
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC-TP/2404198/1.GDAC_mergedClustering.Finished/LUSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2330213/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=361, common to both=327
[1]  10 327
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
43 50 30 31 
 1  2  3  4 
43 50 30 31 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
28 54 72 
 1  2  3 
28 54 72 
[1] "CN_CNMF"
[1] 3
  1   2   3 
116 105 104 
  1   2   3 
116 105 104 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
76 69 48 
 1  2  3 
76 69 48 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
59 72 63 
 1  2  3 
59 72 63 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
47 49 57 41 
 1  2  3  4 
47 49 57 41 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
 1  2  3  4  5  6  7  8 
22 20 55 40 34 36  4  9 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
65 74 81 
 1  2  3 
65 74 81 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
141 125  33 
  1   2   3 
141 125  33 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 56  57  86 100 
  1   2   3   4 
 56  57  86 100 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 327 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3516         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
         962           NA          908          656          329          608 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
         223          454          131         1953           53          429 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
         822         1485          622         1067         1470          734 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
          17         1161         1057          399           NA          587 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
          NA          358          964         1974         1932          444 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        1345           24         1651         2170           NA          357 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         573          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
         428           NA          334           NA          821           80 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        1874          958          881          999          950         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
         698          168           NA           NA          120           13 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
          12          199          246          227          238          207 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
          12          103         1454         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
         832         1107          474         1084           24          544 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
         556          550          399          352          573          258 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
         549          213          183           85           NA           NA 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3765 
         212           48         2023          202          193           NA 
TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 
          NA           NA           NA           NA           29           18 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-51-6867 TCGA-52-7622 TCGA-52-7809 
          12           12           63           NA          541          178 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
         922           NA           NA          880            3           NA 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
          62           31           30           13           30           44 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-60-2695 TCGA-60-2696 
          40           26            6            1          473          109 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
          NA          311           NA           NA         2500          660 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2082         1505         1685          888          274         1456 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
         512         1075         1181          931           96          793 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 
         733          693           37          719          358           NA 
TCGA-63-5131 TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 
          NA           NA           NA           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
         516         1311           61          641           30           31 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
          61           28           30           30          638          761 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
          30           61           31           61           61          215 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
         700          578           92           61          578          366 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
         121          365          759           59          790         1217 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
         699          123          699          153          913          306 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
        1645          122         1492           83          202          211 
TCGA-68-8250 TCGA-68-8251 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 
         244           95           NA           NA           NA           NA 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
          NA           NA           NA         2736           NA           15 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        1285           NA           NA           NA           NA          479 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
          NA           NA         1641           NA         2522           NA 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
          NA           NA           NA         3166           NA           NA 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8146 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 
         833           NA         2183          293           NA         1092 
TCGA-77-8156 TCGA-79-5596 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
          10           NA           NA           11           24           34 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 
          18           10           49            1           NA           35 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
          38           60           26           60           16           43 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
          14           36           13           11           44           54 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
          41           47           89           18          100           82 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
         106          122          160           69           87           NA 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
         143         1213         1777          188          210          115 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
         413          223          308 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=119,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=226,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=155,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=88,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "STOPPEDSMOKINGYEAR"                    
[12] "TOBACCOSMOKINGHISTORYINDICATOR"        
[13] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
167  90  62   4 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 327 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=5, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 80 196  33  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 80 196  33  18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 80 196  33  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 80 196  33  18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
203  91  26   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
203  91  26   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
203  91  26   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
203  91  26   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
167  90  62   4 
[1] "table(vv)"
vv
  I  II III  IV 
167  90  62   4 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
167  90  62   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
167  90  62   4 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=88, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=43, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=49, binary=FALSE, numeric=TRUE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 26 16
  subtype2 29 19
  subtype3 12 16
  subtype4 19 11
subtype1 subtype2 subtype3 subtype4 
      42       48       28       30 
subtype1 subtype2 subtype3 subtype4 
      16       19       16       11 
$subtype1
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1079 
       12.16        13.02         1.61        43.76       115.59        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-22-0944 TCGA-22-1011 TCGA-22-4595 
      122.43         9.30       119.80         7.33         1.74        24.13 
TCGA-22-4607 TCGA-33-4547 TCGA-33-4589 TCGA-34-2600 TCGA-34-2609 TCGA-34-5241 
       19.30        43.10        10.98        61.61        31.23        14.07 
TCGA-37-3783 TCGA-37-3789 TCGA-39-5029 TCGA-43-3920 TCGA-56-1622 TCGA-60-2707 
        3.95         0.43        24.33        18.84        28.93        21.70 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2734 
       68.45        30.61         3.16        26.07         1.22        43.10 
TCGA-66-2742 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2771 
       21.07        25.02         0.99         2.01         2.01        19.00 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2789 
       19.00        12.03         3.98        12.00        22.98         4.04 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        2.79        46.88        99.16        70.13        60.89        34.78 
TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-33-4532 TCGA-33-4538 
       14.10        38.17        34.75        13.12        82.98        97.94 
TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-39-5016 TCGA-39-5021 TCGA-39-5036 
        2.63        28.96         7.73        74.07        68.58        35.64 
TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        0.79        11.57         9.96         0.39         0.39         2.07 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 
       55.40        29.19        24.10        22.78        16.96         2.01 
TCGA-66-2758 TCGA-66-2766 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 
       20.98         1.02        23.01         3.02         2.01        24.95 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01         5.03        30.02        54.08         4.01        49.05 

$subtype3
TCGA-18-3409 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       79.46        19.99        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-34-2604 TCGA-34-2608 TCGA-37-3792 
       48.82        48.33         0.56        31.50        32.84         0.39 
TCGA-39-5030 TCGA-43-2576 TCGA-43-2581 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 
        1.94        18.28        13.12         3.58        10.22        82.19 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2725 TCGA-66-2744 TCGA-66-2753 
        9.01        16.83        35.34        23.64         0.99         1.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2785 TCGA-66-2786 
        2.01         7.07         1.94        25.97 

$subtype4
TCGA-18-3410 TCGA-18-3417 TCGA-18-4083 TCGA-21-1078 TCGA-21-1083 TCGA-22-4591 
        4.80        24.92         6.15        15.55         8.78        20.45 
TCGA-22-4613 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-37-4129 TCGA-37-4130 
       11.77       114.05       173.79       103.53         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 
        7.46         7.82         6.81         0.39        47.80        36.39 
TCGA-39-5035 TCGA-43-2578 TCGA-60-2695 TCGA-60-2713 TCGA-60-2716 TCGA-60-2726 
       15.58        18.08        15.55        47.87        38.83        11.77 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2790 TCGA-66-2793 
        2.01         0.92         0.99         0.99        22.98        10.06 

subtype1 subtype2 subtype3 subtype4 
    0.43     0.39     0.39     0.39 
subtype1 subtype2 subtype3 subtype4 
  122.43    99.16    82.19   173.79 
subtype1 subtype2 subtype3 subtype4 
  19.000   24.525   15.880   11.770 
[1] "0.4 - 122.4 (19.0)" "0.4 - 99.2 (24.5)"  "0.4 - 82.2 (15.9)" 
[4] "0.4 - 173.8 (11.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype4" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype1" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
 [67] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
 [79] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[109] "subtype4" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1  9 34
  subtype2 13 37
  subtype3 11 19
  subtype4 11 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   34
  subtype2   13   37
  subtype3   11   19
  subtype4   11   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9       13       11       11
  MALE         34       37       19       20
D1V4, continuous
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       39       48       30       29
  M1        2        0        0        2
D1V9, multiclass
D1V10, binary
          cls
clus        0  1
  subtype1  1 42
  subtype2  0 50
  subtype3  1 29
  subtype4  0 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   42
  subtype2    0   50
  subtype3    1   29
  subtype4    0   31
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        1        0
  YES       42       50       29       31
D1V11, continuous
D1V12, continuous
D1V13, multiclass
D1V14, continuous

