	1	0.30928	1	0.59171	1	0.95401	1	0.65633	1	0.83014	1
19q gain	46 (14%)	279	0.66717	1	0.82024	1	1	1	0.13881	1	0.00056485	0.608	0.85435	1	0.11229	1	0.07475	1	0.05744	1	0.65887	1	0.87866	1	0.74163	1	0.86315	1	0.16175	1
20p gain	91 (28%)	234	0.76505	1	0.063715	1	0.02305	1	0.27865	1	0.17288	1	0.94187	1	0.62227	1	0.040791	1	0.1525	1	0.18993	1	0.74053	1	0.68349	1	0.77885	1	0.19833	1
20q gain	81 (25%)	244	0.64238	1	0.31868	1	0.18775	1	0.76985	1	0.017531	1	0.9911	1	0.52627	1	0.082431	1	0.13991	1	0.14994	1	0.46956	1	0.4298	1	0.82457	1	0.65793	1
21q gain	18 (6%)	307	0.26823	1	0.68199	1	1	1	0.94869	1	5.9588e-05	0.0644	0.23861	1	0.24863	1	0.72039	1	0.19145	1	0.47107	1	0.86516	1	0.51501	1	0.48784	1	0.63058	1
22q gain	77 (24%)	248	0.082608	1	0.36096	1	0.45838	1	0.7815	1	0.90583	1	0.20393	1	0.53007	1	1	1	0.11297	1	0.72613	1	0.93833	1	0.086884	1	0.32832	1	0.60437	1
Xq gain	9 (3%)	316	0.88142	1	0.28663	1	1	1	0.89065	1	0.99021	1	0.48348	1	0.8905	1	0.64229	1	0.6945	1	1	1	0.56306	1	0.75301	1	1	1	0.96441	1
1p loss	48 (15%)	277	0.56611	1	0.76407	1	0.0020956	1	0.44976	1	0.11916	1	0.53666	1	0.49552	1	0.12104	1	0.25787	1	0.21172	1	0.5193	1	0.76028	1	0.51108	1	0.57226	1
1q loss	8 (2%)	317	0.96092	1	0.052562	1	0.68489	1	NA	NA	0.99223	1	0.45232	1	0.57068	1	0.59839	1	0.30885	1	0.2431	1	0.18915	1	0.54471	1	0.2702	1	0.25173	1
2q loss	9 (3%)	316	0.051391	1	0.11016	1	1	1	NA	NA	0.99021	1	0.66262	1	0.8905	1	1	1	0.76578	1	1	1	0.17613	1	0.55645	1	0.11135	1	0.73132	1
3p loss	139 (43%)	186	0.61777	1	0.3652	1	0.70191	1	0.095008	1	0.40587	1	0.95012	1	0.86615	1	0.74559	1	0.90403	1	0.5387	1	0.56662	1	0.25253	1	0.57395	1	0.41174	1
3q loss	25 (8%)	300	0.10051	1	0.24024	1	0.63658	1	0.65012	1	0.012551	1	0.28754	1	0.061888	1	0.20483	1	0.068673	1	1	1	0.087125	1	0.17817	1	0.89246	1	0.053625	1
4p loss	137 (42%)	188	0.11334	1	0.79408	1	1	1	0.27093	1	0.40554	1	0.3615	1	0.30972	1	0.26427	1	0.052586	1	1	1	0.51173	1	0.96193	1	0.92574	1	0.20213	1
4q loss	118 (36%)	207	0.079679	1	0.56641	1	0.14555	1	0.13836	1	0.2352	1	0.48328	1	0.84553	1	0.33992	1	0.20944	1	0.5362	1	0.5137	1	0.60053	1	0.68505	1	0.52218	1
5p loss	23 (7%)	302	0.051364	1	0.34812	1	0.46096	1	0.49071	1	0.0078923	1	0.40516	1	0.31318	1	0.35809	1	0.85766	1	0.17842	1	0.85072	1	0.4815	1	0.67454	1	0.28344	1
5q loss	120 (37%)	205	0.15436	1	0.74935	1	0.51249	1	0.68351	1	0.23547	1	0.026292	1	0.26788	1	0.17332	1	0.014076	1	0.54241	1	0.47166	1	0.8421	1	0.30968	1	0.025102	1