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 20  7
  subtype2 31 21
  subtype3 35 34
subtype1 subtype2 subtype3 
      27       52       69 
subtype1 subtype2 subtype3 
       7       21       34 
$subtype1
TCGA-21-1083 TCGA-22-1005 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-33-4533 
        8.78        64.21        48.82        48.33         0.56       114.05 
TCGA-33-4566 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 
      173.79         0.39         6.54         8.09         7.46         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-2578 
        0.39        47.80        36.39        15.58        18.28        18.08 
TCGA-43-2581 TCGA-60-2695 TCGA-60-2706 TCGA-60-2714 TCGA-66-2754 TCGA-66-2756 
       13.12        15.55        82.19        16.83         2.01         0.99 
TCGA-66-2757 TCGA-66-2785 TCGA-66-2790 
        0.99         1.94        22.98 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        6.15         2.79        46.88        99.16        70.13        34.78 
TCGA-22-0944 TCGA-22-1012 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-33-4532 
        7.33        14.10        38.17        34.75        13.12        82.98 
TCGA-33-4538 TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 TCGA-37-4133 TCGA-39-5016 
       97.94         2.63        28.96         7.73         7.82        74.07 
TCGA-39-5021 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-46-3768 TCGA-51-4079 
       68.58        35.64         0.79        11.57         9.96         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2722 
        0.39         2.07        55.40        29.19        47.87        24.10 
TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 
       22.78        16.96         2.01        20.98        25.02         1.02 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2791 
       23.01         3.02         2.01        24.95        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       30.02        54.08         4.01        49.05 

$subtype3
TCGA-18-3406 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 
       12.16        79.46         4.80        13.02        24.92         1.61 
TCGA-18-3421 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       43.76       115.59        60.89        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1011 
        9.30       119.80        19.99        14.93         4.31         1.74 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4607 TCGA-22-4613 TCGA-33-4547 
       27.02        20.45        24.13        19.30        11.77        43.10 
TCGA-33-4582 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
      103.53        10.98        61.61        31.50        32.84        31.23 
TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-39-5029 TCGA-39-5030 TCGA-43-3920 
       14.07         3.95         0.43        24.33         1.94        18.84 
TCGA-56-1622 TCGA-60-2696 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2712 
       28.93         3.58        10.22        21.70        68.45         9.01 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        38.83        30.61         3.16        26.07         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.64        11.77        43.10        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.92         0.99         2.01         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 
       19.00        19.00        12.03         3.98        12.00        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       22.98         4.04        10.06 

subtype1 subtype2 subtype3 
    0.39     0.39     0.43 
subtype1 subtype2 subtype3 
  173.79    99.16   122.43 
subtype1 subtype2 subtype3 
  15.550   23.555   18.840 
[1] "0.4 - 173.8 (15.6)" "0.4 - 99.2 (23.6)"  "0.4 - 122.4 (18.8)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 15 13
  subtype2 12 42
  subtype3 17 55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   13
  subtype2   12   42
  subtype3   17   55
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       12       17
  MALE         13       42       55
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       27       52       67
  M1        1        0        3
D2V9, multiclass
D2V10, binary
          cls
clus        0  1
  subtype1  1 27
  subtype2  0 54
  subtype3  1 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   27
  subtype2    0   54
  subtype3    1   71
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        1
  YES       27       54       71
D2V11, continuous
D2V12, continuous
D2V13, multiclass
D2V14, continuous

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 58 52
  subtype2 68 33
  subtype3 62 35
subtype1 subtype2 subtype3 
     110      101       97 
subtype1 subtype2 subtype3 
      52       33       35 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       12.16         4.47        79.46        90.51        27.16       115.59 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-5784 TCGA-22-0940 TCGA-22-1000 
       60.89        15.55        31.69        29.85        19.99        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
        4.31        64.21         1.74        27.02        48.82        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-5472 TCGA-22-5479 
       24.13         0.56        32.02         9.53        64.90        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 
       71.34        79.20        62.86       173.79       141.34        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       10.98        19.76        31.50        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
        9.04        10.82        14.07         3.95         0.39         6.54 
TCGA-37-4132 TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.46        47.80        68.58        55.17        70.03         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
        1.94        36.39        15.58        17.88        18.28        13.12 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-52-7811 
        8.48         6.02         5.42         3.78         6.64         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-60-2696 TCGA-60-2697 
       27.45         0.10         1.02         0.99         3.58        12.23 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 
       37.94        21.70        49.48         9.01        16.83        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2725 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
       38.83         3.16        23.64        43.10         2.01         0.99 
TCGA-66-2765 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 TCGA-66-2788 
        2.01        19.00         3.02        19.00        24.95        22.98 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-7138 TCGA-77-7335 TCGA-77-8007 
        6.64         6.94         3.12        11.18        70.09         6.51 
TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 
       86.76        12.59        39.09        17.69       104.09        27.39 
TCGA-77-8145 TCGA-85-6561 TCGA-85-7697 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        6.97         0.79         0.33         1.97         0.85         1.97 
TCGA-90-6837 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-96-8170 TCGA-98-7454 
        1.35         2.70         4.01         2.27         6.90         3.78 
TCGA-98-8022 TCGA-98-8023 
        7.33        10.13 

$subtype2
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       81.07        46.52        11.34        59.51        28.34        24.92 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        6.15         2.79         3.02        46.88        99.16        70.13 
TCGA-21-1077 TCGA-21-1083 TCGA-22-0944 TCGA-22-4593 TCGA-22-4599 TCGA-22-4604 
       34.78         8.78         7.33        35.08        38.17        13.12 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5485 
       11.77        31.69        63.52        14.60        44.22        30.08 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 
       82.98       114.05        97.94        14.07         2.63        61.61 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5240 TCGA-34-5927 TCGA-34-7107 TCGA-37-4133 
       28.96        50.24         7.73        22.95         1.08         7.82 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 
       74.07        44.71        60.76        35.64         0.79        11.57 
TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         1.58        66.51         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-56-7223 
        0.39         0.39         2.07        17.79         5.85         0.99 
TCGA-56-7582 TCGA-56-7730 TCGA-60-2698 TCGA-60-2708 TCGA-60-2713 TCGA-60-2722 
        0.85         0.20        10.22        68.45        47.87        24.10 
TCGA-66-2742 TCGA-66-2755 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 
       21.07         0.92        20.98        25.02         1.02         2.01 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 
       23.01         2.01         3.98        40.01         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 
       54.08         4.01        49.05         2.73        73.08        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8009 
       89.95        20.78         0.49        42.25         0.16        53.95 
TCGA-77-8128 TCGA-77-8133 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-6798 
       37.81        53.92         9.63        54.41         0.33         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 
        0.59         1.61         0.53         1.41         1.18         0.36 
TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-94-7943 TCGA-96-7545 
        0.59         3.48         5.26         4.70        58.42 

$subtype3
TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1080 TCGA-21-1081 
        4.80        13.02         1.61        43.76       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-1012 
      119.80        31.63        88.08        21.57        10.82        14.10 
TCGA-22-4591 TCGA-22-4601 TCGA-22-4607 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       20.45        34.75        19.30         0.79        11.74        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4582 TCGA-33-6738 TCGA-34-2609 
       56.32        16.60        43.10       103.53        26.99        31.23 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         0.43         8.09         6.81         0.39 
TCGA-37-5819 TCGA-39-5029 TCGA-39-5031 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 
        3.39        24.33        27.35        18.08        18.84        18.05 
TCGA-43-6770 TCGA-43-7656 TCGA-43-8116 TCGA-52-7810 TCGA-56-1622 TCGA-56-6545 
        2.79         6.97         6.35        30.31        28.93         2.04 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2695 TCGA-60-2703 
        0.43         1.45         1.32         0.03        15.55        96.82 
TCGA-60-2706 TCGA-60-2710 TCGA-60-2711 TCGA-60-2719 TCGA-60-2721 TCGA-60-2723 
       82.19        55.40        29.19        30.61        26.07        22.78 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
        1.22        11.77        16.96         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2768 TCGA-66-2769 TCGA-66-2780 TCGA-66-2782 
        0.99         0.99         2.01         7.07        12.03        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-8250 
        1.94        25.97         4.04        22.98        10.06         8.02 
TCGA-77-6842 TCGA-77-6844 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 
       29.56        75.09       106.95        46.78        15.75        82.92 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8154 TCGA-85-6560 TCGA-85-7699 TCGA-85-7843 
       11.54        26.40        35.90         0.36         0.03         1.15 
TCGA-85-7844 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-90-7766 
        1.25         0.46         0.43         1.45         1.78         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 
        2.93         3.29         2.86         0.16        39.88         6.18 
TCGA-98-8021 
       13.58 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   114.05   122.43 
subtype1 subtype2 subtype3 
   15.24    14.07    11.77 
[1] "0.1 - 173.8 (15.2)" "0.2 - 114.0 (14.1)" "0.0 - 122.4 (11.8)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[253] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[271] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[301] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[307] "subtype1" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 39 77
  subtype2 17 88
  subtype3 27 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   77
  subtype2   17   88
  subtype3   27   77
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       17       27
  MALE         77       88       77
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
          cls
clus         0   1
  subtype1   5 111
  subtype2   4 101
  subtype3   2 102
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5  111
  subtype2    4  101
  subtype3    2  102
     clus
vv    subtype1 subtype2 subtype3
  NO         5        4        2
  YES      111      101      102
D3V11, continuous
D3V12, continuous
D3V13, multiclass
D3V14, continuous

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 40 31
  subtype2 40 24
  subtype3 31 14
subtype1 subtype2 subtype3 
      71       64       45 
subtype1 subtype2 subtype3 
      31       24       14 
$subtype1
TCGA-18-3417 TCGA-21-5784 TCGA-21-5787 TCGA-22-4605 TCGA-22-4609 TCGA-22-5481 
       24.92        29.85        10.82        32.02         9.53        79.20 
TCGA-22-5489 TCGA-33-4566 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-5232 
       62.86       173.79        10.98        19.76        26.99        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 TCGA-39-5011 TCGA-39-5021 
       32.68         9.04        14.07         5.52        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       55.17        70.03         1.71        24.33         1.94        36.39 
TCGA-39-5039 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       17.88         8.48        18.05         6.02         5.42         3.78 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
        6.97        66.51         6.64         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        2.04         1.02         1.32        12.23        96.82        37.94 
TCGA-60-2709 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-7138 
       49.48         6.64         6.94         3.12        29.56        11.18 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8146 
        6.51        86.76        12.59        39.09        17.69        71.77 
TCGA-77-8156 TCGA-85-6560 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 TCGA-85-8287 
        0.33         0.36         0.33         0.85         1.97         1.45 
TCGA-90-6837 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        1.35         2.70         4.01         2.27         2.86         0.16 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         3.78         7.33        10.13 

$subtype2
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-5783 TCGA-21-5786 TCGA-22-4599 
       90.51         3.02        27.16        88.08        21.57        38.17 
TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       34.75        11.77        31.69        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4582 
       54.28        11.74        18.84        30.08        56.32       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 
      141.34        14.07         7.73         1.08        74.07        44.71 
TCGA-39-5027 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-6770 TCGA-43-7657 
       60.76        27.35        35.64         0.79         2.79         1.58 
TCGA-46-6025 TCGA-51-6867 TCGA-52-7622 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        0.95        60.99        17.79         0.99         1.45         0.85 
TCGA-56-7730 TCGA-68-7755 TCGA-77-6843 TCGA-77-6845 TCGA-77-7140 TCGA-77-7141 
        0.20         2.73        73.08        23.28        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 
       42.25        70.09         0.16        53.95        37.81        53.92 
TCGA-77-8144 TCGA-77-8150 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 
       27.39        54.41         0.79         1.12         0.59         1.61 
TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.25         0.53         1.41         1.18         0.43         0.36 
TCGA-90-7769 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        0.59         3.48         5.26        58.42 

$subtype3
TCGA-21-5782 TCGA-22-4593 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5492 
       31.63        35.08        64.90         0.79        71.34        16.60 
TCGA-33-4587 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-37-5819 
       54.44        50.24        10.82        22.95         4.96         3.39 
TCGA-39-5035 TCGA-43-6143 TCGA-43-8116 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 
       15.58         7.00         6.35         0.59         5.85        30.31 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7822 TCGA-68-8250 TCGA-77-6844 TCGA-77-7139 
        0.99         0.43         0.03         8.02        75.09        89.95 
TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8130 TCGA-77-8139 TCGA-77-8140 
      106.95        46.78        15.75        82.92       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-85-7699 TCGA-85-7843 
       26.40         6.97         9.63        35.90         0.03         1.15 
TCGA-85-7950 TCGA-85-8071 TCGA-85-8288 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        1.97         0.46         1.78         1.55         2.93         3.29 
TCGA-94-7943 TCGA-96-7544 TCGA-98-8021 
        4.70        39.88        13.58 

subtype1 subtype2 subtype3 
    0.10     0.16     0.03 
subtype1 subtype2 subtype3 
  173.79   141.34   106.95 
subtype1 subtype2 subtype3 
   9.530   18.315   10.820 
[1] "0.1 - 173.8 (9.5)"  "0.2 - 141.3 (18.3)" "0.0 - 107.0 (10.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 23 53
  subtype2 14 55
  subtype3 12 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   53
  subtype2   14   55
  subtype3   12   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       14       12
  MALE         53       55       36
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
          cls
clus        0  1
  subtype1  4 72
  subtype2  2 67
  subtype3  3 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   72
  subtype2    2   67
  subtype3    3   45
     clus
vv    subtype1 subtype2 subtype3
  NO         4        2        3
  YES       72       67       45
D4V11, continuous
D4V12, continuous
D4V13, multiclass
D4V14, continuous

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 41 15
  subtype2 39 30
  subtype3 29 27
subtype1 subtype2 subtype3 
      56       69       56 
subtype1 subtype2 subtype3 
      15       30       27 
$subtype1
TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-5483 
       90.51        99.16        60.89       122.43         8.78        18.84 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       62.86        82.98       173.79       103.53        14.07        26.99 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-37-4133 
       28.96        50.24        10.82        22.95         4.96         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5034 
        6.81         0.39         3.39        74.07        55.17        36.39 
TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-46-6026 
       18.08         7.00         5.42         6.97        66.51         0.59 
TCGA-52-7810 TCGA-52-7812 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 
       30.31        27.45        68.45        49.48        29.19        16.83 
TCGA-60-2716 TCGA-66-2727 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2783 
       38.83        16.96        20.98         1.02         2.01        24.95 
TCGA-66-2785 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 
        1.94        22.98        54.08         4.01        29.56        73.08 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7465 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 
       89.95         0.49        15.75         1.61         0.03         1.97 
TCGA-90-7767 TCGA-96-7544 
        2.93        39.88 