6p loss	34 (10%)	291	0.73072	1	0.45705	1	0.14859	1	0.81777	1	0.022679	1	0.076646	1	0.17579	1	0.7123	1	0.078109	1	0.6132	1	0.70015	1	0.89621	1	0.6812	1	0.97595	1
6q loss	37 (11%)	288	0.79416	1	0.62613	1	0.84217	1	0.78876	1	0.0372	1	0.067535	1	0.19551	1	0.85728	1	0.17123	1	0.62113	1	0.26385	1	0.65344	1	0.51385	1	0.14381	1
7p loss	20 (6%)	305	0.73855	1	0.46724	1	0.79159	1	0.79553	1	0.95419	1	0.29422	1	0.21383	1	1	1	0.54684	1	0.50835	1	0.10311	1	0.019144	1	0.42131	1	0.39421	1
7q loss	10 (3%)	315	0.48542	1	0.81816	1	0.46191	1	NA	NA	0.98797	1	0.12365	1	0.42309	1	1	1	0.92335	1	0.2948	1	0.16455	1	0.89299	1	0.38647	1	0.59585	1
8p loss	96 (30%)	229	0.58073	1	0.18115	1	0.57728	1	0.29751	1	0.86566	1	0.21754	1	0.65643	1	0.50308	1	0.5772	1	0.18472	1	0.046404	1	0.08317	1	0.065125	1	0.4593	1
8q loss	11 (3%)	314	0.48168	1	0.6681	1	0.30109	1	0.4632	1	0.61072	1	0.64079	1	1	1	0.65988	1	0.9277	1	1	1	0.30495	1	8.7243e-07	0.000948	0.32826	1	0.17061	1
9p loss	134 (41%)	191	0.804	1	0.35286	1	0.43979	1	0.30009	1	0.40391	1	0.79816	1	0.48246	1	0.65367	1	0.68536	1	0.76567	1	0.13654	1	0.86919	1	0.7356	1	0.3636	1
9q loss	84 (26%)	241	0.87988	1	0.0038675	1	0.77174	1	0.76794	1	0.15997	1	0.292	1	0.71254	1	0.1726	1	0.87891	1	1	1	0.75317	1	0.97663	1	0.60891	1	0.091134	1
10p loss	71 (22%)	254	0.43064	1	0.59207	1	0.22177	1	0.96319	1	0.36265	1	0.79653	1	0.32687	1	0.44108	1	0.32705	1	0.13031	1	0.92865	1	0.048402	1	0.42115	1	0.55641	1
10q loss	70 (22%)	255	0.37805	1	0.99838	1	0.8775	1	0.83239	1	0.35333	1	0.97999	1	0.87659	1	0.21075	1	0.33889	1	0.12959	1	0.18558	1	0.080974	1	0.73361	1	0.079694	1
11p loss	50 (15%)	275	0.34871	1	0.76941	1	0.60026	1	0.71223	1	0.20865	1	0.58086	1	0.3946	1	0.31789	1	0.88297	1	0.38495	1	0.4528	1	0.75881	1	0.44388	1	0.72331	1
11q loss	32 (10%)	293	0.66319	1	0.033787	1	0.40214	1	0.96339	1	0.88999	1	0.69293	1	0.10631	1	1	1	0.50905	1	0.29596	1	0.8636	1	0.6387	1	0.40619	1	0.7918	1
12p loss	5 (2%)	320	0.5049	1	0.0021638	1	0.60509	1	NA	NA	3.6298e-13	3.95e-10	0.18507	1	0.78853	1	0.43294	1	0.31617	1	1	1	0.22951	1	0.91634	1	0.37826	1	0.2729	1
12q loss	4 (1%)	321	0.8638	1	0.18489	1	0.27022	1	NA	NA	1.3235e-16	1.44e-13	0.18507	1	0.54253	1	0.36433	1	0.34958	1	1	1	NA	NA	NA	NA	0.19538	1	0.32651	1
13q loss	123 (38%)	202	0.01329	1	0.5597	1	0.51404	1	0.074447	1	0.33608	1	0.9529	1	0.14004	1	0.41958	1	0.02013	1	0.75331	1	0.72017	1	0.046033	1	0.2296	1	0.014938	1