$subtype2
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1081 
        3.02        27.16       115.59        46.88        70.13         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-4607 TCGA-22-5471 
       29.85        21.57        10.82        19.99        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5492 
       64.90        63.52        44.22        54.28        71.34        16.60 
TCGA-33-4547 TCGA-33-4589 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       43.10        10.98        31.23        51.78        32.68         9.04 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3789 TCGA-37-3792 TCGA-39-5011 TCGA-39-5019 
       14.07         5.52         0.43         0.39        47.80        44.71 
TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5035 
       68.58        70.03        60.76         1.71        24.33        15.58 
TCGA-39-5037 TCGA-43-5670 TCGA-43-6770 TCGA-46-6025 TCGA-52-7811 TCGA-56-6545 
        0.79        18.05         2.79         0.95         8.75         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
        1.02         0.43         3.58        12.23        10.22        96.82 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2768 TCGA-66-2769 
        3.16        26.07         1.22        11.77         2.01         7.07 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-77-6845 
       19.00         3.98        12.00        22.98         5.03        23.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 
      106.95         0.16        46.78         0.79         1.12         1.15 
TCGA-85-7844 TCGA-92-7340 TCGA-94-7033 
        1.25         2.70         2.86 

$subtype3
TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-21-5782 TCGA-22-1000 TCGA-22-1011 
       15.55        31.69       119.80        31.63        14.93         1.74 
TCGA-22-4591 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-5474 TCGA-22-5478 
       20.45         0.56        32.02         9.53        14.60         0.79 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-33-6737 TCGA-34-2596 TCGA-34-2604 
       11.74        30.08        56.32        19.76         2.63        31.50 
TCGA-34-2608 TCGA-34-7107 TCGA-37-4129 TCGA-39-5030 TCGA-39-5031 TCGA-43-2581 
       32.84         1.08         6.54         1.94        27.35        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-51-6867 TCGA-56-5897 TCGA-56-7221 TCGA-56-7730 
       11.57         8.48        60.99         0.10         0.99         0.20 
TCGA-60-2695 TCGA-60-2704 TCGA-60-2706 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       15.55        37.94        82.19        55.40         9.01        47.87 
TCGA-60-2719 TCGA-60-2725 TCGA-66-2737 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
       30.61        23.64         2.01        23.01         3.02         2.01 
TCGA-66-2800 TCGA-68-7756 TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-85-6560 
       49.05         6.64        75.09        42.25        70.09         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-94-7557 
        0.59         0.33         1.35         1.55         0.59         0.16 
TCGA-94-7943 TCGA-98-7454 
        4.70         3.78 

subtype1 subtype2 subtype3 
    0.03     0.16     0.10 
subtype1 subtype2 subtype3 
  173.79   115.59   119.80 
subtype1 subtype2 subtype3 
  22.965   14.070   12.430 
[1] "0.0 - 173.8 (23.0)" "0.2 - 115.6 (14.1)" "0.1 - 119.8 (12.4)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[181] "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 12 47
  subtype2 17 55
  subtype3 20 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   47
  subtype2   17   55
  subtype3   20   43
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       12       17       20
  MALE         47       55       43
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0       53       66       56
  MX        6        4        6
D5V9, multiclass
D5V10, binary
          cls
clus        0  1
  subtype1  3 56
  subtype2  2 70
  subtype3  3 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   56
  subtype2    2   70
  subtype3    3   60
     clus
vv    subtype1 subtype2 subtype3
  NO         3        2        3
  YES       56       70       60
D5V11, continuous
D5V12, continuous
D5V13, multiclass
D5V14, continuous

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 26 18
  subtype2 30 15
  subtype3 34 19
  subtype4 19 20
subtype1 subtype2 subtype3 subtype4 
      44       45       53       39 
subtype1 subtype2 subtype3 subtype4 
      18       15       19       20 
$subtype1
TCGA-21-1070 TCGA-21-1071 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-22-0940 
      115.59        46.88         9.30        31.63        21.57        19.99 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5479 TCGA-22-5492 TCGA-33-4547 TCGA-34-5232 
       19.30        31.69        54.28        16.60        43.10        51.78 
TCGA-34-5236 TCGA-34-5928 TCGA-37-3789 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        9.04         5.52         0.43        47.80        44.71        68.58 
TCGA-43-5670 TCGA-46-6025 TCGA-56-6545 TCGA-56-7222 TCGA-60-2698 TCGA-60-2703 
       18.05         0.95         2.04         0.43        10.22        96.82 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2768 TCGA-66-2769 
        3.16        26.07         1.22        11.77         2.01         7.07 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-77-6845 
       19.00         3.98        12.00        22.98         5.03        23.28 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      106.95         0.16        46.78         0.36         0.79         1.12 
TCGA-85-7843 TCGA-92-7340 
        1.15         2.70 

$subtype2
TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 TCGA-21-1079 TCGA-22-4591 TCGA-22-4605 
       99.16        70.13        15.55        31.69        20.45        32.02 
TCGA-22-4609 TCGA-22-5491 TCGA-33-4532 TCGA-33-4586 TCGA-33-6738 TCGA-34-2605 
        9.53        56.32        82.98        14.07        26.99        28.96 
TCGA-34-5929 TCGA-37-4129 TCGA-39-5022 TCGA-39-5031 TCGA-43-2578 TCGA-43-3394 
        4.96         6.54        55.17        27.35        18.08        11.57 
TCGA-43-5668 TCGA-43-6770 TCGA-46-6026 TCGA-51-6867 TCGA-52-7810 TCGA-56-7730 
        8.48         2.79         0.59        60.99        30.31         0.20 
TCGA-60-2704 TCGA-60-2708 TCGA-60-2710 TCGA-60-2713 TCGA-60-2719 TCGA-66-2758 
       37.94        68.45        55.40        47.87        30.61        20.98 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2783 
        1.02         2.01        23.01         3.02         2.01        24.95 
TCGA-66-2790 TCGA-66-2800 TCGA-77-6844 TCGA-77-7142 TCGA-85-7696 TCGA-85-7698 
       22.98        49.05        75.09        42.25         0.59         1.61 
TCGA-90-7766 TCGA-94-7557 TCGA-94-7943 
        1.55         0.16         4.70 

$subtype3
TCGA-18-4721 TCGA-18-5592 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       90.51         3.02        60.89       122.43       119.80         8.78 
TCGA-21-5787 TCGA-22-1000 TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 TCGA-33-4566 
       10.82        14.93        71.34        18.84        62.86       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-37-3792 
      103.53        10.98        32.84        50.24        10.82         0.39 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 
        7.82         6.81         0.39         3.39        74.07        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-43-2581 TCGA-43-6143 
       24.33         1.94        36.39        15.58        13.12         7.00 
TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-52-7812 TCGA-60-2695 TCGA-60-2709 
        5.42         6.97        66.51        27.45        15.55        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 TCGA-66-2785 TCGA-66-2794 
       29.19         9.01        16.83        38.83         1.94        54.08 
TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
        4.01        29.56        73.08        89.95         0.49        70.09 
TCGA-77-7465 TCGA-85-7699 TCGA-85-7950 TCGA-90-7767 TCGA-96-7544 
       15.75         0.03         1.97         2.93        39.88 

$subtype4
TCGA-18-5595 TCGA-21-5784 TCGA-22-1011 TCGA-22-4596 TCGA-22-5472 TCGA-22-5473 
       27.16        29.85         1.74         0.56        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-33-6737 
       14.60        44.22         0.79        11.74        30.08        19.76 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 
        2.63        31.50        31.23        32.68        14.07        22.95 
TCGA-34-7107 TCGA-39-5027 TCGA-39-5028 TCGA-39-5037 TCGA-52-7811 TCGA-56-5897 
        1.08        60.76         1.71         0.79         8.75         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2725 
        1.02         0.99         3.58        12.23        82.19        23.64 
TCGA-66-2727 TCGA-66-2737 TCGA-68-7756 TCGA-85-7697 TCGA-85-7844 TCGA-90-6837 
       16.96         2.01         6.64         0.33         1.25         1.35 
TCGA-90-7769 TCGA-94-7033 TCGA-98-7454 
        0.59         2.86         3.78 

subtype1 subtype2 subtype3 subtype4 
    0.16     0.16     0.03     0.10 
subtype1 subtype2 subtype3 subtype4 
  115.59    99.16   173.79    82.19 
subtype1 subtype2 subtype3 subtype4 
   14.30    22.98    16.83     8.75 
[1] "0.2 - 115.6 (14.3)" "0.2 - 99.2 (23.0)"  "0.0 - 173.8 (16.8)"
[4] "0.1 - 82.2 (8.8)"  
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
[103] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[175] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[181] "subtype4"
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
[103] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[175] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[181] "subtype4"
  [1] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype1" "subtype4" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype4" "subtype2" "subtype4" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype4" "subtype4" "subtype4"
 [31] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
 [37] "subtype4" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
 [55] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
 [61] "subtype1" "subtype2" "subtype4" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
[103] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[169] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[175] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[181] "subtype4"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 10 37
  subtype2 15 34
  subtype3 15 42
  subtype4  9 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   37
  subtype2   15   34
  subtype3   15   42
  subtype4    9   32
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       10       15       15        9
  MALE         37       34       42       32
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       44       45       52       34
  MX        1        4        5        6
D6V9, multiclass
D6V10, binary
          cls
clus        0  1
  subtype1  1 46
  subtype2  3 46
  subtype3  3 54
  subtype4  1 40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   46
  subtype2    3   46
  subtype3    3   54
  subtype4    1   40
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        3        3        1
  YES       46       46       54       40
D6V11, continuous
D6V12, continuous
D6V13, multiclass
D6V14, continuous

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 14  6
  subtype2  8  9
  subtype3 32 20
  subtype4 20 17
  subtype5 18 14
  subtype6 21 13
  subtype7  1  2
  subtype8  5  4
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      20       17       52       37       32       34        3        9 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
       6        9       20       17       14       13        2        4 
$subtype1
TCGA-18-3406 TCGA-18-3417 TCGA-21-1070 TCGA-21-1079 TCGA-22-5482 TCGA-37-3783 
       12.16        24.92       115.59        31.69        11.74         3.95 
TCGA-37-3789 TCGA-43-6647 TCGA-43-6771 TCGA-56-5897 TCGA-60-2707 TCGA-60-2720 
        0.43         6.02         5.42         0.10        21.70         3.16 
TCGA-66-2734 TCGA-66-2759 TCGA-66-2765 TCGA-66-2768 TCGA-66-2780 TCGA-66-2782 
       43.10        25.02         2.01         2.01        12.03        12.00 
TCGA-66-2788 TCGA-90-6837 
       22.98         1.35 

$subtype2
TCGA-18-3407 TCGA-21-1076 TCGA-21-1081 TCGA-22-0944 TCGA-22-1012 TCGA-22-4595 
        4.47        60.89         9.30         7.33        14.10        24.13 
TCGA-22-4604 TCGA-22-5471 TCGA-34-5236 TCGA-34-7107 TCGA-39-5019 TCGA-39-5031 
       13.12        31.69         9.04         1.08        44.71        27.35 
TCGA-60-2710 TCGA-60-2715 TCGA-66-2767 TCGA-66-2777 TCGA-85-6561 
       55.40        35.34         2.01         2.01         0.79 

$subtype3
TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4086 TCGA-18-4721 
       81.07        46.52        59.51        28.34         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        3.02        27.16        46.88        99.16        70.13        34.78 
TCGA-22-4601 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5485 TCGA-33-4583 
       34.75        63.52        14.60        44.22        30.08       141.34 
TCGA-33-4586 TCGA-34-2596 TCGA-34-5240 TCGA-37-4133 TCGA-39-5016 TCGA-39-5021 
       14.07         2.63         7.73         7.82        74.07        68.58 
TCGA-39-5027 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 
       60.76        35.64         0.79        11.57         2.79         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-60-2709 TCGA-60-2722 
        0.95         0.39         0.39         2.07        49.48        24.10 
TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 TCGA-66-2766 TCGA-66-2770 
       22.78        16.96         2.01        20.98         1.02        23.01 
TCGA-66-2773 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        3.02        40.01         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-77-6843 TCGA-77-6845 TCGA-85-6798 
       49.05        73.08        23.28         1.12 

$subtype4
TCGA-18-3409 TCGA-18-3410 TCGA-18-4083 TCGA-21-5782 TCGA-21-5786 TCGA-22-4593 
       79.46         4.80         6.15        31.63        21.57        35.08 
TCGA-22-4599 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 
       38.17        11.77         0.79        71.34        79.20        62.86 
TCGA-33-4533 TCGA-34-5231 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
      114.05        50.24        10.82        22.95         5.52         4.96 
TCGA-37-4129 TCGA-39-5030 TCGA-43-3920 TCGA-46-6026 TCGA-56-6545 TCGA-60-2695 
        6.54         1.94        18.84         0.59         2.04        15.55 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2725 TCGA-66-2744 
       68.45        29.19         9.01        47.87        23.64         0.99 
TCGA-66-2755 TCGA-66-2769 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-77-6842 
        0.92         7.07         4.04        22.98        10.06        29.56 
TCGA-85-6560 
        0.36 

$subtype5
TCGA-18-3412 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1080 TCGA-21-1082 
       11.34        13.02         1.61        43.76       122.43       119.80 
TCGA-21-5784 TCGA-22-1011 TCGA-22-4591 TCGA-22-4607 TCGA-22-5472 TCGA-22-5491 
       29.85         1.74        20.45        19.30        64.90        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-34-2600 TCGA-34-5241 
       16.60        82.98        43.10       103.53        61.61        14.07 
TCGA-39-5024 TCGA-39-5039 TCGA-56-1622 TCGA-60-2696 TCGA-60-2716 TCGA-60-2719 
       70.03        17.88        28.93         3.58        38.83        30.61 
TCGA-60-2721 TCGA-66-2742 TCGA-66-2763 TCGA-66-2771 TCGA-66-2778 TCGA-66-2781 
       26.07        21.07         0.99        19.00        19.00         3.98 
TCGA-77-6844 TCGA-94-7033 
       75.09         2.86 