14q loss	60 (18%)	265	0.19503	1	0.21097	1	0.071892	1	0.22732	1	0.16672	1	0.019306	1	0.1586	1	0.43348	1	0.43434	1	0.43265	1	0.75832	1	0.89874	1	0.42701	1	0.19035	1
15q loss	38 (12%)	287	0.69962	1	0.3133	1	0.046937	1	0.7341	1	0.067795	1	0.039113	1	0.083407	1	0.46163	1	0.02002	1	1	1	0.40582	1	0.27417	1	0.18188	1	0.92102	1
16p loss	49 (15%)	276	0.18803	1	0.75422	1	0.86	1	0.4533	1	0.76667	1	0.73756	1	0.61094	1	0.79291	1	0.95614	1	1	1	0.31258	1	0.63858	1	0.90073	1	0.68431	1
16q loss	60 (18%)	265	0.1332	1	0.16365	1	0.14074	1	1.7696e-06	0.00192	0.67422	1	0.79999	1	0.4344	1	0.13793	1	0.79193	1	0.43265	1	0.075458	1	0.73946	1	0.29919	1	0.58968	1
17p loss	116 (36%)	209	0.20149	1	0.83484	1	0.42587	1	0.040135	1	0.54603	1	0.37633	1	0.19153	1	0.33892	1	0.93431	1	0.53065	1	0.38715	1	0.031402	1	0.28662	1	0.65407	1
17q loss	20 (6%)	305	0.79839	1	0.79292	1	0.05999	1	0.4533	1	0.95419	1	0.59869	1	0.78601	1	0.12951	1	0.28554	1	0.50835	1	0.96741	1	0.35673	1	0.4087	1	0.18454	1
18p loss	36 (11%)	289	0.43416	1	0.87863	1	0.69094	1	0.99688	1	0.86388	1	0.95679	1	0.30196	1	0.20619	1	0.38891	1	0.61816	1	0.075638	1	0.86229	1	0.76615	1	0.42639	1
18q loss	66 (20%)	259	0.49914	1	0.11649	1	0.26921	1	0.76794	1	0.33192	1	0.44553	1	0.92475	1	0.24469	1	0.87781	1	1	1	0.13392	1	0.23123	1	0.32293	1	0.29352	1
19p loss	52 (16%)	273	0.071551	1	0.66899	1	0.86243	1	0.11795	1	0.13733	1	0.59574	1	0.098151	1	0.152	1	0.12477	1	0.018787	1	0.96074	1	0.97513	1	0.1164	1	0.11078	1
19q loss	36 (11%)	289	0.57155	1	0.19745	1	0.83945	1	0.25981	1	0.0018669	1	0.56603	1	0.24846	1	0.59507	1	0.88237	1	0.11049	1	0.1564	1	0.79418	1	0.26137	1	0.034969	1
20p loss	16 (5%)	309	0.060001	1	0.86781	1	1	1	NA	NA	0.97008	1	0.38678	1	0.52409	1	0.72039	1	0.066268	1	1	1	0.90946	1	0.0366	1	0.79526	1	0.70501	1
20q loss	17 (5%)	308	0.37598	1	0.90724	1	0.57516	1	NA	NA	0.9664	1	0.94495	1	0.40629	1	0.73527	1	0.83891	1	1	1	0.11962	1	0.90612	1	0.89003	1	0.17754	1
21q loss	99 (30%)	226	0.45378	1	0.31419	1	0.012506	1	0.56362	1	0.52966	1	0.50355	1	0.71883	1	0.2902	1	0.10045	1	0.74109	1	0.25257	1	0.10154	1	0.94463	1	0.37408	1
22q loss	33 (10%)	292	0.64801	1	0.12607	1	0.060463	1	0.32705	1	0.0011915	1	0.23478	1	0.0004219	0.455	0.28196	1	0.0029199	1	1	1	0.71452	1	0.067564	1	0.40233	1	0.083572	1
Xq loss	13 (4%)	312	0.8842	1	0.28373	1	0.32904	1	0.94869	1	6.6256e-05	0.0715	0.72876	1	0.15019	1	1	1	0.44914	1	1	1	0.68143	1	0.84149	1	1	1	0.78798	1