$subtype6
TCGA-21-1078 TCGA-21-1083 TCGA-21-5787 TCGA-22-0940 TCGA-22-1017 TCGA-22-4594 
       15.55         8.78        10.82        19.99        48.82        48.33 
TCGA-22-5483 TCGA-33-4566 TCGA-33-6737 TCGA-33-6738 TCGA-37-3792 TCGA-37-4130 
       18.84       173.79        19.76        26.99         0.39         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5029 
        7.46         6.81         0.39         3.39        47.80        24.33 
TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 
       36.39        15.58        18.08        13.12         8.48         7.00 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2706 TCGA-60-2714 TCGA-60-2724 TCGA-60-2726 
        1.02        10.22        82.19        16.83         1.22        11.77 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2785 
        2.01         0.99         0.99         1.94 

$subtype7
TCGA-22-1002 TCGA-22-1016 TCGA-66-2753 
        4.31        27.02         1.02 

$subtype8
TCGA-22-4596 TCGA-22-5479 TCGA-33-4538 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
        0.56        54.28        97.94        32.84        51.78        32.68 
TCGA-39-5028 TCGA-66-2783 TCGA-66-2786 
        1.71        24.95        25.97 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
    0.10     0.79     0.39     0.36     0.99     0.39     1.02     0.56 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  115.59    60.89   141.34   114.05   122.43   173.79    27.02    97.94 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  11.870   13.120   23.690   15.550   23.570   11.295    4.310   32.680 
[1] "0.1 - 115.6 (11.9)" "0.8 - 60.9 (13.1)"  "0.4 - 141.3 (23.7)"
[4] "0.4 - 114.0 (15.6)" "1.0 - 122.4 (23.6)" "0.4 - 173.8 (11.3)"
[7] "1.0 - 27.0 (4.3)"   "0.6 - 97.9 (32.7)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype3"
  [7] "subtype5" "subtype5" "subtype3" "subtype3" "subtype1" "subtype5"
 [13] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype6" "subtype1" "subtype5" "subtype2" "subtype5" "subtype6"
 [31] "subtype4" "subtype5" "subtype4" "subtype6" "subtype6" "subtype2"
 [37] "subtype7" "subtype5" "subtype2" "subtype7" "subtype6" "subtype5"
 [43] "subtype4" "subtype6" "subtype2" "subtype8" "subtype4" "subtype3"
 [49] "subtype2" "subtype5" "subtype4" "subtype2" "subtype5" "subtype3"
 [55] "subtype3" "subtype3" "subtype4" "subtype8" "subtype4" "subtype4"
 [61] "subtype1" "subtype6" "subtype3" "subtype4" "subtype5" "subtype5"
 [67] "subtype5" "subtype4" "subtype8" "subtype5" "subtype6" "subtype5"
 [73] "subtype3" "subtype3" "subtype6" "subtype6" "subtype3" "subtype5"
 [79] "subtype8" "subtype4" "subtype8" "subtype8" "subtype2" "subtype4"
 [85] "subtype3" "subtype5" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype6" "subtype4" "subtype6" "subtype6"
 [97] "subtype3" "subtype6" "subtype6" "subtype6" "subtype6" "subtype3"
[103] "subtype2" "subtype3" "subtype5" "subtype3" "subtype8" "subtype6"
[109] "subtype4" "subtype2" "subtype6" "subtype6" "subtype3" "subtype3"
[115] "subtype5" "subtype6" "subtype6" "subtype3" "subtype4" "subtype6"
[121] "subtype6" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype4" "subtype3" "subtype3" "subtype3" "subtype5" "subtype1"
[133] "subtype4" "subtype6" "subtype4" "subtype5" "subtype6" "subtype6"
[139] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[145] "subtype4" "subtype6" "subtype2" "subtype5" "subtype5" "subtype1"
[151] "subtype5" "subtype3" "subtype3" "subtype6" "subtype4" "subtype6"
[157] "subtype3" "subtype1" "subtype3" "subtype5" "subtype4" "subtype7"
[163] "subtype6" "subtype4" "subtype6" "subtype6" "subtype3" "subtype1"
[169] "subtype5" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[175] "subtype3" "subtype5" "subtype3" "subtype2" "subtype5" "subtype1"
[181] "subtype5" "subtype1" "subtype8" "subtype6" "subtype8" "subtype3"
[187] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[193] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype5"
[199] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype5"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1  5 17
  subtype2  4 16
  subtype3 10 45
  subtype4 17 23
  subtype5  8 26
  subtype6 10 26
  subtype7  1  3
  subtype8  4  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   17
  subtype2    4   16
  subtype3   10   45
  subtype4   17   23
  subtype5    8   26
  subtype6   10   26
  subtype7    1    3
  subtype8    4    5
D7V4, continuous
[1] "Remove cluster labels:" "subtype8"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype8 
       3        4        7       11        7       10        2 
 [1] "subtype1" "subtype2" "subtype4" "subtype5" "subtype5" "subtype4"
 [7] "subtype6" "subtype6" "subtype5" "subtype4" "subtype6" "subtype2"
[13] "subtype4" "subtype3" "subtype2" "subtype4" "subtype5" "subtype3"
[19] "subtype3" "subtype3" "subtype4" "subtype4" "subtype1" "subtype6"
[25] "subtype3" "subtype4" "subtype5" "subtype5" "subtype4" "subtype6"
[31] "subtype6" "subtype3" "subtype6" "subtype6" "subtype5" "subtype6"
[37] "subtype4" "subtype2" "subtype4" "subtype6" "subtype1" "subtype3"
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
          cls
clus        0  1
  subtype1  0 22
  subtype2  2 18
  subtype3  0 55
  subtype4  2 38
  subtype5  1 33
  subtype6  1 35
  subtype7  0  4
  subtype8  0  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   22
  subtype2    2   18
  subtype3    0   55
  subtype4    2   38
  subtype5    1   33
  subtype6    1   35
  subtype7    0    4
  subtype8    0    9
D7V11, continuous
D7V12, continuous
D7V13, multiclass
D7V14, continuous

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 35 25
  subtype2 40 28
  subtype3 44 32
subtype1 subtype2 subtype3 
      60       68       76 
subtype1 subtype2 subtype3 
      25       28       32 
$subtype1
TCGA-18-3409 TCGA-18-3410 TCGA-18-3417 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 
       79.46         4.80        24.92         8.78        21.57        10.82 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
       19.99         4.31        27.02        48.82        48.33         0.56 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-33-4533 
        0.79        71.34        79.20        18.84        62.86       114.05 
TCGA-33-4566 TCGA-33-6737 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
      173.79        19.76        10.82        22.95         5.52         4.96 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         8.09         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-43-2578 
        3.39        47.80         1.94        36.39        15.58        18.08 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-56-6545 TCGA-56-6546 
       13.12         8.48         7.00         6.02         2.04         1.02 
TCGA-60-2695 TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-60-2726 
       15.55        82.19         9.01        16.83         3.16        11.77 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2769 
        0.99         2.01         0.92         0.99         0.99         7.07 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-77-6842 TCGA-85-6560 
        1.94         4.04        22.98        10.06        29.56         0.36 

$subtype2
TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-22-4599 TCGA-22-4601 
       99.16        70.13        60.89        34.78        38.17        34.75 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        11.77        31.69        63.52        14.60        44.22 
TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4583 TCGA-33-4586 TCGA-33-6738 
       11.74        30.08        82.98       141.34        14.07        26.99 
TCGA-34-2596 TCGA-34-5240 TCGA-34-7107 TCGA-37-4133 TCGA-39-5016 TCGA-39-5021 
        2.63         7.73         1.08         7.82        74.07        68.58 
TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
       35.64         0.79        11.57         2.79         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        0.39         0.39         2.07        49.48        55.40        29.19 
TCGA-60-2713 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2758 
       47.87        24.10        22.78        16.96         2.01        20.98 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2787 
       25.02         1.02         2.01        23.01         3.02        40.01 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-66-2800 TCGA-77-6843 TCGA-77-6845 
        5.03        30.02         4.01        49.05        73.08        23.28 
TCGA-85-6561 TCGA-85-6798 
        0.79         1.12 

$subtype3
TCGA-18-3406 TCGA-18-3414 TCGA-18-3419 TCGA-18-3421 TCGA-21-1070 TCGA-21-1078 
       12.16        13.02         1.61        43.76       115.59        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 
       31.69       122.43         9.30       119.80        31.63        29.85 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        7.33         1.74        14.10        20.45        35.08        24.13 
TCGA-22-4607 TCGA-22-5472 TCGA-22-5479 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       19.30        64.90        54.28        56.32        16.60        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       43.10       103.53        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-39-5019 
       32.68         9.04        14.07         3.95         0.43        44.71 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5039 
       70.03        60.76         1.71        24.33        27.35        17.88 
TCGA-43-3920 TCGA-43-6771 TCGA-46-6026 TCGA-56-1622 TCGA-56-5897 TCGA-60-2696 
       18.84         5.42         0.59        28.93         0.10         3.58 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       10.22        21.70        68.45        35.34        38.83        30.61 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 
       26.07         1.22        23.64        43.10        21.07         1.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        0.99         2.01         2.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00        24.95        25.97        22.98 
TCGA-66-2794 TCGA-77-6844 TCGA-90-6837 TCGA-94-7033 
       54.08        75.09         1.35         2.86 

subtype1 subtype2 subtype3 
    0.36     0.39     0.10 
subtype1 subtype2 subtype3 
  173.79   141.34   122.43 
subtype1 subtype2 subtype3 
   8.895   23.145   22.340 
[1] "0.4 - 173.8 (8.9)"  "0.4 - 141.3 (23.1)" "0.1 - 122.4 (22.3)"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 25 40
  subtype2 15 59
  subtype3 19 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   40
  subtype2   15   59
  subtype3   19   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       15       19
  MALE         40       59       62
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
D8V7, multiclass
D8V8, multiclass
D8V9, multiclass
D8V10, binary
          cls
clus        0  1
  subtype1  1 64
  subtype2  1 73
  subtype3  4 77
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   64
  subtype2    1   73
  subtype3    4   77
     clus
vv    subtype1 subtype2 subtype3
  NO         1        1        4
  YES       64       73       77
D8V11, continuous
D8V12, continuous
D8V13, multiclass
D8V14, continuous

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 78 57
  subtype2 78 38
  subtype3 20 12
subtype1 subtype2 subtype3 
     135      116       32 
subtype1 subtype2 subtype3 
      57       38       12 
$subtype1
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
        2.79        90.51        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
      122.43         8.78        31.63        29.85        21.57        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 
       19.99         7.33         1.74        14.10        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13         0.56        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       31.69        63.52        14.60         0.79        71.34        79.20 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       43.10       173.79       103.53       141.34        14.07        10.98 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 
       31.50        28.96        31.23        14.07         0.43         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       68.58         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-46-3768 TCGA-51-4079 
       13.12        11.57        18.84         8.48         9.96         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 
        2.07        28.93         0.10        15.55         3.58        10.22 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       82.19        68.45        29.19         9.01        47.87        16.83 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       38.83        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
        1.22        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        1.02         2.01         0.92        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 
        2.01         1.02         2.01         2.01        19.00         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2795 TCGA-77-8139 TCGA-77-8144 
        4.01       104.09        27.39 

$subtype2
TCGA-21-5783 TCGA-22-4593 TCGA-22-4605 TCGA-22-5479 TCGA-22-5483 TCGA-33-4587 
       88.08        35.08        32.02        54.28        18.84        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 
       19.76        26.99        50.24        51.78         9.04        10.82 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-39-5019 TCGA-39-5022 
       22.95         5.52         4.96         1.08        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       70.03        60.76        18.05         7.00         6.02         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-46-6025 TCGA-46-6026 TCGA-51-6867 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.95         0.59        60.99         5.85        30.31         8.75 
TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       27.45         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
        1.45         1.32         0.03        12.23        96.82        37.94 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       86.76        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8146 TCGA-77-8148 
       17.69        11.54        26.40         6.97        71.77         9.63 
TCGA-77-8150 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
       54.41        35.90         0.33         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        1.97         0.53         1.41         0.43         1.45         1.78 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        1.35         1.55         2.93         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        58.42         6.18         6.90         3.78 
TCGA-98-8021 TCGA-98-8022 
       13.58         7.33 

$subtype3
TCGA-21-1072 TCGA-21-1077 TCGA-22-4609 TCGA-22-5472 TCGA-22-5477 TCGA-22-5482 
       99.16        34.78         9.53        64.90        44.22        11.74 
TCGA-22-5485 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5234 TCGA-34-5240 
       30.08         2.63        61.61        32.84        32.68         7.73 
TCGA-43-6770 TCGA-51-4080 TCGA-52-7622 TCGA-56-7582 TCGA-56-7730 TCGA-60-2709 
        2.79         0.39        17.79         0.85         0.20        49.48 
TCGA-60-2710 TCGA-60-2725 TCGA-66-2770 TCGA-66-2787 TCGA-66-2794 TCGA-66-2800 
       55.40        23.64        23.01        40.01        54.08        49.05 
TCGA-77-6843 TCGA-77-7338 TCGA-77-8009 TCGA-85-6798 TCGA-85-7844 TCGA-85-8071 
       73.08         0.16        53.95         1.12         1.25         0.46 
TCGA-85-8072 TCGA-98-8023 
        1.18        10.13 

subtype1 subtype2 subtype3 
    0.10     0.03     0.16 
subtype1 subtype2 subtype3 
  173.79   106.95    99.16 
subtype1 subtype2 subtype3 
  17.880    6.955   23.325 
[1] "0.1 - 173.8 (17.9)" "0.0 - 107.0 (7.0)"  "0.2 - 99.2 (23.3)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype3"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  41 100
  subtype2  30  95
  subtype3   7  26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   41  100
  subtype2   30   95
  subtype3    7   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       41       30        7
  MALE        100       95       26
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
D9V7, multiclass
D9V8, multiclass
D9V9, multiclass
D9V10, binary
          cls
clus         0   1
  subtype1   4 137
  subtype2   6 119
  subtype3   0  33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  137
  subtype2    6  119
  subtype3    0   33
     clus
vv    subtype1 subtype2 subtype3
  NO         4        6        0
  YES      137      119       33
D9V11, continuous
D9V12, continuous
D9V13, multiclass
D9V14, continuous

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 30 25
  subtype2 35 20
  subtype3 55 26
  subtype4 56 36
subtype1 subtype2 subtype3 subtype4 
      55       55       81       92 
subtype1 subtype2 subtype3 subtype4 
      25       20       26       36 
$subtype1
TCGA-21-1079 TCGA-21-5782 TCGA-21-5783 TCGA-21-5787 TCGA-22-4593 TCGA-22-4595 
       31.69        31.63        88.08        10.82        35.08        24.13 
TCGA-22-5478 TCGA-22-5483 TCGA-33-4533 TCGA-34-2600 TCGA-34-5236 TCGA-34-5927 
        0.79        18.84       114.05        61.61         9.04        22.95 
TCGA-34-5928 TCGA-39-5024 TCGA-39-5027 TCGA-39-5031 TCGA-43-5670 TCGA-43-6143 
        5.52        70.03        60.76        27.35        18.05         7.00 
TCGA-43-8115 TCGA-43-8116 TCGA-51-6867 TCGA-52-7809 TCGA-56-6545 TCGA-56-7222 
        6.64         6.35        60.99         5.85         2.04         0.43 
TCGA-56-7223 TCGA-60-2703 TCGA-66-2793 TCGA-68-7755 TCGA-68-7757 TCGA-77-6842 
        0.99        96.82        10.06         2.73         6.94        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-8008 TCGA-77-8136 
       75.09        23.28        89.95        20.78        86.76        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
        9.63        54.41         0.33         1.15         0.85         1.97 
TCGA-85-8287 TCGA-90-7766 TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-96-8169 
        1.45         1.55         4.01         2.27         0.16         6.18 
TCGA-98-8022 
        7.33 

$subtype2
TCGA-18-3406 TCGA-18-3408 TCGA-18-4086 TCGA-18-4721 TCGA-21-1072 TCGA-21-1076 
       12.16        81.07         2.79        90.51        99.16        60.89 
TCGA-21-1077 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 
       34.78        32.02         9.53        31.69        63.52        44.22 
TCGA-22-5482 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2605 
       11.74       141.34        14.07        10.98         2.63        28.96 
TCGA-34-5231 TCGA-34-5240 TCGA-39-5022 TCGA-43-6770 TCGA-46-6026 TCGA-51-4079 
       50.24         7.73        55.17         2.79         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 
        0.39         2.07        17.79         0.99         0.85         0.20 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2722 TCGA-66-2727 TCGA-66-2737 
       37.94        49.48        55.40        24.10        16.96         2.01 
TCGA-66-2758 TCGA-66-2770 TCGA-66-2787 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 
       20.98        23.01        40.01         5.03        54.08         4.01 
TCGA-77-6843 TCGA-77-7141 TCGA-77-7338 TCGA-77-8009 TCGA-85-6798 TCGA-85-7696 
       73.08         0.49         0.16        53.95         1.12         0.59 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-90-7769 
        1.25         1.97         0.53         0.46         1.18         0.59 
TCGA-98-8021 
       13.58 

$subtype3
TCGA-18-3407 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
        4.47        46.52        13.02        28.34         1.61        43.76 
TCGA-21-1075 TCGA-21-1080 TCGA-21-1083 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
       70.13       122.43         8.78        19.99         7.33        14.10 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4613 TCGA-22-5474 TCGA-22-5481 TCGA-22-5485 
       20.45        48.33        11.77        14.60        79.20        30.08 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-34-2604 
       16.60        82.98        43.10       103.53        54.44        31.50 
TCGA-34-2609 TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 
       31.23        14.07         0.43         0.39         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 TCGA-39-5029 TCGA-39-5034 
        0.39         3.39        47.80        68.58        24.33        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64         0.79        17.88        18.28        18.08 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-7658 TCGA-46-3768 
       13.12        11.57        18.84         8.48        66.51         9.96 
TCGA-56-5897 TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2708 
        0.10        15.55         3.58        10.22        82.19        68.45 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19        47.87        38.83        30.61         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 
       22.78         1.22        23.64        43.10         0.99         1.02 
TCGA-66-2754 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 TCGA-66-2777 
        2.01         0.99         2.01         2.01        19.00         2.01 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       12.00        25.97        22.98         4.04        22.98        30.02 
TCGA-66-2800 TCGA-68-8250 TCGA-85-8070 
       49.05         8.02         1.41 

$subtype4
TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 TCGA-21-1078 TCGA-21-5784 
        4.80        11.34        59.51        24.92        15.55        29.85 
TCGA-21-5786 TCGA-22-1011 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       21.57         1.74         0.56        34.75        13.12        19.30 
TCGA-22-5472 TCGA-22-5479 TCGA-22-5480 TCGA-22-5489 TCGA-22-5491 TCGA-33-4538 
       64.90        54.28        71.34        62.86        56.32        97.94 
TCGA-33-4566 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
      173.79        19.76        26.99        32.84        51.78        32.68 
TCGA-34-5239 TCGA-34-5929 TCGA-34-7107 TCGA-37-4130 TCGA-39-5019 TCGA-39-5028 
       10.82         4.96         1.08         8.09        44.71         1.71 
TCGA-39-5030 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
        1.94         6.02         5.42         3.78         6.97         1.58 
TCGA-46-6025 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6546 
        0.95        30.31         8.75        27.45        28.93         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-60-2697 TCGA-60-2712 TCGA-60-2714 
        1.45         1.32         0.03        12.23         9.01        16.83 
TCGA-66-2742 TCGA-66-2755 TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 TCGA-66-2780 
       21.07         0.92        25.02         1.02         2.01        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-68-7756 TCGA-68-8251 TCGA-77-7138 
        3.98        24.95         1.94         6.64         3.12        11.18 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8146 TCGA-77-8154 
       37.81        82.92        12.59        53.92        71.77        35.90 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-8276 
        0.36         0.79         0.33         1.61         0.03         0.43 
TCGA-85-8288 TCGA-90-6837 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        1.78         1.35         2.93         3.29         2.70         3.48 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        5.26         2.86         4.70        39.88        58.42         6.90 
TCGA-98-7454 TCGA-98-8023 
        3.78        10.13 

subtype1 subtype2 subtype3 subtype4 
    0.16     0.16     0.10     0.03 
subtype1 subtype2 subtype3 subtype4 
  114.05   141.34   122.43   173.79 
subtype1 subtype2 subtype3 subtype4 
  11.540   12.160   18.080   10.475 
[1] "0.2 - 114.0 (11.5)" "0.2 - 141.3 (12.2)" "0.1 - 122.4 (18.1)"
[4] "0.0 - 173.8 (10.5)"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype3" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[241] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[247] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[265] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
[271] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[277] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[283] "subtype4"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype3" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[241] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[247] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[265] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
[271] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[277] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[283] "subtype4"
  [1] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype4" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [25] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype4"
 [37] "subtype4" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
 [43] "subtype2" "subtype4" "subtype2" "subtype3" "subtype2" "subtype1"
 [49] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
 [79] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [97] "subtype2" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype3"
[127] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[139] "subtype3" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[151] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype3"
[163] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[175] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[187] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[223] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
[229] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[241] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype2"
[247] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[265] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype1"
[271] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
[277] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[283] "subtype4"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 18 38
  subtype2 12 45
  subtype3 29 57
  subtype4 19 81
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   38
  subtype2   12   45
  subtype3   29   57
  subtype4   19   81
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       18       12       29       19
  MALE         38       45       57       81
D10V4, continuous
D10V5, multiclass
D10V6, multiclass
D10V7, multiclass
D10V8, multiclass
D10V9, multiclass
D10V10, binary
          cls
clus        0  1
  subtype1  5 51
  subtype2  3 54
  subtype3  1 85
  subtype4  1 99
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   51
  subtype2    3   54
  subtype3    1   85
  subtype4    1   99
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        3        1        1
  YES       51       54       85       99
D10V11, continuous
D10V12, continuous
D10V13, multiclass
D10V14, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
                    "STOPPEDSMOKINGYEAR" 
                                     V13 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V14 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
